RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 CHPF2Q9P2E5 772 aa16.76■□□□□ 0.27
CHD3-206ENST00000452447 NTSR2O95665 410 aa16.75■□□□□ 0.27
CHD3-206ENST00000452447 APLP1P51693 650 aa16.75■□□□□ 0.27
CHD3-206ENST00000452447 FSTL1Q12841 308 aa16.75■□□□□ 0.27
CHD3-206ENST00000452447 MBIPQ9NS73 344 aa16.75■□□□□ 0.27
CHD3-206ENST00000452447 GNAI1P63096 354 aa16.74■□□□□ 0.27
CHD3-206ENST00000452447 FKBP4Q02790 459 aaKnown RBP eCLIP16.74■□□□□ 0.27
CHD3-206ENST00000452447 NLRP3Q96P20 1036 aa16.74■□□□□ 0.27
CHD3-206ENST00000452447 IFT57Q9NWB7 429 aa16.74■□□□□ 0.27
CHD3-206ENST00000452447 DBF4Q9UBU7 674 aaPredicted RBP16.74■□□□□ 0.27
CHD3-206ENST00000452447 RIC1Q4ADV7 1423 aa16.74■□□□□ 0.27
CHD3-206ENST00000452447 ANKRD36CQ5JPF3 1778 aa16.74■□□□□ 0.27
CHD3-206ENST00000452447 ZNF316A6NFI3 1004 aaPredicted RBP16.73■□□□□ 0.27
CHD3-206ENST00000452447 HOXA10P31260 410 aaPredicted RBP16.73■□□□□ 0.27
CHD3-206ENST00000452447 DUSP27Q5VZP5 1158 aa16.73■□□□□ 0.27
CHD3-206ENST00000452447 OLFM4Q6UX06 510 aa16.73■□□□□ 0.27
CHD3-206ENST00000452447 SMC1BQ8NDV3 1235 aa16.73■□□□□ 0.27
CHD3-206ENST00000452447 RBM17Q96I25 401 aaKnown RBP16.73■□□□□ 0.27
CHD3-206ENST00000452447 TCIRG1Q13488 830 aa16.72■□□□□ 0.27
CHD3-206ENST00000452447 CC2D2BQ6DHV5 1058 aa16.72■□□□□ 0.27
CHD3-206ENST00000452447 ZNF277Q9NRM2 450 aaPredicted RBP16.72■□□□□ 0.27
CHD3-206ENST00000452447 RNF123Q5XPI4 1314 aa16.72■□□□□ 0.27
CHD3-206ENST00000452447 ZNF853P0CG23 659 aa16.72■□□□□ 0.27
CHD3-206ENST00000452447 NLRP10Q86W26 655 aa16.72■□□□□ 0.27
CHD3-206ENST00000452447 CRAMP1Q96RY5 1269 aa16.72■□□□□ 0.27
CHD3-206ENST00000452447 HYPKQ9NX55 129 aa16.72■□□□□ 0.27
CHD3-206ENST00000452447 ANP32CO43423 234 aa16.71■□□□□ 0.27
CHD3-206ENST00000452447 SLC10A5Q5PT55 438 aa16.71■□□□□ 0.27
CHD3-206ENST00000452447 ANKRD13DQ6ZTN6 518 aa16.71■□□□□ 0.27
CHD3-206ENST00000452447 SYNE4Q8N205 404 aa16.71■□□□□ 0.27
CHD3-206ENST00000452447 PLBD2Q8NHP8 589 aa16.71■□□□□ 0.27
CHD3-206ENST00000452447 TMX4Q9H1E5 349 aaPredicted RBP16.71■□□□□ 0.27
CHD3-206ENST00000452447 TRMT112Q9UI30 125 aaKnown RBP16.71■□□□□ 0.27
CHD3-206ENST00000452447 WDR90Q96KV7 1748 aa16.71■□□□□ 0.26
CHD3-206ENST00000452447 DDNO94850 711 aaPredicted RBP16.7■□□□□ 0.26
CHD3-206ENST00000452447 GRIPAP1Q4V328 841 aa16.7■□□□□ 0.26
CHD3-206ENST00000452447 CCDC184Q52MB2 194 aa16.7■□□□□ 0.26
CHD3-206ENST00000452447 ELL2O00472 640 aaPredicted RBP16.69■□□□□ 0.26
CHD3-206ENST00000452447 TCERG1O14776 1098 aaKnown RBP16.69■□□□□ 0.26
CHD3-206ENST00000452447 IARSP41252 1262 aaKnown RBP16.69■□□□□ 0.26
CHD3-206ENST00000452447 C3orf67Q6ZVT6 689 aa16.69■□□□□ 0.26
CHD3-206ENST00000452447 PSMD1Q99460 953 aa16.69■□□□□ 0.26
CHD3-206ENST00000452447 SH3TC1Q8TE82 1336 aa16.69■□□□□ 0.26
CHD3-206ENST00000452447 POTECB2RU33 542 aa16.68■□□□□ 0.26
CHD3-206ENST00000452447 PPEF1O14829 653 aaPredicted RBP16.68■□□□□ 0.26
CHD3-206ENST00000452447 JDP2Q8WYK2 163 aa16.68■□□□□ 0.26
CHD3-206ENST00000452447 MRS2Q9HD23 443 aa16.68■□□□□ 0.26
CHD3-206ENST00000452447 CHMP4AQ9BY43 222 aa16.68■□□□□ 0.26
CHD3-206ENST00000452447 HCLS1P14317 486 aaPredicted RBP16.67■□□□□ 0.26
CHD3-206ENST00000452447 IQCA1LA6NCM1 817 aa16.66■□□□□ 0.26
CHD3-206ENST00000452447 GOLGA2Q08379 1002 aa16.66■□□□□ 0.26
CHD3-206ENST00000452447 ZNF428Q96B54 188 aa16.66■□□□□ 0.26
CHD3-206ENST00000452447 ATP5J2-PTCD1G3V325 749 aa16.65■□□□□ 0.26
CHD3-206ENST00000452447 DDX46Q7L014 1031 aaKnown RBP16.65■□□□□ 0.26
CHD3-206ENST00000452447 RIC3Q7Z5B4 369 aa16.65■□□□□ 0.26
CHD3-206ENST00000452447 C8orf58Q8NAV2 365 aa16.65■□□□□ 0.26
CHD3-206ENST00000452447 SCN4AP35499 1836 aa16.65■□□□□ 0.26
CHD3-206ENST00000452447 LAMB2P55268 1798 aa16.65■□□□□ 0.26
CHD3-206ENST00000452447 PCNTO95613 3336 aa16.65■□□□□ 0.26
CHD3-206ENST00000452447 ABCC4O15439 1325 aa16.65■□□□□ 0.26
CHD3-206ENST00000452447 SNED1Q8TER0 1413 aa16.64■□□□□ 0.26
CHD3-206ENST00000452447 BBOX1O75936 387 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 CCDC27Q2M243 656 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 CCDC30Q5VVM6 783 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 L3MBTL3Q96JM7 780 aaPredicted RBP16.64■□□□□ 0.25
CHD3-206ENST00000452447 ISCA1Q9BUE6 129 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 ATP6V0A2Q9Y487 856 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 ZNF541Q9H0D2 1346 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 FZD9O00144 591 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 HTRA3P83110 453 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 WWC1Q8IX03 1113 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 LARGE2Q8N3Y3 721 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 DNAJC5GQ8N7S2 189 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 FAM89AQ96GI7 184 aa16.64■□□□□ 0.25
CHD3-206ENST00000452447 PHAXQ9H814 394 aaKnown RBP16.64■□□□□ 0.25
CHD3-206ENST00000452447 EIF6P56537 245 aaKnown RBP16.63■□□□□ 0.25
CHD3-206ENST00000452447 DDX58O95786 925 aaKnown RBP16.62■□□□□ 0.25
CHD3-206ENST00000452447 TRIM28Q13263 835 aaKnown RBP16.62■□□□□ 0.25
CHD3-206ENST00000452447 RTL5Q5HYW3 569 aaPredicted RBP16.62■□□□□ 0.25
CHD3-206ENST00000452447 CHADLQ6NUI6 762 aa16.62■□□□□ 0.25
CHD3-206ENST00000452447 GPC2Q8N158 579 aa16.62■□□□□ 0.25
CHD3-206ENST00000452447 TSR2Q969E8 191 aaKnown RBP16.62■□□□□ 0.25
CHD3-206ENST00000452447 TAF1P21675 1872 aa16.61■□□□□ 0.25
CHD3-206ENST00000452447 GRAPQ13588 217 aa16.61■□□□□ 0.25
CHD3-206ENST00000452447 SLC51AQ86UW1 340 aa16.61■□□□□ 0.25
CHD3-206ENST00000452447 SP8Q8IXZ3 490 aa16.61■□□□□ 0.25
CHD3-206ENST00000452447 SUPT20HQ8NEM7 779 aa16.61■□□□□ 0.25
CHD3-206ENST00000452447 GRAPLQ8TC17 118 aaPredicted RBP16.61■□□□□ 0.25
CHD3-206ENST00000452447 TAF1DQ9H5J8 278 aaPredicted RBP16.61■□□□□ 0.25
CHD3-206ENST00000452447 HACL1Q9UJ83 578 aa16.61■□□□□ 0.25
CHD3-206ENST00000452447 PPIP5K2O43314 1243 aa16.6■□□□□ 0.25
CHD3-206ENST00000452447 DPP8Q6V1X1 898 aaPredicted RBP16.6■□□□□ 0.25
CHD3-206ENST00000452447 NIM1KQ8IY84 436 aa16.6■□□□□ 0.25
CHD3-206ENST00000452447 MPNDQ8N594 471 aa16.6■□□□□ 0.25
CHD3-206ENST00000452447 TSPYL6Q8N831 410 aa16.6■□□□□ 0.25
CHD3-206ENST00000452447 VPS33BQ9H267 617 aa16.6■□□□□ 0.25
CHD3-206ENST00000452447 GJA3Q9Y6H8 435 aa16.6■□□□□ 0.25
CHD3-206ENST00000452447 DDX60Q8IY21 1712 aaKnown RBP16.6■□□□□ 0.25
CHD3-206ENST00000452447 POTEIP0CG38 1075 aa16.6■□□□□ 0.25
CHD3-206ENST00000452447 POTEJP0CG39 1038 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms