RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 BTBD11A6QL63 1104 aa11.59□□□□□ -0.55
HDAC9-220ENST00000461409 EIF5P55010 431 aaKnown RBP11.59□□□□□ -0.55
HDAC9-220ENST00000461409 DSG2Q14126 1118 aa11.59□□□□□ -0.55
HDAC9-220ENST00000461409 ARSIQ5FYB1 569 aa11.59□□□□□ -0.55
HDAC9-220ENST00000461409 RTF1Q92541 710 aaKnown RBP11.59□□□□□ -0.55
HDAC9-220ENST00000461409 PHACTR3Q96KR7 559 aa11.59□□□□□ -0.55
HDAC9-220ENST00000461409 BRCA1P38398 1863 aaKnown RBP11.58□□□□□ -0.56
HDAC9-220ENST00000461409 CHRNA5P30532 468 aa11.58□□□□□ -0.56
HDAC9-220ENST00000461409 BCL2L12Q9HB09 334 aa11.58□□□□□ -0.56
HDAC9-220ENST00000461409 SERPINB2P05120 415 aa11.57□□□□□ -0.56
HDAC9-220ENST00000461409 IL6STP40189 918 aaPredicted RBP11.57□□□□□ -0.56
HDAC9-220ENST00000461409 C9orf131Q5VYM1 1079 aa11.57□□□□□ -0.56
HDAC9-220ENST00000461409 PLPP6Q8IY26 295 aa11.57□□□□□ -0.56
HDAC9-220ENST00000461409 KHSRPQ92945 711 aaKnown RBP eCLIP11.57□□□□□ -0.56
HDAC9-220ENST00000461409 ARFGEF1Q9Y6D6 1849 aa11.57□□□□□ -0.56
HDAC9-220ENST00000461409 SIPA1L3O60292 1781 aaPredicted RBP11.56□□□□□ -0.56
HDAC9-220ENST00000461409 HTATSF1O43719 755 aaKnown RBP11.56□□□□□ -0.56
HDAC9-220ENST00000461409 NEFMP07197 916 aa11.56□□□□□ -0.56
HDAC9-220ENST00000461409 HSPA6P17066 643 aa11.56□□□□□ -0.56
HDAC9-220ENST00000461409 RNF166Q96A37 237 aaPredicted RBP11.56□□□□□ -0.56
HDAC9-220ENST00000461409 PDZRN3Q9UPQ7 1066 aa11.56□□□□□ -0.56
HDAC9-220ENST00000461409 ZNF330Q9Y3S2 320 aaPredicted RBP11.56□□□□□ -0.56
HDAC9-220ENST00000461409 CARMIL3Q8ND23 1372 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 NRXN2Q9P2S2 1712 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 H0YIN7 160 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 BICDL1Q6ZP65 573 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 C2CD5Q86YS7 1000 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 TTLL6Q8N841 843 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 RNF181Q9P0P0 153 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 PCDHGA4Q9Y5G9 962 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 KDM2BQ8NHM5 1336 aa11.55□□□□□ -0.56
HDAC9-220ENST00000461409 ZC3H4Q9UPT8 1303 aaKnown RBP11.55□□□□□ -0.56
HDAC9-220ENST00000461409 TOMM70O94826 608 aa11.54□□□□□ -0.56
HDAC9-220ENST00000461409 A1BGP04217 495 aa11.54□□□□□ -0.56
HDAC9-220ENST00000461409 SNRPA1P09661 255 aaKnown RBP11.54□□□□□ -0.56
HDAC9-220ENST00000461409 TBC1D9BQ66K14 1250 aa11.54□□□□□ -0.56
HDAC9-220ENST00000461409 MCM10Q7L590 875 aa11.54□□□□□ -0.56
HDAC9-220ENST00000461409 SETDB2Q96T68 719 aa11.54□□□□□ -0.56
HDAC9-220ENST00000461409 TBC1D2BQ9UPU7 963 aa11.54□□□□□ -0.56
HDAC9-220ENST00000461409 SCN7AQ01118 1682 aa11.53□□□□□ -0.56
HDAC9-220ENST00000461409 NPHP1O15259 732 aa11.53□□□□□ -0.56
HDAC9-220ENST00000461409 KCNQ3O43525 872 aa11.53□□□□□ -0.56
HDAC9-220ENST00000461409 PDE6BP35913 854 aa11.53□□□□□ -0.56
HDAC9-220ENST00000461409 C16orf71Q8IYS4 520 aaPredicted RBP11.53□□□□□ -0.56
HDAC9-220ENST00000461409 ZNF687Q8N1G0 1237 aa11.53□□□□□ -0.56
HDAC9-220ENST00000461409 BRIP1Q9BX63 1249 aa11.53□□□□□ -0.56
HDAC9-220ENST00000461409 AFDNP55196 1824 aaKnown RBP11.53□□□□□ -0.56
HDAC9-220ENST00000461409 CAMTA2O94983 1202 aa11.52□□□□□ -0.57
HDAC9-220ENST00000461409 LMNB1P20700 586 aa11.52□□□□□ -0.57
HDAC9-220ENST00000461409 PDE4AP27815 886 aa11.52□□□□□ -0.57
HDAC9-220ENST00000461409 DZIP3Q86Y13 1208 aaKnown RBP11.52□□□□□ -0.57
HDAC9-220ENST00000461409 CNBD1Q8NA66 436 aa11.52□□□□□ -0.57
HDAC9-220ENST00000461409 PTCD2Q8WV60 388 aaKnown RBP11.52□□□□□ -0.57
HDAC9-220ENST00000461409 NMRK2Q9NPI5 230 aa11.52□□□□□ -0.57
HDAC9-220ENST00000461409 ZNF652Q9Y2D9 606 aa11.52□□□□□ -0.57
HDAC9-220ENST00000461409 USP16Q9Y5T5 823 aa11.52□□□□□ -0.57
HDAC9-220ENST00000461409 APLP1P51693 650 aa11.51□□□□□ -0.57
HDAC9-220ENST00000461409 ST5P78524 1137 aa11.51□□□□□ -0.57
HDAC9-220ENST00000461409 TAF7Q15545 349 aaPredicted RBP11.51□□□□□ -0.57
HDAC9-220ENST00000461409 PPP1R15BQ5SWA1 713 aa11.51□□□□□ -0.57
HDAC9-220ENST00000461409 PRR5LQ6MZQ0 368 aa11.51□□□□□ -0.57
HDAC9-220ENST00000461409 CLEC4GQ6UXB4 293 aa11.51□□□□□ -0.57
HDAC9-220ENST00000461409 PNISRQ8TF01 805 aaKnown RBP11.51□□□□□ -0.57
HDAC9-220ENST00000461409 PNNQ9H307 717 aaKnown RBP11.51□□□□□ -0.57
HDAC9-220ENST00000461409 DLEC1Q9Y238 1755 aa11.51□□□□□ -0.57
HDAC9-220ENST00000461409 NUDT7P0C024 238 aa11.5□□□□□ -0.57
HDAC9-220ENST00000461409 RASSF7Q02833 373 aa11.5□□□□□ -0.57
HDAC9-220ENST00000461409 DCTN1Q14203 1278 aa11.5□□□□□ -0.57
HDAC9-220ENST00000461409 RBM46Q8TBY0 533 aaKnown RBP11.5□□□□□ -0.57
HDAC9-220ENST00000461409 ZNF622Q969S3 477 aaKnown RBP eCLIP11.5□□□□□ -0.57
HDAC9-220ENST00000461409 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.5□□□□□ -0.57
HDAC9-220ENST00000461409 ZNF316A6NFI3 1004 aaPredicted RBP11.49□□□□□ -0.57
HDAC9-220ENST00000461409 FSTL1Q12841 308 aa11.49□□□□□ -0.57
HDAC9-220ENST00000461409 MFSD10Q14728 455 aa11.49□□□□□ -0.57
HDAC9-220ENST00000461409 NBPF5PQ86XG9 351 aaPredicted RBP11.49□□□□□ -0.57
HDAC9-220ENST00000461409 SPRYD3Q8NCJ5 442 aa11.49□□□□□ -0.57
HDAC9-220ENST00000461409 CNKSR1Q969H4 720 aa11.49□□□□□ -0.57
HDAC9-220ENST00000461409 MAPK8IP3Q9UPT6 1336 aa11.49□□□□□ -0.57
HDAC9-220ENST00000461409 PRAMEF22A3QJZ6 481 aa11.48□□□□□ -0.57
HDAC9-220ENST00000461409 NFE2L2Q16236 605 aa11.48□□□□□ -0.57
HDAC9-220ENST00000461409 SOGA3Q5TF21 947 aa11.48□□□□□ -0.57
HDAC9-220ENST00000461409 STYK1Q6J9G0 422 aa11.48□□□□□ -0.57
HDAC9-220ENST00000461409 BCORQ6W2J9 1755 aa11.47□□□□□ -0.57
HDAC9-220ENST00000461409 GLTPD2A6NH11 291 aa11.47□□□□□ -0.57
HDAC9-220ENST00000461409 NFKBIEO00221 500 aa11.47□□□□□ -0.57
HDAC9-220ENST00000461409 PIP4K2AP48426 406 aaPredicted RBP11.47□□□□□ -0.57
HDAC9-220ENST00000461409 MASTLQ96GX5 879 aa11.47□□□□□ -0.57
HDAC9-220ENST00000461409 PLEKHF1Q96S99 279 aa11.47□□□□□ -0.57
HDAC9-220ENST00000461409 TNRC6CQ9HCJ0 1690 aaKnown RBP11.46□□□□□ -0.57
HDAC9-220ENST00000461409 LTBP3Q9NS15 1303 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 NBPF26B4DH59 902 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 C21orf2O43822 256 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 SRGNP10124 158 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 VEGFAP15692 232 aaPredicted RBP11.46□□□□□ -0.57
HDAC9-220ENST00000461409 RALBP1Q15311 655 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 PRPF40BQ6NWY9 871 aaKnown RBP11.46□□□□□ -0.57
HDAC9-220ENST00000461409 NBPF10Q6P3W6 841 aaKnown RBP11.46□□□□□ -0.57
HDAC9-220ENST00000461409 TPTE2Q6XPS3 522 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 CCDC24Q8N4L8 307 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 NBPF15Q8N660 670 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms