RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 NECTIN2Q92692 538 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 NLRP3Q96P20 1036 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 CRAMP1Q96RY5 1269 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 UTP14AQ9BVJ6 771 aaKnown RBP9.47□□□□□ -0.89
PTPRF-210ENST00000463041 IFT57Q9NWB7 429 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 DBF4Q9UBU7 674 aaPredicted RBP9.47□□□□□ -0.89
PTPRF-210ENST00000463041 UBN2Q6ZU65 1347 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 IBTKQ9P2D0 1353 aaPredicted RBP9.47□□□□□ -0.89
PTPRF-210ENST00000463041 NTSR2O95665 410 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 APLP1P51693 650 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 FKBP4Q02790 459 aaKnown RBP eCLIP9.46□□□□□ -0.9
PTPRF-210ENST00000463041 KRT24Q2M2I5 525 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 HDGFL1Q5TGJ6 251 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 DUSP27Q5VZP5 1158 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 ANKRD13DQ6ZTN6 518 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 RPGRQ92834 1020 aaKnown RBP9.46□□□□□ -0.9
PTPRF-210ENST00000463041 RBM17Q96I25 401 aaKnown RBP9.46□□□□□ -0.9
PTPRF-210ENST00000463041 MBIPQ9NS73 344 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 HYPKQ9NX55 129 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 RNF123Q5XPI4 1314 aa9.46□□□□□ -0.9
PTPRF-210ENST00000463041 NCBP3Q53F19 620 aaKnown RBP9.45□□□□□ -0.9
PTPRF-210ENST00000463041 NLRP10Q86W26 655 aa9.45□□□□□ -0.9
PTPRF-210ENST00000463041 SYNE4Q8N205 404 aa9.45□□□□□ -0.9
PTPRF-210ENST00000463041 PLBD2Q8NHP8 589 aa9.45□□□□□ -0.9
PTPRF-210ENST00000463041 CHPF2Q9P2E5 772 aa9.45□□□□□ -0.9
PTPRF-210ENST00000463041 RIC1Q4ADV7 1423 aa9.45□□□□□ -0.9
PTPRF-210ENST00000463041 TNRC6CQ9HCJ0 1690 aaKnown RBP9.45□□□□□ -0.9
PTPRF-210ENST00000463041 POTECB2RU33 542 aa9.44□□□□□ -0.9
PTPRF-210ENST00000463041 ANP32CO43423 234 aa9.44□□□□□ -0.9
PTPRF-210ENST00000463041 BBOX1O75936 387 aa9.44□□□□□ -0.9
PTPRF-210ENST00000463041 TRIM28Q13263 835 aaKnown RBP9.44□□□□□ -0.9
PTPRF-210ENST00000463041 CCDC27Q2M243 656 aa9.44□□□□□ -0.9
PTPRF-210ENST00000463041 CCDC184Q52MB2 194 aa9.44□□□□□ -0.9
PTPRF-210ENST00000463041 SMC1BQ8NDV3 1235 aa9.44□□□□□ -0.9
PTPRF-210ENST00000463041 PSMD1Q99460 953 aa9.44□□□□□ -0.9
PTPRF-210ENST00000463041 TMX4Q9H1E5 349 aaPredicted RBP9.44□□□□□ -0.9
PTPRF-210ENST00000463041 TRMT112Q9UI30 125 aaKnown RBP9.44□□□□□ -0.9
PTPRF-210ENST00000463041 ABCC12Q96J65 1359 aa9.43□□□□□ -0.9
PTPRF-210ENST00000463041 DDNO94850 711 aaPredicted RBP9.43□□□□□ -0.9
PTPRF-210ENST00000463041 OLFM4Q6UX06 510 aa9.43□□□□□ -0.9
PTPRF-210ENST00000463041 VPS33BQ9H267 617 aa9.43□□□□□ -0.9
PTPRF-210ENST00000463041 ZNF277Q9NRM2 450 aaPredicted RBP9.43□□□□□ -0.9
PTPRF-210ENST00000463041 SH3TC1Q8TE82 1336 aa9.42□□□□□ -0.9
PTPRF-210ENST00000463041 ELL2O00472 640 aaPredicted RBP9.42□□□□□ -0.9
PTPRF-210ENST00000463041 IARSP41252 1262 aaKnown RBP9.42□□□□□ -0.9
PTPRF-210ENST00000463041 CCDC30Q5VVM6 783 aa9.42□□□□□ -0.9
PTPRF-210ENST00000463041 DNAJC5GQ8N7S2 189 aa9.42□□□□□ -0.9
PTPRF-210ENST00000463041 JDP2Q8WYK2 163 aa9.42□□□□□ -0.9
PTPRF-210ENST00000463041 ISCA1Q9BUE6 129 aa9.42□□□□□ -0.9
PTPRF-210ENST00000463041 ANKRD36CQ5JPF3 1778 aa9.42□□□□□ -0.9
PTPRF-210ENST00000463041 TIAM2Q8IVF5 1701 aa9.42□□□□□ -0.9
PTPRF-210ENST00000463041 WDR90Q96KV7 1748 aa9.42□□□□□ -0.9
PTPRF-210ENST00000463041 IQCA1LA6NCM1 817 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 FZD9O00144 591 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 PPEF1O14829 653 aaPredicted RBP9.41□□□□□ -0.9
PTPRF-210ENST00000463041 HCLS1P14317 486 aaPredicted RBP9.41□□□□□ -0.9
PTPRF-210ENST00000463041 C3orf67Q6ZVT6 689 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 DDX46Q7L014 1031 aaKnown RBP9.41□□□□□ -0.9
PTPRF-210ENST00000463041 RIC3Q7Z5B4 369 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 WWC1Q8IX03 1113 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 SP8Q8IXZ3 490 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 C8orf58Q8NAV2 365 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 L3MBTL3Q96JM7 780 aaPredicted RBP9.41□□□□□ -0.9
PTPRF-210ENST00000463041 MRS2Q9HD23 443 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 ATP6V0A2Q9Y487 856 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 CACNA1FO60840 1977 aa9.41□□□□□ -0.9
PTPRF-210ENST00000463041 SCN4AP35499 1836 aa9.4□□□□□ -0.9
PTPRF-210ENST00000463041 IL16Q14005 1332 aa9.4□□□□□ -0.9
PTPRF-210ENST00000463041 ATP5J2-PTCD1G3V325 749 aa9.4□□□□□ -0.9
PTPRF-210ENST00000463041 TCERG1O14776 1098 aaKnown RBP9.4□□□□□ -0.9
PTPRF-210ENST00000463041 DDX58O95786 925 aaKnown RBP9.4□□□□□ -0.9
PTPRF-210ENST00000463041 HSP90B1P14625 803 aaKnown RBP9.4□□□□□ -0.9
PTPRF-210ENST00000463041 GOLGA2Q08379 1002 aa9.4□□□□□ -0.9
PTPRF-210ENST00000463041 SF3B3Q15393 1217 aaKnown RBP9.4□□□□□ -0.9
PTPRF-210ENST00000463041 TMC4Q7Z404 712 aa9.4□□□□□ -0.9
PTPRF-210ENST00000463041 SUPT20HQ8NEM7 779 aa9.4□□□□□ -0.9
PTPRF-210ENST00000463041 PHAXQ9H814 394 aaKnown RBP9.4□□□□□ -0.9
PTPRF-210ENST00000463041 EIF6P56537 245 aaKnown RBP9.39□□□□□ -0.91
PTPRF-210ENST00000463041 GRAPQ13588 217 aa9.39□□□□□ -0.91
PTPRF-210ENST00000463041 CHADLQ6NUI6 762 aa9.39□□□□□ -0.91
PTPRF-210ENST00000463041 WDR63Q8IWG1 891 aa9.39□□□□□ -0.91
PTPRF-210ENST00000463041 GPC2Q8N158 579 aa9.39□□□□□ -0.91
PTPRF-210ENST00000463041 LARGE2Q8N3Y3 721 aa9.39□□□□□ -0.91
PTPRF-210ENST00000463041 CCDC191Q8NCU4 936 aa9.39□□□□□ -0.91
PTPRF-210ENST00000463041 GRAPLQ8TC17 118 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-210ENST00000463041 FAM89AQ96GI7 184 aa9.39□□□□□ -0.91
PTPRF-210ENST00000463041 TAF1DQ9H5J8 278 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-210ENST00000463041 SNED1Q8TER0 1413 aa9.39□□□□□ -0.91
PTPRF-210ENST00000463041 PCNTO95613 3336 aa9.38□□□□□ -0.91
PTPRF-210ENST00000463041 ABCC4O15439 1325 aa9.38□□□□□ -0.91
PTPRF-210ENST00000463041 MPNDQ8N594 471 aa9.38□□□□□ -0.91
PTPRF-210ENST00000463041 TSPYL6Q8N831 410 aa9.38□□□□□ -0.91
PTPRF-210ENST00000463041 ZBTB38Q8NAP3 1195 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-210ENST00000463041 RTFDC1Q9BY42 306 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-210ENST00000463041 HACL1Q9UJ83 578 aa9.38□□□□□ -0.91
PTPRF-210ENST00000463041 TAF1P21675 1872 aa9.38□□□□□ -0.91
PTPRF-210ENST00000463041 LAMB2P55268 1798 aa9.37□□□□□ -0.91
PTPRF-210ENST00000463041 ZNF541Q9H0D2 1346 aa9.37□□□□□ -0.91
PTPRF-210ENST00000463041 IRS4O14654 1257 aaPredicted RBP9.37□□□□□ -0.91
PTPRF-210ENST00000463041 TWISTNBQ3B726 338 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms