RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TCHHQ07283 1943 aa10.77□□□□□ -0.68
SYNE1-217ENST00000466159 MRC1P22897 1456 aa10.77□□□□□ -0.68
SYNE1-217ENST00000466159 DTNBO60941 627 aa10.77□□□□□ -0.68
SYNE1-217ENST00000466159 LARGE1O95461 756 aa10.77□□□□□ -0.68
SYNE1-217ENST00000466159 PRIM1P49642 420 aaKnown RBP10.77□□□□□ -0.68
SYNE1-217ENST00000466159 NMIQ13287 307 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-217ENST00000466159 UBE3BQ7Z3V4 1068 aa10.77□□□□□ -0.68
SYNE1-217ENST00000466159 JAKMIP1Q96N16 626 aaKnown RBP10.77□□□□□ -0.68
SYNE1-217ENST00000466159 GDPD2Q9HCC8 539 aa10.77□□□□□ -0.68
SYNE1-217ENST00000466159 RPAP1Q9BWH6 1393 aaPredicted RBP10.77□□□□□ -0.69
SYNE1-217ENST00000466159 CCDC171Q6TFL3 1326 aa10.77□□□□□ -0.69
SYNE1-217ENST00000466159 KDM4FA0A1W2PPD8 638 aa10.77□□□□□ -0.69
SYNE1-217ENST00000466159 NECTIN1Q15223 517 aa10.77□□□□□ -0.69
SYNE1-217ENST00000466159 WDR33Q9C0J8 1336 aaKnown RBP10.76□□□□□ -0.69
SYNE1-217ENST00000466159 RBSNQ9H1K0 784 aa10.76□□□□□ -0.69
SYNE1-217ENST00000466159 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-217ENST00000466159 RBM8AQ9Y5S9 174 aaKnown RBP10.76□□□□□ -0.69
SYNE1-217ENST00000466159 PKD1L3Q7Z443 1732 aa10.76□□□□□ -0.69
SYNE1-217ENST00000466159 AFDNP55196 1824 aaKnown RBP10.76□□□□□ -0.69
SYNE1-217ENST00000466159 ERBB4Q15303 1308 aa10.76□□□□□ -0.69
SYNE1-217ENST00000466159 A0A0D9SFI3 127 aa10.76□□□□□ -0.69
SYNE1-217ENST00000466159 RFX5P48382 616 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-217ENST00000466159 PTPN12Q05209 780 aaKnown RBP10.76□□□□□ -0.69
SYNE1-217ENST00000466159 EDC3Q96F86 508 aaKnown RBP10.76□□□□□ -0.69
SYNE1-217ENST00000466159 FSD1Q9BTV5 496 aa10.76□□□□□ -0.69
SYNE1-217ENST00000466159 PDRG1Q9NUG6 133 aa10.76□□□□□ -0.69
SYNE1-217ENST00000466159 ABCC6O95255 1503 aa10.76□□□□□ -0.69
SYNE1-217ENST00000466159 CPDO75976 1380 aa10.76□□□□□ -0.69
SYNE1-217ENST00000466159 A0A087WZG4 1122 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 SYCE3A1L190 88 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 COL9A3Q14050 684 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-217ENST00000466159 MAP4K1Q92918 833 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 KCNB2Q92953 911 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 TRIM44Q96DX7 344 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-217ENST00000466159 ZSWIM6Q9HCJ5 1215 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 COPRSQ9NQ92 184 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 GADD45BO75293 160 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-217ENST00000466159 KCNJ4P48050 445 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 TFCP2Q12800 502 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 CREB3L3Q68CJ9 461 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 BRINP3Q76B58 766 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 DBNLQ9UJU6 430 aaKnown RBP10.75□□□□□ -0.69
SYNE1-217ENST00000466159 CYP46A1Q9Y6A2 500 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 ARFGEF2Q9Y6D5 1785 aa10.75□□□□□ -0.69
SYNE1-217ENST00000466159 NBPF26B4DH59 902 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 HIP1O00291 1037 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 MBD3O95983 291 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 SYT1P21579 422 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 CCDC173Q0VFZ6 552 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 NBPF14Q5TI25 921 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 VPS53Q5VIR6 699 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 NBPF10Q6P3W6 841 aaKnown RBP10.74□□□□□ -0.69
SYNE1-217ENST00000466159 CCDC83Q8IWF9 413 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 NBPF15Q8N660 670 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 PLBD2Q8NHP8 589 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 NDUFB9Q9Y6M9 179 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 ESPNB1AK53 854 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 ZKSCAN1P17029 563 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-217ENST00000466159 RABL6Q3YEC7 729 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-217ENST00000466159 TOM1L2Q6ZVM7 507 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 USP48Q86UV5 1035 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 PPP1R9BQ96SB3 815 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 TM6SF1Q9BZW5 370 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 PRDM11Q9NQV5 511 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 SMC3Q9UQE7 1217 aa10.74□□□□□ -0.69
SYNE1-217ENST00000466159 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-217ENST00000466159 SLC27A2O14975 620 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 STX6O43752 255 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 GLI3P10071 1580 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 CLCN1P35523 988 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 CASP7P55210 303 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 TNNI3KQ59H18 835 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 LRSAM1Q6UWE0 723 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 ZNF589Q86UQ0 364 aaPredicted RBP10.73□□□□□ -0.69
SYNE1-217ENST00000466159 ZCRB1Q8TBF4 217 aaKnown RBP10.73□□□□□ -0.69
SYNE1-217ENST00000466159 TAF6LQ9Y6J9 622 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 FPGT-TNNI3KV9GXZ4 949 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 ZSCAN22P10073 491 aaPredicted RBP10.73□□□□□ -0.69
SYNE1-217ENST00000466159 TTLL7Q6ZT98 887 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 ANP32BQ92688 251 aaKnown RBP10.73□□□□□ -0.69
SYNE1-217ENST00000466159 SNRKQ9NRH2 765 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 PLEKHG2Q9H7P9 1386 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 WDR17Q8IZU2 1322 aa10.73□□□□□ -0.69
SYNE1-217ENST00000466159 CHGBP05060 677 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 ST3GAL1Q11201 340 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 ME3Q16798 604 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 LMBR1LQ6UX01 489 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 NECAB1Q8N987 351 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 CNPY2Q9Y2B0 182 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 A1BGP04217 495 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 ATP5JP18859 108 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 GJB2P29033 226 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 TCEANC2Q96MN5 208 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 DBNDD2Q9BQY9 259 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 CHMP3Q9Y3E7 222 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 XIRP1Q702N8 1843 aaKnown RBP10.72□□□□□ -0.69
SYNE1-217ENST00000466159 MED23Q9ULK4 1368 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 PCDH11XQ9BZA7 1347 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 PCDH11YQ9BZA8 1340 aa10.72□□□□□ -0.69
SYNE1-217ENST00000466159 TPRNQ4KMQ1 711 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms