RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 NTSR2O95665 410 aa22.38■■□□□ 1.17
USP39-208ENST00000455732 GTF2E1P29083 439 aaPredicted RBP22.38■■□□□ 1.17
USP39-208ENST00000455732 AIMP1Q12904 312 aaKnown RBP22.38■■□□□ 1.17
USP39-208ENST00000455732 ERFEQ4G0M1 354 aa22.38■■□□□ 1.17
USP39-208ENST00000455732 PARP10Q53GL7 1025 aa22.38■■□□□ 1.17
USP39-208ENST00000455732 CCDC30Q5VVM6 783 aa22.38■■□□□ 1.17
USP39-208ENST00000455732 TIAM2Q8IVF5 1701 aa22.37■■□□□ 1.17
USP39-208ENST00000455732 CRY2Q49AN0 593 aa22.37■■□□□ 1.17
USP39-208ENST00000455732 PLBD2Q8NHP8 589 aa22.37■■□□□ 1.17
USP39-208ENST00000455732 LMNB1P20700 586 aa22.36■■□□□ 1.17
USP39-208ENST00000455732 TWISTNBQ3B726 338 aaPredicted RBP22.36■■□□□ 1.17
USP39-208ENST00000455732 C7orf43Q8WVR3 580 aa22.36■■□□□ 1.17
USP39-208ENST00000455732 ZNF219Q9P2Y4 722 aaPredicted RBP22.36■■□□□ 1.17
USP39-208ENST00000455732 LAMB2P55268 1798 aa22.35■■□□□ 1.17
USP39-208ENST00000455732 ANKRD13DQ6ZTN6 518 aa22.35■■□□□ 1.17
USP39-208ENST00000455732 PPP1R42Q7Z4L9 355 aa22.35■■□□□ 1.17
USP39-208ENST00000455732 MYH16Q9H6N6 1097 aa22.35■■□□□ 1.17
USP39-208ENST00000455732 SPINK5Q9NQ38 1064 aaPredicted RBP22.35■■□□□ 1.17
USP39-208ENST00000455732 KIF3CO14782 793 aa22.34■■□□□ 1.17
USP39-208ENST00000455732 GOLGA2Q08379 1002 aa22.34■■□□□ 1.17
USP39-208ENST00000455732 TCIRG1Q13488 830 aa22.34■■□□□ 1.17
USP39-208ENST00000455732 RNF123Q5XPI4 1314 aa22.33■■□□□ 1.17
USP39-208ENST00000455732 LTBP3Q9NS15 1303 aa22.33■■□□□ 1.17
USP39-208ENST00000455732 ZC3H4Q9UPT8 1303 aaKnown RBP22.33■■□□□ 1.17
USP39-208ENST00000455732 HSPA6P17066 643 aa22.33■■□□□ 1.17
USP39-208ENST00000455732 SOGA3Q5TF21 947 aa22.32■■□□□ 1.16
USP39-208ENST00000455732 NLRP10Q86W26 655 aa22.32■■□□□ 1.16
USP39-208ENST00000455732 UTP14AQ9BVJ6 771 aaKnown RBP22.32■■□□□ 1.16
USP39-208ENST00000455732 ALDH1B1P30837 517 aa22.31■■□□□ 1.16
USP39-208ENST00000455732 SLC10A5Q5PT55 438 aa22.31■■□□□ 1.16
USP39-208ENST00000455732 STK31Q9BXU1 1019 aa22.31■■□□□ 1.16
USP39-208ENST00000455732 PHAXQ9H814 394 aaKnown RBP22.31■■□□□ 1.16
USP39-208ENST00000455732 HOXA10P31260 410 aaPredicted RBP22.3■■□□□ 1.16
USP39-208ENST00000455732 EXOSC9Q06265 439 aaKnown RBP22.3■■□□□ 1.16
USP39-208ENST00000455732 MIER1Q8N108 512 aa22.3■■□□□ 1.16
USP39-208ENST00000455732 ISCA1Q9BUE6 129 aa22.3■■□□□ 1.16
USP39-208ENST00000455732 TAOK3Q9H2K8 898 aa22.3■■□□□ 1.16
USP39-208ENST00000455732 NMRK2Q9NPI5 230 aa22.3■■□□□ 1.16
USP39-208ENST00000455732 DDX60Q8IY21 1712 aaKnown RBP22.29■■□□□ 1.16
USP39-208ENST00000455732 CACNA1FO60840 1977 aa22.29■■□□□ 1.16
USP39-208ENST00000455732 C3orf67Q6ZVT6 689 aa22.29■■□□□ 1.16
USP39-208ENST00000455732 VAMP4O75379 141 aa22.28■■□□□ 1.16
USP39-208ENST00000455732 TRIM28Q13263 835 aaKnown RBP22.28■■□□□ 1.16
USP39-208ENST00000455732 CCDC93Q567U6 631 aa22.28■■□□□ 1.16
USP39-208ENST00000455732 SNED1Q8TER0 1413 aa22.28■■□□□ 1.16
USP39-208ENST00000455732 DDX58O95786 925 aaKnown RBP22.27■■□□□ 1.16
USP39-208ENST00000455732 OLFM4Q6UX06 510 aa22.27■■□□□ 1.16
USP39-208ENST00000455732 RPGRQ92834 1020 aaKnown RBP22.27■■□□□ 1.16
USP39-208ENST00000455732 NLRP3Q96P20 1036 aa22.27■■□□□ 1.16
USP39-208ENST00000455732 KDM2BQ8NHM5 1336 aa22.27■■□□□ 1.16
USP39-208ENST00000455732 TAF1P21675 1872 aa22.26■■□□□ 1.15
USP39-208ENST00000455732 E9PSI1 815 aa22.26■■□□□ 1.15
USP39-208ENST00000455732 RIC3Q7Z5B4 369 aa22.26■■□□□ 1.15
USP39-208ENST00000455732 SYNE4Q8N205 404 aa22.26■■□□□ 1.15
USP39-208ENST00000455732 CRAMP1Q96RY5 1269 aa22.26■■□□□ 1.15
USP39-208ENST00000455732 TRMT112Q9UI30 125 aaKnown RBP22.25■■□□□ 1.15
USP39-208ENST00000455732 SH3TC1Q8TE82 1336 aa22.25■■□□□ 1.15
USP39-208ENST00000455732 GLTPD2A6NH11 291 aa22.24■■□□□ 1.15
USP39-208ENST00000455732 TOMM70O94826 608 aa22.24■■□□□ 1.15
USP39-208ENST00000455732 SLC4A2P04920 1241 aa22.24■■□□□ 1.15
USP39-208ENST00000455732 RBM17Q96I25 401 aaKnown RBP22.24■■□□□ 1.15
USP39-208ENST00000455732 ATP5J2-PTCD1G3V325 749 aa22.23■■□□□ 1.15
USP39-208ENST00000455732 TCERG1O14776 1098 aaKnown RBP22.23■■□□□ 1.15
USP39-208ENST00000455732 HCLS1P14317 486 aaPredicted RBP22.23■■□□□ 1.15
USP39-208ENST00000455732 FKBP4Q02790 459 aaKnown RBP eCLIP22.23■■□□□ 1.15
USP39-208ENST00000455732 RTKN2Q8IZC4 609 aa22.23■■□□□ 1.15
USP39-208ENST00000455732 SLFN5Q08AF3 891 aa22.22■■□□□ 1.15
USP39-208ENST00000455732 KSR2Q6VAB6 950 aa22.22■■□□□ 1.15
USP39-208ENST00000455732 METTL22Q9BUU2 404 aaPredicted RBP22.22■■□□□ 1.15
USP39-208ENST00000455732 WDR90Q96KV7 1748 aa22.22■■□□□ 1.15
USP39-208ENST00000455732 FLIIQ13045 1269 aa22.21■■□□□ 1.15
USP39-208ENST00000455732 CC2D2BQ6DHV5 1058 aa22.21■■□□□ 1.15
USP39-208ENST00000455732 G2E3Q7L622 706 aa22.21■■□□□ 1.15
USP39-208ENST00000455732 ZNF428Q96B54 188 aa22.21■■□□□ 1.15
USP39-208ENST00000455732 RRAGCQ9HB90 399 aa22.21■■□□□ 1.15
USP39-208ENST00000455732 PI4KAP2A4QPH2 592 aa22.2■■□□□ 1.14
USP39-208ENST00000455732 C16orf71Q8IYS4 520 aaPredicted RBP22.2■■□□□ 1.14
USP39-208ENST00000455732 PI4KAP1Q8N8J0 262 aa22.2■■□□□ 1.14
USP39-208ENST00000455732 CCDC191Q8NCU4 936 aa22.2■■□□□ 1.14
USP39-208ENST00000455732 MYD88Q99836 296 aa22.2■■□□□ 1.14
USP39-208ENST00000455732 MAP3K2Q9Y2U5 619 aa22.2■■□□□ 1.14
USP39-208ENST00000455732 APLP1P51693 650 aa22.19■■□□□ 1.14
USP39-208ENST00000455732 SLC51AQ86UW1 340 aa22.19■■□□□ 1.14
USP39-208ENST00000455732 FAM89AQ96GI7 184 aa22.19■■□□□ 1.14
USP39-208ENST00000455732 PSMD1Q99460 953 aa22.19■■□□□ 1.14
USP39-208ENST00000455732 ZNF277Q9NRM2 450 aaPredicted RBP22.19■■□□□ 1.14
USP39-208ENST00000455732 ABCC4O15439 1325 aa22.19■■□□□ 1.14
USP39-208ENST00000455732 PPEF1O14829 653 aaPredicted RBP22.18■■□□□ 1.14
USP39-208ENST00000455732 DPY19L2Q6NUT2 758 aa22.18■■□□□ 1.14
USP39-208ENST00000455732 TRMT2AQ8IZ69 625 aaKnown RBP22.18■■□□□ 1.14
USP39-208ENST00000455732 GRIPAP1Q4V328 841 aa22.17■■□□□ 1.14
USP39-208ENST00000455732 ZBTB38Q8NAP3 1195 aaPredicted RBP22.17■■□□□ 1.14
USP39-208ENST00000455732 CWC25Q9NXE8 425 aaPredicted RBP22.17■■□□□ 1.14
USP39-208ENST00000455732 POTECB2RU33 542 aa22.16■■□□□ 1.14
USP39-208ENST00000455732 IGKV5-2P06315 115 aa22.16■■□□□ 1.14
USP39-208ENST00000455732 FKBP5Q13451 457 aaPredicted RBP22.16■■□□□ 1.14
USP39-208ENST00000455732 RBM46Q8TBY0 533 aaKnown RBP22.16■■□□□ 1.14
USP39-208ENST00000455732 CDCA7LQ96GN5 454 aa22.16■■□□□ 1.14
USP39-208ENST00000455732 ATP6V0A2Q9Y487 856 aa22.16■■□□□ 1.14
USP39-208ENST00000455732 LRRC37AA6NMS7 1700 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms