RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 METTL22Q9BUU2 404 aaPredicted RBP9.18□□□□□ -0.94
USP54-210ENST00000466048 COL14A1Q05707 1796 aaKnown RBP9.18□□□□□ -0.94
USP54-210ENST00000466048 TRIM6-TRIM34B2RNG4 842 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 PDE1AP54750 535 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 RABEP1Q15276 862 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 ANKRD13DQ6ZTN6 518 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 RPGRQ92834 1020 aaKnown RBP9.18□□□□□ -0.94
USP54-210ENST00000466048 FAM13BQ9NYF5 915 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 ADCY9O60503 1353 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 SNX21Q969T3 373 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 CDC5LQ99459 802 aaKnown RBP9.17□□□□□ -0.94
USP54-210ENST00000466048 CHMP5Q9NZZ3 219 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 EXOC6BQ9Y2D4 811 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 NFKBIBQ15653 356 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 ZNF496Q96IT1 587 aaPredicted RBP9.17□□□□□ -0.94
USP54-210ENST00000466048 STAP2Q9UGK3 403 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 AHDC1Q5TGY3 1603 aaPredicted RBP9.17□□□□□ -0.94
USP54-210ENST00000466048 SEC24BO95487 1268 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 SLC39A6Q13433 755 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 PLBD2Q8NHP8 589 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 FBXO41Q8TF61 875 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 TFCP2L1Q9NZI6 479 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 TTC41PQ6P2S7 1318 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 NOM1Q5C9Z4 860 aaKnown RBP9.17□□□□□ -0.94
USP54-210ENST00000466048 KRT27Q7Z3Y8 459 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 XAGE3Q8WTP9 111 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 ARID3AQ99856 593 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 KIF3AQ9Y496 699 aa9.17□□□□□ -0.94
USP54-210ENST00000466048 ABCA3Q99758 1704 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 CNTROBQ8N137 903 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 UTYO14607 1347 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 HIP1O00291 1037 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 SMARCA5O60264 1052 aaPredicted RBP9.16□□□□□ -0.94
USP54-210ENST00000466048 TPM4P67936 248 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 HMGN5P82970 282 aaKnown RBP9.16□□□□□ -0.94
USP54-210ENST00000466048 CCDC158Q5M9N0 1113 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 CEP126Q9P2H0 1117 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 CCNL1Q9UK58 526 aaPredicted RBP9.16□□□□□ -0.94
USP54-210ENST00000466048 AKAP2Q9Y2D5 859 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 PARP3Q9Y6F1 533 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 COPS6Q7L5N1 327 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 RHPN1Q8TCX5 695 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 SETDB2Q96T68 719 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 DIAPH3Q9NSV4 1193 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 ST18O60284 1047 aa9.16□□□□□ -0.94
USP54-210ENST00000466048 GLRX3O76003 335 aaKnown RBP9.15□□□□□ -0.94
USP54-210ENST00000466048 SDSP20132 328 aa9.15□□□□□ -0.94
USP54-210ENST00000466048 TRAPPC3LQ5T215 181 aa9.15□□□□□ -0.94
USP54-210ENST00000466048 ZSCAN25Q6NSZ9 544 aa9.15□□□□□ -0.94
USP54-210ENST00000466048 PNMA6EA0A0J9YXQ4 647 aa9.15□□□□□ -0.94
USP54-210ENST00000466048 MYD88Q99836 296 aa9.15□□□□□ -0.94
USP54-210ENST00000466048 PARP10Q53GL7 1025 aa9.15□□□□□ -0.95
USP54-210ENST00000466048 TRMT112Q9UI30 125 aaKnown RBP9.15□□□□□ -0.95
USP54-210ENST00000466048 AFF2P51816 1311 aa9.15□□□□□ -0.95
USP54-210ENST00000466048 LAMB4A4D0S4 1761 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 APBA3O96018 575 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 ANXA1P04083 346 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 TPTE2Q6XPS3 522 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 DDX46Q7L014 1031 aaKnown RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 SPRYD3Q8NCJ5 442 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 CWC25Q9NXE8 425 aaPredicted RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 DDX49Q9Y6V7 483 aaKnown RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 COL15A1P39059 1388 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 GSPT1P15170 499 aaKnown RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 MCM2P49736 904 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP54-210ENST00000466048 CIZ1Q9ULV3 898 aaPredicted RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 NEURL1BA8MQ27 555 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 IFIT1P09914 478 aaKnown RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 NBPF7P0C2Y1 421 aaPredicted RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 GCKRQ14397 625 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 NBPF5PQ86XG9 351 aaPredicted RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 SLF2Q8IX21 1173 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 RILPL2Q969X0 211 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 TOMM22Q9NS69 142 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 TMOD2Q9NZR1 351 aa9.14□□□□□ -0.95
USP54-210ENST00000466048 COL22A1Q8NFW1 1626 aaPredicted RBP9.14□□□□□ -0.95
USP54-210ENST00000466048 PROSER3Q2NL68 480 aa9.13□□□□□ -0.95
USP54-210ENST00000466048 RNF20Q5VTR2 975 aa9.13□□□□□ -0.95
USP54-210ENST00000466048 C16orf71Q8IYS4 520 aaPredicted RBP9.13□□□□□ -0.95
USP54-210ENST00000466048 NEUROD6Q96NK8 337 aa9.13□□□□□ -0.95
USP54-210ENST00000466048 TBC1D2Q9BYX2 928 aa9.13□□□□□ -0.95
USP54-210ENST00000466048 SLC3A2P08195 630 aaKnown RBP9.13□□□□□ -0.95
USP54-210ENST00000466048 PDIA6Q15084 440 aa9.13□□□□□ -0.95
USP54-210ENST00000466048 ANKRD18BA2A2Z9 1011 aa9.13□□□□□ -0.95
USP54-210ENST00000466048 IFIT5Q13325 482 aaKnown RBP9.13□□□□□ -0.95
USP54-210ENST00000466048 CPLX2Q6PUV4 134 aaKnown RBP9.13□□□□□ -0.95
USP54-210ENST00000466048 NLRP3Q96P20 1036 aa9.13□□□□□ -0.95
USP54-210ENST00000466048 CTDP1Q9Y5B0 961 aaPredicted RBP9.13□□□□□ -0.95
USP54-210ENST00000466048 ROBO1Q9Y6N7 1651 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 TPM3P06753 285 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 ECHDC1Q9NTX5 307 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 APPP05067 770 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 SLC4A3P48751 1232 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 ANAPC15P60006 121 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 CCDC152Q4G0S7 254 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 SYNE3Q6ZMZ3 975 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 TRDNQ13061 729 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 CAVIN4Q5BKX8 364 aa9.12□□□□□ -0.95
USP54-210ENST00000466048 CCDC191Q8NCU4 936 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms