RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TIAM2Q8IVF5 1701 aa15.2■□□□□ 0.02
VPS52-213ENST00000461743 DALRD3Q5D0E6 543 aaKnown RBP15.19■□□□□ 0.02
VPS52-213ENST00000461743 STYK1Q6J9G0 422 aa15.19■□□□□ 0.02
VPS52-213ENST00000461743 RIC3Q7Z5B4 369 aa15.19■□□□□ 0.02
VPS52-213ENST00000461743 NLRP10Q86W26 655 aa15.19■□□□□ 0.02
VPS52-213ENST00000461743 ISCA1Q9BUE6 129 aa15.19■□□□□ 0.02
VPS52-213ENST00000461743 UTP14AQ9BVJ6 771 aaKnown RBP15.19■□□□□ 0.02
VPS52-213ENST00000461743 LRRC37AA6NMS7 1700 aa15.19■□□□□ 0.02
VPS52-213ENST00000461743 ADCY9O60503 1353 aa15.19■□□□□ 0.02
VPS52-213ENST00000461743 SLC4A2P04920 1241 aa15.18■□□□□ 0.02
VPS52-213ENST00000461743 CHRNA5P30532 468 aa15.18■□□□□ 0.02
VPS52-213ENST00000461743 FLIIQ13045 1269 aa15.18■□□□□ 0.02
VPS52-213ENST00000461743 SUSD4Q5VX71 490 aa15.18■□□□□ 0.02
VPS52-213ENST00000461743 KSR2Q6VAB6 950 aa15.18■□□□□ 0.02
VPS52-213ENST00000461743 MASTLQ96GX5 879 aa15.18■□□□□ 0.02
VPS52-213ENST00000461743 BCS1LQ9Y276 419 aa15.18■□□□□ 0.02
VPS52-213ENST00000461743 ZBED9Q6R2W3 1325 aa15.17■□□□□ 0.02
VPS52-213ENST00000461743 SH3TC1Q8TE82 1336 aa15.17■□□□□ 0.02
VPS52-213ENST00000461743 SRGNP10124 158 aa15.17■□□□□ 0.02
VPS52-213ENST00000461743 NPR1P16066 1061 aa15.17■□□□□ 0.02
VPS52-213ENST00000461743 HNRNPUQ00839 825 aaKnown RBP eCLIP15.17■□□□□ 0.02
VPS52-213ENST00000461743 CRY2Q49AN0 593 aa15.17■□□□□ 0.02
VPS52-213ENST00000461743 TTLL6Q8N841 843 aa15.17■□□□□ 0.02
VPS52-213ENST00000461743 CNKSR1Q969H4 720 aa15.17■□□□□ 0.02
VPS52-213ENST00000461743 METTL22Q9BUU2 404 aaPredicted RBP15.17■□□□□ 0.02
VPS52-213ENST00000461743 HSP90B1P14625 803 aaKnown RBP15.16■□□□□ 0.02
VPS52-213ENST00000461743 NEXNQ0ZGT2 675 aa15.16■□□□□ 0.02
VPS52-213ENST00000461743 ERFEQ4G0M1 354 aa15.16■□□□□ 0.02
VPS52-213ENST00000461743 SLC10A5Q5PT55 438 aa15.16■□□□□ 0.02
VPS52-213ENST00000461743 CCDC191Q8NCU4 936 aa15.16■□□□□ 0.02
VPS52-213ENST00000461743 TAF1P21675 1872 aa15.15■□□□□ 0.02
VPS52-213ENST00000461743 FAM177BA6PVY3 158 aa15.15■□□□□ 0.02
VPS52-213ENST00000461743 FKBP5Q13451 457 aaPredicted RBP15.15■□□□□ 0.02
VPS52-213ENST00000461743 ALDH1L2Q3SY69 923 aa15.15■□□□□ 0.02
VPS52-213ENST00000461743 NUTM1Q86Y26 1132 aa15.15■□□□□ 0.02
VPS52-213ENST00000461743 TRMT112Q9UI30 125 aaKnown RBP15.15■□□□□ 0.02
VPS52-213ENST00000461743 MAP3K2Q9Y2U5 619 aa15.15■□□□□ 0.02
VPS52-213ENST00000461743 PI4KAP2A4QPH2 592 aa15.14■□□□□ 0.01
VPS52-213ENST00000461743 SOGA3Q5TF21 947 aa15.14■□□□□ 0.01
VPS52-213ENST00000461743 CCDC24Q8N4L8 307 aa15.14■□□□□ 0.01
VPS52-213ENST00000461743 PI4KAP1Q8N8J0 262 aa15.14■□□□□ 0.01
VPS52-213ENST00000461743 CDCA7LQ96GN5 454 aa15.14■□□□□ 0.01
VPS52-213ENST00000461743 MYD88Q99836 296 aa15.14■□□□□ 0.01
VPS52-213ENST00000461743 SPEF2Q9C093 1822 aa15.14■□□□□ 0.01
VPS52-213ENST00000461743 ALDH1B1P30837 517 aa15.13■□□□□ 0.01
VPS52-213ENST00000461743 HOXA10P31260 410 aaPredicted RBP15.13■□□□□ 0.01
VPS52-213ENST00000461743 G2E3Q7L622 706 aa15.13■□□□□ 0.01
VPS52-213ENST00000461743 DNAAF4Q8WXU2 420 aa15.13■□□□□ 0.01
VPS52-213ENST00000461743 RPGRQ92834 1020 aaKnown RBP15.13■□□□□ 0.01
VPS52-213ENST00000461743 ZNF622Q969S3 477 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS52-213ENST00000461743 NLRP3Q96P20 1036 aa15.13■□□□□ 0.01
VPS52-213ENST00000461743 CWC25Q9NXE8 425 aaPredicted RBP15.13■□□□□ 0.01
VPS52-213ENST00000461743 PTPRCP08575 1304 aa15.13■□□□□ 0.01
VPS52-213ENST00000461743 ATP5J2-PTCD1G3V325 749 aa15.12■□□□□ 0.01
VPS52-213ENST00000461743 TCERG1O14776 1098 aaKnown RBP15.12■□□□□ 0.01
VPS52-213ENST00000461743 PRPF40BQ6NWY9 871 aaKnown RBP15.12■□□□□ 0.01
VPS52-213ENST00000461743 ZBTB38Q8NAP3 1195 aaPredicted RBP15.12■□□□□ 0.01
VPS52-213ENST00000461743 CDHR2Q9BYE9 1310 aa15.12■□□□□ 0.01
VPS52-213ENST00000461743 PCCAP05165 728 aaPredicted RBP15.11■□□□□ 0.01
VPS52-213ENST00000461743 WWC3Q9ULE0 1092 aa15.11■□□□□ 0.01
VPS52-213ENST00000461743 LTBP3Q9NS15 1303 aa15.11■□□□□ 0.01
VPS52-213ENST00000461743 LTBP1Q14766 1721 aa15.1■□□□□ 0.01
VPS52-213ENST00000461743 NEURL1BA8MQ27 555 aa15.1■□□□□ 0.01
VPS52-213ENST00000461743 IGKV5-2P06315 115 aa15.1■□□□□ 0.01
VPS52-213ENST00000461743 YY1P25490 414 aa15.1■□□□□ 0.01
VPS52-213ENST00000461743 BRPF1P55201 1214 aaPredicted RBP15.1■□□□□ 0.01
VPS52-213ENST00000461743 MRPL50Q8N5N7 158 aaKnown RBP15.1■□□□□ 0.01
VPS52-213ENST00000461743 LINS1Q8NG48 757 aa15.1■□□□□ 0.01
VPS52-213ENST00000461743 RBM17Q96I25 401 aaKnown RBP15.1■□□□□ 0.01
VPS52-213ENST00000461743 CRAMP1Q96RY5 1269 aa15.1■□□□□ 0.01
VPS52-213ENST00000461743 SNED1Q8TER0 1413 aa15.09■□□□□ 0.01
VPS52-213ENST00000461743 A0A1B0GUL6 1792 aa15.09■□□□□ 0.01
VPS52-213ENST00000461743 SSH1Q8WYL5 1049 aa15.09■□□□□ 0.01
VPS52-213ENST00000461743 ZC3H4Q9UPT8 1303 aaKnown RBP15.09■□□□□ 0.01
VPS52-213ENST00000461743 IRS4O14654 1257 aaPredicted RBP15.08■□□□□ 0
VPS52-213ENST00000461743 GRIPAP1Q4V328 841 aa15.08■□□□□ 0
VPS52-213ENST00000461743 CC2D2BQ6DHV5 1058 aa15.08■□□□□ 0
VPS52-213ENST00000461743 TMC4Q7Z404 712 aa15.08■□□□□ 0
VPS52-213ENST00000461743 FAM89AQ96GI7 184 aa15.08■□□□□ 0
VPS52-213ENST00000461743 SMC4Q9NTJ3 1288 aa15.08■□□□□ 0
VPS52-213ENST00000461743 KIF16BQ96L93 1317 aa15.08■□□□□ 0
VPS52-213ENST00000461743 HCLS1P14317 486 aaPredicted RBP15.07■□□□□ 0
VPS52-213ENST00000461743 SF3B3Q15393 1217 aaKnown RBP15.07■□□□□ 0
VPS52-213ENST00000461743 CCDC93Q567U6 631 aa15.07■□□□□ 0
VPS52-213ENST00000461743 ARHGAP27Q6ZUM4 889 aa15.07■□□□□ 0
VPS52-213ENST00000461743 C7orf43Q8WVR3 580 aa15.07■□□□□ 0
VPS52-213ENST00000461743 ABCC4O15439 1325 aa15.07■□□□□ 0
VPS52-213ENST00000461743 RTL9Q8NET4 1388 aa15.07■□□□□ 0
VPS52-213ENST00000461743 PDE8AO60658 829 aa15.06■□□□□ 0
VPS52-213ENST00000461743 ALDH1L1O75891 902 aa15.06■□□□□ 0
VPS52-213ENST00000461743 GCKRQ14397 625 aa15.06■□□□□ 0
VPS52-213ENST00000461743 CWF19L2Q2TBE0 894 aaKnown RBP15.06■□□□□ 0
VPS52-213ENST00000461743 C3orf67Q6ZVT6 689 aa15.06■□□□□ 0
VPS52-213ENST00000461743 DDX46Q7L014 1031 aaKnown RBP15.06■□□□□ 0
VPS52-213ENST00000461743 PPEF1O14829 653 aaPredicted RBP15.05■□□□□ -0
VPS52-213ENST00000461743 C21orf2O43822 256 aa15.05■□□□□ -0
VPS52-213ENST00000461743 GRAPQ13588 217 aa15.05■□□□□ -0
VPS52-213ENST00000461743 BEND3Q5T5X7 828 aa15.05■□□□□ -0
VPS52-213ENST00000461743 RTKN2Q8IZC4 609 aa15.05■□□□□ -0
VPS52-213ENST00000461743 SYNE4Q8N205 404 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms