RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 CHRNA5P30532 468 aa18.39■□□□□ 0.53
COL3A1-203ENST00000450867 SLC10A5Q5PT55 438 aa18.39■□□□□ 0.53
COL3A1-203ENST00000450867 UTP14AQ9BVJ6 771 aaKnown RBP18.39■□□□□ 0.53
COL3A1-203ENST00000450867 PIM2Q9P1W9 311 aa18.39■□□□□ 0.53
COL3A1-203ENST00000450867 MYH3P11055 1940 aa18.39■□□□□ 0.53
COL3A1-203ENST00000450867 SLX4Q8IY92 1834 aa18.38■□□□□ 0.53
COL3A1-203ENST00000450867 PI4KAP2A4QPH2 592 aa18.38■□□□□ 0.53
COL3A1-203ENST00000450867 H0YIN7 160 aa18.38■□□□□ 0.53
COL3A1-203ENST00000450867 SRGNP10124 158 aa18.38■□□□□ 0.53
COL3A1-203ENST00000450867 ALDH1L2Q3SY69 923 aa18.38■□□□□ 0.53
COL3A1-203ENST00000450867 CRY2Q49AN0 593 aa18.38■□□□□ 0.53
COL3A1-203ENST00000450867 C2CD5Q86YS7 1000 aa18.38■□□□□ 0.53
COL3A1-203ENST00000450867 PI4KAP1Q8N8J0 262 aa18.38■□□□□ 0.53
COL3A1-203ENST00000450867 NPHP1O15259 732 aa18.37■□□□□ 0.53
COL3A1-203ENST00000450867 GRIN3BO60391 1043 aa18.37■□□□□ 0.53
COL3A1-203ENST00000450867 GPR162Q16538 588 aa18.37■□□□□ 0.53
COL3A1-203ENST00000450867 ERFEQ4G0M1 354 aa18.37■□□□□ 0.53
COL3A1-203ENST00000450867 NUTM1Q86Y26 1132 aa18.37■□□□□ 0.53
COL3A1-203ENST00000450867 CCDC24Q8N4L8 307 aa18.37■□□□□ 0.53
COL3A1-203ENST00000450867 CCDC191Q8NCU4 936 aa18.37■□□□□ 0.53
COL3A1-203ENST00000450867 MAP3K2Q9Y2U5 619 aa18.37■□□□□ 0.53
COL3A1-203ENST00000450867 FAM177BA6PVY3 158 aa18.36■□□□□ 0.53
COL3A1-203ENST00000450867 FER1L6Q2WGJ9 1857 aa18.36■□□□□ 0.53
COL3A1-203ENST00000450867 STYK1Q6J9G0 422 aa18.36■□□□□ 0.53
COL3A1-203ENST00000450867 MRPL50Q8N5N7 158 aaKnown RBP18.36■□□□□ 0.53
COL3A1-203ENST00000450867 SBF1O95248 1867 aa18.35■□□□□ 0.53
COL3A1-203ENST00000450867 SH3TC1Q8TE82 1336 aa18.35■□□□□ 0.53
COL3A1-203ENST00000450867 ATP5J2-PTCD1G3V325 749 aa18.35■□□□□ 0.53
COL3A1-203ENST00000450867 GTF2E1P29083 439 aaPredicted RBP18.35■□□□□ 0.53
COL3A1-203ENST00000450867 BRPF1P55201 1214 aaPredicted RBP18.35■□□□□ 0.53
COL3A1-203ENST00000450867 FKBP5Q13451 457 aaPredicted RBP18.35■□□□□ 0.53
COL3A1-203ENST00000450867 DALRD3Q5D0E6 543 aaKnown RBP18.35■□□□□ 0.53
COL3A1-203ENST00000450867 SSH1Q8WYL5 1049 aa18.35■□□□□ 0.53
COL3A1-203ENST00000450867 MYD88Q99836 296 aa18.35■□□□□ 0.53
COL3A1-203ENST00000450867 IGKV5-2P06315 115 aa18.34■□□□□ 0.53
COL3A1-203ENST00000450867 NPR1P16066 1061 aa18.34■□□□□ 0.53
COL3A1-203ENST00000450867 DNAAF4Q8WXU2 420 aa18.34■□□□□ 0.53
COL3A1-203ENST00000450867 MASTLQ96GX5 879 aa18.34■□□□□ 0.53
COL3A1-203ENST00000450867 TRMT112Q9UI30 125 aaKnown RBP18.34■□□□□ 0.53
COL3A1-203ENST00000450867 HOXA10P31260 410 aaPredicted RBP18.33■□□□□ 0.52
COL3A1-203ENST00000450867 NEXNQ0ZGT2 675 aa18.33■□□□□ 0.52
COL3A1-203ENST00000450867 TTLL6Q8N841 843 aa18.33■□□□□ 0.52
COL3A1-203ENST00000450867 PTPRCP08575 1304 aa18.32■□□□□ 0.52
COL3A1-203ENST00000450867 PCCAP05165 728 aaPredicted RBP18.32■□□□□ 0.52
COL3A1-203ENST00000450867 PELP1Q8IZL8 1130 aaKnown RBP18.32■□□□□ 0.52
COL3A1-203ENST00000450867 ZBTB38Q8NAP3 1195 aaPredicted RBP18.32■□□□□ 0.52
COL3A1-203ENST00000450867 CNKSR1Q969H4 720 aa18.32■□□□□ 0.52
COL3A1-203ENST00000450867 CWC25Q9NXE8 425 aaPredicted RBP18.32■□□□□ 0.52
COL3A1-203ENST00000450867 BCS1LQ9Y276 419 aa18.32■□□□□ 0.52
COL3A1-203ENST00000450867 NEURL1BA8MQ27 555 aa18.31■□□□□ 0.52
COL3A1-203ENST00000450867 SYNE4Q8N205 404 aa18.31■□□□□ 0.52
COL3A1-203ENST00000450867 LINS1Q8NG48 757 aa18.31■□□□□ 0.52
COL3A1-203ENST00000450867 TAF1P21675 1872 aa18.31■□□□□ 0.52
COL3A1-203ENST00000450867 CCDC88AQ3V6T2 1871 aa18.31■□□□□ 0.52
COL3A1-203ENST00000450867 CDHR2Q9BYE9 1310 aa18.3■□□□□ 0.52
COL3A1-203ENST00000450867 DICER1Q9UPY3 1922 aaKnown RBP18.3■□□□□ 0.52
COL3A1-203ENST00000450867 RARSP54136 660 aaKnown RBP18.3■□□□□ 0.52
COL3A1-203ENST00000450867 C3orf67Q6ZVT6 689 aa18.3■□□□□ 0.52
COL3A1-203ENST00000450867 FAM89AQ96GI7 184 aa18.3■□□□□ 0.52
COL3A1-203ENST00000450867 NLRP3Q96P20 1036 aa18.3■□□□□ 0.52
COL3A1-203ENST00000450867 BEND3Q5T5X7 828 aa18.29■□□□□ 0.52
COL3A1-203ENST00000450867 ZNF622Q969S3 477 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL3A1-203ENST00000450867 CRAMP1Q96RY5 1269 aa18.29■□□□□ 0.52
COL3A1-203ENST00000450867 SMC4Q9NTJ3 1288 aa18.29■□□□□ 0.52
COL3A1-203ENST00000450867 WWC3Q9ULE0 1092 aa18.29■□□□□ 0.52
COL3A1-203ENST00000450867 LRRC37AA6NMS7 1700 aa18.29■□□□□ 0.52
COL3A1-203ENST00000450867 F6X3S4 739 aa18.28■□□□□ 0.52
COL3A1-203ENST00000450867 HCLS1P14317 486 aaPredicted RBP18.28■□□□□ 0.52
COL3A1-203ENST00000450867 HSP90B1P14625 803 aaKnown RBP18.28■□□□□ 0.52
COL3A1-203ENST00000450867 ALDH1B1P30837 517 aa18.28■□□□□ 0.52
COL3A1-203ENST00000450867 CWF19L2Q2TBE0 894 aaKnown RBP18.28■□□□□ 0.52
COL3A1-203ENST00000450867 PRPF40BQ6NWY9 871 aaKnown RBP18.28■□□□□ 0.52
COL3A1-203ENST00000450867 C7orf43Q8WVR3 580 aa18.28■□□□□ 0.52
COL3A1-203ENST00000450867 SNED1Q8TER0 1413 aa18.27■□□□□ 0.52
COL3A1-203ENST00000450867 H7C1W4 665 aa18.27■□□□□ 0.52
COL3A1-203ENST00000450867 IRS4O14654 1257 aaPredicted RBP18.27■□□□□ 0.52
COL3A1-203ENST00000450867 GCKRQ14397 625 aa18.27■□□□□ 0.52
COL3A1-203ENST00000450867 SF3B3Q15393 1217 aaKnown RBP18.27■□□□□ 0.52
COL3A1-203ENST00000450867 BCL2L13Q9BXK5 485 aa18.27■□□□□ 0.52
COL3A1-203ENST00000450867 ALDH1L1O75891 902 aa18.26■□□□□ 0.51
COL3A1-203ENST00000450867 RPGRQ92834 1020 aaKnown RBP18.26■□□□□ 0.51
COL3A1-203ENST00000450867 KIF16BQ96L93 1317 aa18.25■□□□□ 0.51
COL3A1-203ENST00000450867 CASP7P55210 303 aa18.25■□□□□ 0.51
COL3A1-203ENST00000450867 SOGA3Q5TF21 947 aa18.25■□□□□ 0.51
COL3A1-203ENST00000450867 RBM17Q96I25 401 aaKnown RBP18.25■□□□□ 0.51
COL3A1-203ENST00000450867 PDE8AO60658 829 aa18.24■□□□□ 0.51
COL3A1-203ENST00000450867 ARHGAP45Q92619 1136 aa18.24■□□□□ 0.51
COL3A1-203ENST00000450867 PLA2G12BQ9BX93 195 aa18.24■□□□□ 0.51
COL3A1-203ENST00000450867 COL4A1P02462 1669 aa18.24■□□□□ 0.51
COL3A1-203ENST00000450867 ABCC4O15439 1325 aa18.23■□□□□ 0.51
COL3A1-203ENST00000450867 LTBP3Q9NS15 1303 aa18.23■□□□□ 0.51
COL3A1-203ENST00000450867 RTL9Q8NET4 1388 aa18.23■□□□□ 0.51
COL3A1-203ENST00000450867 SRCIN1Q9C0H9 1055 aa18.23■□□□□ 0.51
COL3A1-203ENST00000450867 C21orf2O43822 256 aa18.22■□□□□ 0.51
COL3A1-203ENST00000450867 RTL5Q5HYW3 569 aaPredicted RBP18.22■□□□□ 0.51
COL3A1-203ENST00000450867 ARHGAP27Q6ZUM4 889 aa18.22■□□□□ 0.51
COL3A1-203ENST00000450867 UBE3BQ7Z3V4 1068 aa18.22■□□□□ 0.51
COL3A1-203ENST00000450867 LTBP1Q14766 1721 aa18.22■□□□□ 0.51
COL3A1-203ENST00000450867 TIAM2Q8IVF5 1701 aa18.22■□□□□ 0.51
COL3A1-203ENST00000450867 UTYO14607 1347 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms