RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SETDB2Q96T68 719 aa14.68□□□□□ -0.06
SCN9A-204ENST00000452182 NIP7Q9Y221 180 aaKnown RBP eCLIP14.68□□□□□ -0.06
SCN9A-204ENST00000452182 CARMIL3Q8ND23 1372 aa14.67□□□□□ -0.06
SCN9A-204ENST00000452182 ALDH1L1O75891 902 aa14.67□□□□□ -0.06
SCN9A-204ENST00000452182 CCT4P50991 539 aaKnown RBP14.67□□□□□ -0.06
SCN9A-204ENST00000452182 INTS3Q68E01 1043 aaKnown RBP14.67□□□□□ -0.06
SCN9A-204ENST00000452182 SLC4A10Q6U841 1118 aa14.67□□□□□ -0.06
SCN9A-204ENST00000452182 DZIP1LQ8IYY4 767 aaKnown RBP14.67□□□□□ -0.06
SCN9A-204ENST00000452182 CCDC191Q8NCU4 936 aa14.67□□□□□ -0.06
SCN9A-204ENST00000452182 UBN2Q6ZU65 1347 aa14.67□□□□□ -0.06
SCN9A-204ENST00000452182 NRXN2Q9P2S2 1712 aa14.67□□□□□ -0.06
SCN9A-204ENST00000452182 NEURL1BA8MQ27 555 aa14.66□□□□□ -0.06
SCN9A-204ENST00000452182 PLIN1O60240 522 aa14.66□□□□□ -0.06
SCN9A-204ENST00000452182 NLRP10Q86W26 655 aa14.66□□□□□ -0.06
SCN9A-204ENST00000452182 SRCIN1Q9C0H9 1055 aa14.66□□□□□ -0.06
SCN9A-204ENST00000452182 ATP5J2-PTCD1G3V325 749 aa14.66□□□□□ -0.06
SCN9A-204ENST00000452182 ABCB7O75027 752 aa14.66□□□□□ -0.06
SCN9A-204ENST00000452182 FTSJ3Q8IY81 847 aaKnown RBP14.66□□□□□ -0.06
SCN9A-204ENST00000452182 CWC25Q9NXE8 425 aaPredicted RBP14.66□□□□□ -0.06
SCN9A-204ENST00000452182 SUPT16HQ9Y5B9 1047 aaKnown RBP14.66□□□□□ -0.06
SCN9A-204ENST00000452182 POLRMTO00411 1230 aaKnown RBP14.65□□□□□ -0.06
SCN9A-204ENST00000452182 ZBTB7AO95365 584 aa14.65□□□□□ -0.06
SCN9A-204ENST00000452182 MMP10P09238 476 aa14.65□□□□□ -0.06
SCN9A-204ENST00000452182 GPTP24298 496 aa14.65□□□□□ -0.06
SCN9A-204ENST00000452182 CWF19L2Q2TBE0 894 aaKnown RBP14.65□□□□□ -0.06
SCN9A-204ENST00000452182 MSL1Q68DK7 614 aa14.65□□□□□ -0.06
SCN9A-204ENST00000452182 PPP1R42Q7Z4L9 355 aa14.65□□□□□ -0.06
SCN9A-204ENST00000452182 CLUAP1Q96AJ1 413 aa14.65□□□□□ -0.06
SCN9A-204ENST00000452182 TNNQ9UQP3 1299 aa14.65□□□□□ -0.06
SCN9A-204ENST00000452182 RLBP1P12271 317 aa14.64□□□□□ -0.07
SCN9A-204ENST00000452182 DDR1Q08345 913 aa14.64□□□□□ -0.07
SCN9A-204ENST00000452182 GCKRQ14397 625 aa14.64□□□□□ -0.07
SCN9A-204ENST00000452182 BICDL1Q6ZP65 573 aa14.64□□□□□ -0.07
SCN9A-204ENST00000452182 NYXQ9GZU5 481 aa14.64□□□□□ -0.07
SCN9A-204ENST00000452182 SUSD4Q5VX71 490 aa14.63□□□□□ -0.07
SCN9A-204ENST00000452182 TPTE2Q6XPS3 522 aa14.63□□□□□ -0.07
SCN9A-204ENST00000452182 SGIP1Q9BQI5 828 aa14.63□□□□□ -0.07
SCN9A-204ENST00000452182 PARP3Q9Y6F1 533 aa14.63□□□□□ -0.07
SCN9A-204ENST00000452182 NTSR2O95665 410 aa14.63□□□□□ -0.07
SCN9A-204ENST00000452182 SERPINB2P05120 415 aa14.63□□□□□ -0.07
SCN9A-204ENST00000452182 NBPF5PQ86XG9 351 aaPredicted RBP14.63□□□□□ -0.07
SCN9A-204ENST00000452182 TMEM57Q8N5G2 664 aa14.63□□□□□ -0.07
SCN9A-204ENST00000452182 PANK1Q8TE04 598 aa14.63□□□□□ -0.07
SCN9A-204ENST00000452182 UTP14AQ9BVJ6 771 aaKnown RBP14.63□□□□□ -0.07
SCN9A-204ENST00000452182 PCCAP05165 728 aaPredicted RBP14.62□□□□□ -0.07
SCN9A-204ENST00000452182 POLD1P28340 1107 aa14.62□□□□□ -0.07
SCN9A-204ENST00000452182 ZBTB38Q8NAP3 1195 aaPredicted RBP14.62□□□□□ -0.07
SCN9A-204ENST00000452182 SPON1Q9HCB6 807 aa14.62□□□□□ -0.07
SCN9A-204ENST00000452182 TRMT112Q9UI30 125 aaKnown RBP14.62□□□□□ -0.07
SCN9A-204ENST00000452182 UTYO14607 1347 aa14.62□□□□□ -0.07
SCN9A-204ENST00000452182 H7C1W4 665 aa14.61□□□□□ -0.07
SCN9A-204ENST00000452182 GRM8O00222 908 aa14.61□□□□□ -0.07
SCN9A-204ENST00000452182 PTGER2P43116 358 aa14.61□□□□□ -0.07
SCN9A-204ENST00000452182 MVPQ14764 893 aaKnown RBP14.61□□□□□ -0.07
SCN9A-204ENST00000452182 C20orf194Q5TEA3 1177 aa14.61□□□□□ -0.07
SCN9A-204ENST00000452182 SH3TC1Q8TE82 1336 aa14.61□□□□□ -0.07
SCN9A-204ENST00000452182 RIC1Q4ADV7 1423 aa14.61□□□□□ -0.07
SCN9A-204ENST00000452182 LAMB2P55268 1798 aa14.6□□□□□ -0.07
SCN9A-204ENST00000452182 CDHR2Q9BYE9 1310 aa14.6□□□□□ -0.07
SCN9A-204ENST00000452182 PRR5LQ6MZQ0 368 aa14.6□□□□□ -0.07
SCN9A-204ENST00000452182 CNBD1Q8NA66 436 aa14.6□□□□□ -0.07
SCN9A-204ENST00000452182 USP44Q9H0E7 712 aa14.6□□□□□ -0.07
SCN9A-204ENST00000452182 CASP7P55210 303 aa14.59□□□□□ -0.07
SCN9A-204ENST00000452182 SLC10A5Q5PT55 438 aa14.59□□□□□ -0.07
SCN9A-204ENST00000452182 ITPRIPQ8IWB1 547 aa14.59□□□□□ -0.07
SCN9A-204ENST00000452182 C9orf78Q9NZ63 289 aaPredicted RBP14.59□□□□□ -0.07
SCN9A-204ENST00000452182 DDX19BQ9UMR2 479 aa14.59□□□□□ -0.07
SCN9A-204ENST00000452182 KIF13BQ9NQT8 1826 aa14.59□□□□□ -0.07
SCN9A-204ENST00000452182 ZBTB7BO15156 539 aaPredicted RBP14.59□□□□□ -0.07
SCN9A-204ENST00000452182 HSP90B1P14625 803 aaKnown RBP14.59□□□□□ -0.07
SCN9A-204ENST00000452182 GTF2E1P29083 439 aaPredicted RBP14.59□□□□□ -0.07
SCN9A-204ENST00000452182 FAM89AQ96GI7 184 aa14.59□□□□□ -0.07
SCN9A-204ENST00000452182 COG6Q9Y2V7 657 aa14.59□□□□□ -0.07
SCN9A-204ENST00000452182 DDX60Q8IY21 1712 aaKnown RBP14.59□□□□□ -0.07
SCN9A-204ENST00000452182 FAM177BA6PVY3 158 aa14.58□□□□□ -0.08
SCN9A-204ENST00000452182 GNAI3P08754 354 aa14.58□□□□□ -0.08
SCN9A-204ENST00000452182 NBPF7P0C2Y1 421 aaPredicted RBP14.58□□□□□ -0.08
SCN9A-204ENST00000452182 ST5P78524 1137 aa14.58□□□□□ -0.08
SCN9A-204ENST00000452182 UBE3BQ7Z3V4 1068 aa14.58□□□□□ -0.08
SCN9A-204ENST00000452182 NUTM1Q86Y26 1132 aa14.58□□□□□ -0.08
SCN9A-204ENST00000452182 CHMP4BQ9H444 224 aaKnown RBP14.58□□□□□ -0.08
SCN9A-204ENST00000452182 HDAC5Q9UQL6 1122 aa14.58□□□□□ -0.08
SCN9A-204ENST00000452182 C10orf71Q711Q0 1435 aa14.57□□□□□ -0.08
SCN9A-204ENST00000452182 ANKRD31Q8N7Z5 1873 aa14.57□□□□□ -0.08
SCN9A-204ENST00000452182 NPHP1O15259 732 aa14.57□□□□□ -0.08
SCN9A-204ENST00000452182 ERFEQ4G0M1 354 aa14.57□□□□□ -0.08
SCN9A-204ENST00000452182 PLA2G12BQ9BX93 195 aa14.57□□□□□ -0.08
SCN9A-204ENST00000452182 MYH3P11055 1940 aa14.57□□□□□ -0.08
SCN9A-204ENST00000452182 ABCC12Q96J65 1359 aa14.57□□□□□ -0.08
SCN9A-204ENST00000452182 IRS4O14654 1257 aaPredicted RBP14.56□□□□□ -0.08
SCN9A-204ENST00000452182 MEIS3Q99687 375 aa14.56□□□□□ -0.08
SCN9A-204ENST00000452182 BRIP1Q9BX63 1249 aa14.56□□□□□ -0.08
SCN9A-204ENST00000452182 LRP5O75197 1615 aa14.56□□□□□ -0.08
SCN9A-204ENST00000452182 KLRG2A4D1S0 409 aaPredicted RBP14.55□□□□□ -0.08
SCN9A-204ENST00000452182 UBTFL1P0CB47 393 aaPredicted RBP14.55□□□□□ -0.08
SCN9A-204ENST00000452182 DSG3P32926 999 aa14.55□□□□□ -0.08
SCN9A-204ENST00000452182 SYNE4Q8N205 404 aa14.55□□□□□ -0.08
SCN9A-204ENST00000452182 TNRC6CQ9HCJ0 1690 aaKnown RBP14.55□□□□□ -0.08
SCN9A-204ENST00000452182 PDE8AO60658 829 aa14.55□□□□□ -0.08
SCN9A-204ENST00000452182 RTL5Q5HYW3 569 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms