RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 TSPY4P0CV99 314 aa6.73□□□□□ -1.33
CSMD3-205ENST00000462254 TSPY10P0CW01 314 aa6.73□□□□□ -1.33
CSMD3-205ENST00000462254 PTK7Q13308 1070 aa6.73□□□□□ -1.33
CSMD3-205ENST00000462254 ESCO1Q5FWF5 840 aa6.73□□□□□ -1.33
CSMD3-205ENST00000462254 FHDC1Q9C0D6 1143 aaPredicted RBP6.73□□□□□ -1.33
CSMD3-205ENST00000462254 GRIP2Q9C0E4 1043 aa6.73□□□□□ -1.33
CSMD3-205ENST00000462254 ZNF358Q9NW07 568 aa6.73□□□□□ -1.33
CSMD3-205ENST00000462254 CFAP65Q6ZU64 1925 aaKnown RBP6.73□□□□□ -1.33
CSMD3-205ENST00000462254 YEATS2Q9ULM3 1422 aa6.73□□□□□ -1.33
CSMD3-205ENST00000462254 SPAG9O60271 1321 aaKnown RBP6.73□□□□□ -1.33
CSMD3-205ENST00000462254 KDM5DQ9BY66 1539 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 RBM47A0AV96 593 aaKnown RBP6.72□□□□□ -1.33
CSMD3-205ENST00000462254 UNCXA6NJT0 531 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 SFI1A8K8P3 1242 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 WASLO00401 505 aaPredicted RBP6.72□□□□□ -1.33
CSMD3-205ENST00000462254 RAPGEF3O95398 923 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 ATP1A2P50993 1020 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 SLC27A3Q5K4L6 730 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 LARGE2Q8N3Y3 721 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 ERBINQ96RT1 1412 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 ANKRD50Q9ULJ7 1429 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 REREQ9P2R6 1566 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 MAGI2Q86UL8 1455 aa6.72□□□□□ -1.33
CSMD3-205ENST00000462254 PRDM15P57071 1507 aaPredicted RBP6.71□□□□□ -1.33
CSMD3-205ENST00000462254 USP17L15C9J2P7 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L10C9JJH3 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L13C9JLJ4 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L12C9JPN9 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L11C9JVI0 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L21D6R901 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L18D6R9N7 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L22D6RA61 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L17D6RBQ6 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L19D6RCP7 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L20D6RJB6 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 EIF5BO60841 1220 aaKnown RBP6.71□□□□□ -1.34
CSMD3-205ENST00000462254 RHOQP17081 205 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 GPC1P35052 558 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP17L24Q0WX57 530 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 POU4F2Q12837 409 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.71□□□□□ -1.34
CSMD3-205ENST00000462254 LARP1Q6PKG0 1096 aaKnown RBP6.71□□□□□ -1.34
CSMD3-205ENST00000462254 LYSMD3Q7Z3D4 306 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 SIX5Q8N196 739 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 SLC4A9Q96Q91 983 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 USP3Q9Y6I4 520 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 A2MP01023 1474 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 E9PCH4 1651 aa6.71□□□□□ -1.34
CSMD3-205ENST00000462254 DHX57Q6P158 1386 aaKnown RBP6.7□□□□□ -1.34
CSMD3-205ENST00000462254 FAM196BA6NMK8 535 aa6.7□□□□□ -1.34
CSMD3-205ENST00000462254 SMTNP53814 917 aa6.7□□□□□ -1.34
CSMD3-205ENST00000462254 PTSQ03393 145 aa6.7□□□□□ -1.34
CSMD3-205ENST00000462254 DPYDQ12882 1025 aa6.7□□□□□ -1.34
CSMD3-205ENST00000462254 TLR1Q15399 786 aa6.7□□□□□ -1.34
CSMD3-205ENST00000462254 TNS4Q8IZW8 715 aa6.7□□□□□ -1.34
CSMD3-205ENST00000462254 ZSCAN10Q96SZ4 725 aaPredicted RBP6.7□□□□□ -1.34
CSMD3-205ENST00000462254 GNEQ9Y223 722 aaKnown RBP6.7□□□□□ -1.34
CSMD3-205ENST00000462254 PZPP20742 1482 aa6.7□□□□□ -1.34
CSMD3-205ENST00000462254 TET3O43151 1660 aa6.7□□□□□ -1.34
CSMD3-205ENST00000462254 ZC3H13Q5T200 1668 aaKnown RBP6.7□□□□□ -1.34
CSMD3-205ENST00000462254 VWDEQ8N2E2 1590 aa6.69□□□□□ -1.34
CSMD3-205ENST00000462254 SENP3-EIF4A1A0A087X0R7 540 aa6.69□□□□□ -1.34
CSMD3-205ENST00000462254 LGR5O75473 907 aa6.69□□□□□ -1.34
CSMD3-205ENST00000462254 VEGFBP49765 207 aa6.69□□□□□ -1.34
CSMD3-205ENST00000462254 ANKMY2Q8IV38 441 aa6.69□□□□□ -1.34
CSMD3-205ENST00000462254 FAM177A1Q8N128 213 aaPredicted RBP6.69□□□□□ -1.34
CSMD3-205ENST00000462254 TSEN2Q8NCE0 465 aaKnown RBP6.69□□□□□ -1.34
CSMD3-205ENST00000462254 SPHKAPQ2M3C7 1700 aa6.69□□□□□ -1.34
CSMD3-205ENST00000462254 DHX29Q7Z478 1369 aaKnown RBP6.69□□□□□ -1.34
CSMD3-205ENST00000462254 CAMSAP1Q5T5Y3 1602 aa6.68□□□□□ -1.34
CSMD3-205ENST00000462254 FAM135AQ9P2D6 1515 aa6.68□□□□□ -1.34
CSMD3-205ENST00000462254 A6NJY4 79 aa6.68□□□□□ -1.34
CSMD3-205ENST00000462254 PHKA2P46019 1235 aa6.68□□□□□ -1.34
CSMD3-205ENST00000462254 EPHA4P54764 986 aa6.68□□□□□ -1.34
CSMD3-205ENST00000462254 TBCELQ5QJ74 424 aa6.68□□□□□ -1.34
CSMD3-205ENST00000462254 TMEM214Q6NUQ4 689 aaKnown RBP6.68□□□□□ -1.34
CSMD3-205ENST00000462254 NBPF10Q6P3W6 841 aaKnown RBP6.68□□□□□ -1.34
CSMD3-205ENST00000462254 NBPF15Q8N660 670 aa6.68□□□□□ -1.34
CSMD3-205ENST00000462254 ZMIZ1Q9ULJ6 1067 aa6.68□□□□□ -1.34
CSMD3-205ENST00000462254 IQSEC3Q9UPP2 1182 aaPredicted RBP6.68□□□□□ -1.34
CSMD3-205ENST00000462254 CLTCQ00610 1675 aaKnown RBP6.68□□□□□ -1.34
CSMD3-205ENST00000462254 ATP10AO60312 1499 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 FER1L4A9Z1Z3 1794 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 AGLP35573 1532 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 SPATA31C2B4DYI2 1134 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 BACH1O14867 736 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 SEC13P55735 322 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 MTFR1Q15390 333 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 C4orf17Q53FE4 359 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 ZNF295-AS1Q8N0V1 137 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 GAS2L2Q8NHY3 880 aa6.67□□□□□ -1.34
CSMD3-205ENST00000462254 ZNF775Q96BV0 537 aaPredicted RBP6.67□□□□□ -1.34
CSMD3-205ENST00000462254 SCHIP1Q9P0W5 487 aaPredicted RBP6.67□□□□□ -1.34
CSMD3-205ENST00000462254 NOVA2Q9UNW9 492 aaKnown RBP6.67□□□□□ -1.34
CSMD3-205ENST00000462254 SLC35F4A4IF30 521 aa6.66□□□□□ -1.34
CSMD3-205ENST00000462254 CARNS1A5YM72 827 aa6.66□□□□□ -1.34
CSMD3-205ENST00000462254 TMEM88BA6NKF7 163 aa6.66□□□□□ -1.34
CSMD3-205ENST00000462254 CDK2AP1O14519 115 aa6.66□□□□□ -1.34
CSMD3-205ENST00000462254 ERCC3P19447 782 aa6.66□□□□□ -1.34
CSMD3-205ENST00000462254 FOXK2Q01167 660 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms