RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 SGIP1Q9BQI5 828 aa19.23■□□□□ 0.67
NPHP4-205ENST00000466897 NYXQ9GZU5 481 aa19.23■□□□□ 0.67
NPHP4-205ENST00000466897 CWC25Q9NXE8 425 aaPredicted RBP19.23■□□□□ 0.67
NPHP4-205ENST00000466897 ATP5J2-PTCD1G3V325 749 aa19.22■□□□□ 0.67
NPHP4-205ENST00000466897 GPTP24298 496 aa19.22■□□□□ 0.67
NPHP4-205ENST00000466897 CWF19L2Q2TBE0 894 aaKnown RBP19.22■□□□□ 0.67
NPHP4-205ENST00000466897 MSL1Q68DK7 614 aa19.22■□□□□ 0.67
NPHP4-205ENST00000466897 NTSR2O95665 410 aa19.21■□□□□ 0.67
NPHP4-205ENST00000466897 POLD1P28340 1107 aa19.21■□□□□ 0.67
NPHP4-205ENST00000466897 GCKRQ14397 625 aa19.21■□□□□ 0.67
NPHP4-205ENST00000466897 SUSD4Q5VX71 490 aa19.21■□□□□ 0.67
NPHP4-205ENST00000466897 BICDL1Q6ZP65 573 aa19.21■□□□□ 0.67
NPHP4-205ENST00000466897 SPON1Q9HCB6 807 aa19.21■□□□□ 0.67
NPHP4-205ENST00000466897 PARP3Q9Y6F1 533 aa19.21■□□□□ 0.67
NPHP4-205ENST00000466897 PLIN1O60240 522 aa19.2■□□□□ 0.66
NPHP4-205ENST00000466897 SERPINB2P05120 415 aa19.2■□□□□ 0.66
NPHP4-205ENST00000466897 RLBP1P12271 317 aa19.2■□□□□ 0.66
NPHP4-205ENST00000466897 TPTE2Q6XPS3 522 aa19.2■□□□□ 0.66
NPHP4-205ENST00000466897 ZBTB38Q8NAP3 1195 aaPredicted RBP19.2■□□□□ 0.66
NPHP4-205ENST00000466897 CLUAP1Q96AJ1 413 aa19.2■□□□□ 0.66
NPHP4-205ENST00000466897 UTP14AQ9BVJ6 771 aaKnown RBP19.2■□□□□ 0.66
NPHP4-205ENST00000466897 TNNQ9UQP3 1299 aa19.2■□□□□ 0.66
NPHP4-205ENST00000466897 UTYO14607 1347 aa19.2■□□□□ 0.66
NPHP4-205ENST00000466897 PCCAP05165 728 aaPredicted RBP19.19■□□□□ 0.66
NPHP4-205ENST00000466897 PTGER2P43116 358 aa19.19■□□□□ 0.66
NPHP4-205ENST00000466897 NBPF5PQ86XG9 351 aaPredicted RBP19.19■□□□□ 0.66
NPHP4-205ENST00000466897 TMEM57Q8N5G2 664 aa19.19■□□□□ 0.66
NPHP4-205ENST00000466897 SUPT16HQ9Y5B9 1047 aaKnown RBP19.19■□□□□ 0.66
NPHP4-205ENST00000466897 DLEC1Q9Y238 1755 aa19.19■□□□□ 0.66
NPHP4-205ENST00000466897 C10orf71Q711Q0 1435 aa19.18■□□□□ 0.66
NPHP4-205ENST00000466897 TNRC6CQ9HCJ0 1690 aaKnown RBP19.18■□□□□ 0.66
NPHP4-205ENST00000466897 GRM8O00222 908 aa19.18■□□□□ 0.66
NPHP4-205ENST00000466897 CNBD1Q8NA66 436 aa19.18■□□□□ 0.66
NPHP4-205ENST00000466897 ATF5Q9Y2D1 282 aaPredicted RBP19.18■□□□□ 0.66
NPHP4-205ENST00000466897 SH3TC1Q8TE82 1336 aa19.18■□□□□ 0.66
NPHP4-205ENST00000466897 CDHR2Q9BYE9 1310 aa19.18■□□□□ 0.66
NPHP4-205ENST00000466897 H7C1W4 665 aa19.17■□□□□ 0.66
NPHP4-205ENST00000466897 HSP90B1P14625 803 aaKnown RBP19.17■□□□□ 0.66
NPHP4-205ENST00000466897 PRR5LQ6MZQ0 368 aa19.17■□□□□ 0.66
NPHP4-205ENST00000466897 TRMT112Q9UI30 125 aaKnown RBP19.17■□□□□ 0.66
NPHP4-205ENST00000466897 KIAA1551Q9HCM1 1747 aa19.17■□□□□ 0.66
NPHP4-205ENST00000466897 CASP7P55210 303 aa19.16■□□□□ 0.66
NPHP4-205ENST00000466897 MVPQ14764 893 aaKnown RBP19.16■□□□□ 0.66
NPHP4-205ENST00000466897 SLC10A5Q5PT55 438 aa19.16■□□□□ 0.66
NPHP4-205ENST00000466897 PANK1Q8TE04 598 aa19.16■□□□□ 0.66
NPHP4-205ENST00000466897 USP44Q9H0E7 712 aa19.16■□□□□ 0.66
NPHP4-205ENST00000466897 ST5P78524 1137 aa19.15■□□□□ 0.66
NPHP4-205ENST00000466897 C20orf194Q5TEA3 1177 aa19.15■□□□□ 0.66
NPHP4-205ENST00000466897 ABCC12Q96J65 1359 aa19.15■□□□□ 0.66
NPHP4-205ENST00000466897 COL11A2P13942 1736 aaPredicted RBP19.14■□□□□ 0.66
NPHP4-205ENST00000466897 ITPRIPQ8IWB1 547 aa19.14■□□□□ 0.65
NPHP4-205ENST00000466897 CHMP4BQ9H444 224 aaKnown RBP19.14■□□□□ 0.65
NPHP4-205ENST00000466897 C9orf78Q9NZ63 289 aaPredicted RBP19.14■□□□□ 0.65
NPHP4-205ENST00000466897 DDX19BQ9UMR2 479 aa19.14■□□□□ 0.65
NPHP4-205ENST00000466897 HDAC5Q9UQL6 1122 aa19.14■□□□□ 0.65
NPHP4-205ENST00000466897 BRCA1P38398 1863 aaKnown RBP19.14■□□□□ 0.65
NPHP4-205ENST00000466897 GNAI3P08754 354 aa19.13■□□□□ 0.65
NPHP4-205ENST00000466897 GTF2E1P29083 439 aaPredicted RBP19.13■□□□□ 0.65
NPHP4-205ENST00000466897 UBE3BQ7Z3V4 1068 aa19.13■□□□□ 0.65
NPHP4-205ENST00000466897 FAM89AQ96GI7 184 aa19.13■□□□□ 0.65
NPHP4-205ENST00000466897 BRIP1Q9BX63 1249 aa19.13■□□□□ 0.65
NPHP4-205ENST00000466897 PLA2G12BQ9BX93 195 aa19.13■□□□□ 0.65
NPHP4-205ENST00000466897 FAM177BA6PVY3 158 aa19.12■□□□□ 0.65
NPHP4-205ENST00000466897 NPHP1O15259 732 aa19.12■□□□□ 0.65
NPHP4-205ENST00000466897 NBPF7P0C2Y1 421 aaPredicted RBP19.12■□□□□ 0.65
NPHP4-205ENST00000466897 ERFEQ4G0M1 354 aa19.12■□□□□ 0.65
NPHP4-205ENST00000466897 NUTM1Q86Y26 1132 aa19.12■□□□□ 0.65
NPHP4-205ENST00000466897 PDZRN3Q9UPQ7 1066 aa19.12■□□□□ 0.65
NPHP4-205ENST00000466897 COG6Q9Y2V7 657 aa19.12■□□□□ 0.65
NPHP4-205ENST00000466897 KLRG2A4D1S0 409 aaPredicted RBP19.11■□□□□ 0.65
NPHP4-205ENST00000466897 IRS4O14654 1257 aaPredicted RBP19.11■□□□□ 0.65
NPHP4-205ENST00000466897 ZBTB7BO15156 539 aaPredicted RBP19.11■□□□□ 0.65
NPHP4-205ENST00000466897 MEIS3Q99687 375 aa19.11■□□□□ 0.65
NPHP4-205ENST00000466897 SRCAPQ6ZRS2 3230 aa19.11■□□□□ 0.65
NPHP4-205ENST00000466897 PDE8AO60658 829 aa19.1■□□□□ 0.65
NPHP4-205ENST00000466897 UBTFL1P0CB47 393 aaPredicted RBP19.1■□□□□ 0.65
NPHP4-205ENST00000466897 CD2APQ9Y5K6 639 aa19.1■□□□□ 0.65
NPHP4-205ENST00000466897 PDE6BP35913 854 aa19.09■□□□□ 0.65
NPHP4-205ENST00000466897 CRY2Q49AN0 593 aa19.09■□□□□ 0.65
NPHP4-205ENST00000466897 SYNE4Q8N205 404 aa19.09■□□□□ 0.65
NPHP4-205ENST00000466897 RTL9Q8NET4 1388 aa19.08■□□□□ 0.65
NPHP4-205ENST00000466897 AAMPQ13685 434 aa19.08■□□□□ 0.64
NPHP4-205ENST00000466897 NLRP3Q96P20 1036 aa19.08■□□□□ 0.64
NPHP4-205ENST00000466897 SF3B3Q15393 1217 aaKnown RBP19.07■□□□□ 0.64
NPHP4-205ENST00000466897 RABL6Q3YEC7 729 aaPredicted RBP19.07■□□□□ 0.64
NPHP4-205ENST00000466897 RTL5Q5HYW3 569 aaPredicted RBP19.07■□□□□ 0.64
NPHP4-205ENST00000466897 KAZALD1Q96I82 304 aa19.07■□□□□ 0.64
NPHP4-205ENST00000466897 ZBTB40Q9NUA8 1239 aa19.07■□□□□ 0.64
NPHP4-205ENST00000466897 CACNA1SQ13698 1873 aa19.07■□□□□ 0.64
NPHP4-205ENST00000466897 GNAI2P04899 355 aa19.06■□□□□ 0.64
NPHP4-205ENST00000466897 HCLS1P14317 486 aaPredicted RBP19.06■□□□□ 0.64
NPHP4-205ENST00000466897 CTSWP56202 376 aa19.06■□□□□ 0.64
NPHP4-205ENST00000466897 TGFB2P61812 414 aa19.06■□□□□ 0.64
NPHP4-205ENST00000466897 FOXO4P98177 505 aa19.06■□□□□ 0.64
NPHP4-205ENST00000466897 JARID2Q92833 1246 aaPredicted RBP19.06■□□□□ 0.64
NPHP4-205ENST00000466897 SUCLG2Q96I99 432 aa19.06■□□□□ 0.64
NPHP4-205ENST00000466897 CSF1RP07333 972 aa19.05■□□□□ 0.64
NPHP4-205ENST00000466897 CRBNQ96SW2 442 aa19.05■□□□□ 0.64
NPHP4-205ENST00000466897 TAF1P21675 1872 aa19.04■□□□□ 0.64
NPHP4-205ENST00000466897 MTX1Q13505 466 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms