RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 NBPF7P0C2Y1 421 aaPredicted RBP12.97□□□□□ -0.33
USP39-210ENST00000459775 GPTP24298 496 aa12.97□□□□□ -0.33
USP39-210ENST00000459775 IL6STP40189 918 aaPredicted RBP12.97□□□□□ -0.33
USP39-210ENST00000459775 CCT4P50991 539 aaKnown RBP12.97□□□□□ -0.33
USP39-210ENST00000459775 METTL22Q9BUU2 404 aaPredicted RBP12.97□□□□□ -0.33
USP39-210ENST00000459775 USP44Q9H0E7 712 aa12.97□□□□□ -0.33
USP39-210ENST00000459775 IGHDP01880 384 aa12.97□□□□□ -0.33
USP39-210ENST00000459775 SKAP1Q86WV1 359 aa12.97□□□□□ -0.33
USP39-210ENST00000459775 SRP68Q9UHB9 627 aaKnown RBP12.97□□□□□ -0.33
USP39-210ENST00000459775 NEURL1BA8MQ27 555 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 LY75O60449 1722 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 ZNF827Q17R98 1081 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 KIF6Q6ZMV9 814 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 ZMYND15Q9H091 742 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 MAP3K15Q6ZN16 1313 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 CNTNAP4Q9C0A0 1308 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 SLC27A3Q5K4L6 730 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 SYNE4Q8N205 404 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 BRPF3Q9ULD4 1205 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 COL15A1P39059 1388 aa12.95□□□□□ -0.34
USP39-210ENST00000459775 FAM177BA6PVY3 158 aa12.94□□□□□ -0.34
USP39-210ENST00000459775 GRIN3BO60391 1043 aa12.94□□□□□ -0.34
USP39-210ENST00000459775 CAMTA2O94983 1202 aa12.94□□□□□ -0.34
USP39-210ENST00000459775 HMGB2P26583 209 aaKnown RBP12.94□□□□□ -0.34
USP39-210ENST00000459775 SIRT2Q8IXJ6 389 aa12.94□□□□□ -0.34
USP39-210ENST00000459775 LINS1Q8NG48 757 aa12.94□□□□□ -0.34
USP39-210ENST00000459775 ZNF592Q92610 1267 aa12.94□□□□□ -0.34
USP39-210ENST00000459775 ARHGEF1Q92888 912 aaKnown RBP12.94□□□□□ -0.34
USP39-210ENST00000459775 AK7Q96M32 723 aa12.94□□□□□ -0.34
USP39-210ENST00000459775 COL5A3P25940 1745 aaPredicted RBP12.94□□□□□ -0.34
USP39-210ENST00000459775 RPS6KA4O75676 772 aa12.94□□□□□ -0.34
USP39-210ENST00000459775 DEKP35659 375 aaKnown RBP12.94□□□□□ -0.34
USP39-210ENST00000459775 RC3H1Q5TC82 1133 aaKnown RBP12.94□□□□□ -0.34
USP39-210ENST00000459775 RTCBQ9Y3I0 505 aaKnown RBP12.94□□□□□ -0.34
USP39-210ENST00000459775 LRRFIP2Q9Y608 721 aaKnown RBP12.94□□□□□ -0.34
USP39-210ENST00000459775 NEXNQ0ZGT2 675 aa12.93□□□□□ -0.34
USP39-210ENST00000459775 TCIRG1Q13488 830 aa12.93□□□□□ -0.34
USP39-210ENST00000459775 GCKRQ14397 625 aa12.93□□□□□ -0.34
USP39-210ENST00000459775 BICDL1Q6ZP65 573 aa12.93□□□□□ -0.34
USP39-210ENST00000459775 C9orf78Q9NZ63 289 aaPredicted RBP12.93□□□□□ -0.34
USP39-210ENST00000459775 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.92□□□□□ -0.34
USP39-210ENST00000459775 NCLP19338 710 aaKnown RBP12.92□□□□□ -0.34
USP39-210ENST00000459775 USPL1Q5W0Q7 1092 aa12.92□□□□□ -0.34
USP39-210ENST00000459775 GIGYF2Q6Y7W6 1299 aaKnown RBP12.92□□□□□ -0.34
USP39-210ENST00000459775 CACNA1FO60840 1977 aa12.92□□□□□ -0.34
USP39-210ENST00000459775 C4BP0C0L5 1744 aa12.92□□□□□ -0.34
USP39-210ENST00000459775 UBE3BQ7Z3V4 1068 aa12.92□□□□□ -0.34
USP39-210ENST00000459775 BCL2L12Q9HB09 334 aa12.92□□□□□ -0.34
USP39-210ENST00000459775 ATP10DQ9P241 1426 aa12.92□□□□□ -0.34
USP39-210ENST00000459775 UBN2Q6ZU65 1347 aa12.92□□□□□ -0.34
USP39-210ENST00000459775 ARFGEF2Q9Y6D5 1785 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 A0A087WZG4 1122 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 GRM8O00222 908 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 ALDH1L1O75891 902 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 UBTFL1P0CB47 393 aaPredicted RBP12.91□□□□□ -0.34
USP39-210ENST00000459775 KAZALD1Q96I82 304 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 CHRM1P11229 460 aaPredicted RBP12.91□□□□□ -0.34
USP39-210ENST00000459775 EPHA10Q5JZY3 1008 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 TRAPPC3LQ5T215 181 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 FAM89AQ96GI7 184 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 SUCLG2Q96I99 432 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 ISCA1Q9BUE6 129 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 TFCP2L1Q9NZI6 479 aa12.91□□□□□ -0.34
USP39-210ENST00000459775 PXDNLA1KZ92 1463 aa12.9□□□□□ -0.34
USP39-210ENST00000459775 CICQ96RK0 1608 aaPredicted RBP12.9□□□□□ -0.34
USP39-210ENST00000459775 TAF1LQ8IZX4 1826 aa12.9□□□□□ -0.34
USP39-210ENST00000459775 ZNF831Q5JPB2 1677 aa12.9□□□□□ -0.34
USP39-210ENST00000459775 AKT1S1Q96B36 256 aa12.9□□□□□ -0.34
USP39-210ENST00000459775 PNMA6EA0A0J9YXQ4 647 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 ERVV-1B6SEH8 477 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 GNAI2P04899 355 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 CEP85Q6P2H3 762 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 NLRP10Q86W26 655 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 CCDC24Q8N4L8 307 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 ZFP91Q96JP5 570 aaPredicted RBP12.89□□□□□ -0.35
USP39-210ENST00000459775 CWC25Q9NXE8 425 aaPredicted RBP12.89□□□□□ -0.35
USP39-210ENST00000459775 GNAI3P08754 354 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 RFC4P35249 363 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 TBC1D9BQ66K14 1250 aa12.89□□□□□ -0.35
USP39-210ENST00000459775 NIP7Q9Y221 180 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP39-210ENST00000459775 MSH5O43196 834 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 CASP7P55210 303 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 SUSD4Q5VX71 490 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 ZNF34Q8IZ26 560 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 NARFQ9UHQ1 456 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 KDM2BQ8NHM5 1336 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 ZPR1O75312 459 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 COL23A1Q86Y22 540 aaPredicted RBP12.88□□□□□ -0.35
USP39-210ENST00000459775 NUTM1Q86Y26 1132 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 CCDC85AQ96PX6 553 aaPredicted RBP12.88□□□□□ -0.35
USP39-210ENST00000459775 PSMD1Q99460 953 aa12.88□□□□□ -0.35
USP39-210ENST00000459775 BICC1Q9H694 974 aaKnown RBP12.88□□□□□ -0.35
USP39-210ENST00000459775 H7C1W4 665 aa12.87□□□□□ -0.35
USP39-210ENST00000459775 TEX2Q8IWB9 1127 aa12.87□□□□□ -0.35
USP39-210ENST00000459775 CCDC191Q8NCU4 936 aa12.87□□□□□ -0.35
USP39-210ENST00000459775 APBB1O00213 710 aa12.86□□□□□ -0.35
USP39-210ENST00000459775 PPP1R42Q7Z4L9 355 aa12.86□□□□□ -0.35
USP39-210ENST00000459775 ANKRD44Q8N8A2 993 aa12.86□□□□□ -0.35
USP39-210ENST00000459775 TRMT112Q9UI30 125 aaKnown RBP12.86□□□□□ -0.35
USP39-210ENST00000459775 PNPLA7Q6ZV29 1317 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms