RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 CCDC171Q6TFL3 1326 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 USP42Q9H9J4 1324 aaKnown RBP11.32□□□□□ -0.6
KLHL3-202ENST00000447439 F13A1P00488 732 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 EVI5LQ96CN4 794 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 GPATCH3Q96I76 525 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 PDLIM2Q96JY6 352 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 ZNF830Q96NB3 372 aaPredicted RBP11.32□□□□□ -0.6
KLHL3-202ENST00000447439 CHD2O14647 1828 aaKnown RBP11.32□□□□□ -0.6
KLHL3-202ENST00000447439 NEURL1BA8MQ27 555 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 CCDC129Q6ZRS4 1044 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 RUFY2Q8WXA3 655 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 CYP46A1Q9Y6A2 500 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 HEG1Q9ULI3 1381 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 PHRF1Q9P1Y6 1649 aaKnown RBP11.31□□□□□ -0.6
KLHL3-202ENST00000447439 DDX58O95786 925 aaKnown RBP11.31□□□□□ -0.6
KLHL3-202ENST00000447439 HCLS1P14317 486 aaPredicted RBP11.31□□□□□ -0.6
KLHL3-202ENST00000447439 NECTIN1Q15223 517 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 GIMAP6Q6P9H5 292 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 UBE3BQ7Z3V4 1068 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 SEC62Q99442 399 aaKnown RBP11.31□□□□□ -0.6
KLHL3-202ENST00000447439 SLC52A2Q9HAB3 445 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 LMO7Q8WWI1 1683 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 SLC27A2O14975 620 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 PLCB2Q00722 1185 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 GCKRQ14397 625 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 DNAJC2Q99543 621 aaKnown RBP11.31□□□□□ -0.6
KLHL3-202ENST00000447439 ZSWIM6Q9HCJ5 1215 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 USP25Q9UHP3 1055 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 MTMR6Q9Y217 621 aa11.31□□□□□ -0.6
KLHL3-202ENST00000447439 R3HCC1Q9Y3T6 440 aaKnown RBP11.31□□□□□ -0.6
KLHL3-202ENST00000447439 KDM6AO15550 1401 aaPredicted RBP11.31□□□□□ -0.6
KLHL3-202ENST00000447439 NPHP3Q7Z494 1330 aa11.3□□□□□ -0.6
KLHL3-202ENST00000447439 PPFIA3O75145 1194 aa11.3□□□□□ -0.6
KLHL3-202ENST00000447439 PTMAP06454 111 aaKnown RBP11.3□□□□□ -0.6
KLHL3-202ENST00000447439 PHKG2P15735 406 aa11.3□□□□□ -0.6
KLHL3-202ENST00000447439 TFCP2Q12800 502 aa11.3□□□□□ -0.6
KLHL3-202ENST00000447439 ERC1Q8IUD2 1116 aa11.3□□□□□ -0.6
KLHL3-202ENST00000447439 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.3□□□□□ -0.6
KLHL3-202ENST00000447439 NPHP4O75161 1426 aaPredicted RBP11.3□□□□□ -0.6
KLHL3-202ENST00000447439 FOSBP53539 338 aa11.29□□□□□ -0.6
KLHL3-202ENST00000447439 NEXNQ0ZGT2 675 aa11.29□□□□□ -0.6
KLHL3-202ENST00000447439 VPS53Q5VIR6 699 aa11.29□□□□□ -0.6
KLHL3-202ENST00000447439 CDC37L1Q7L3B6 337 aa11.29□□□□□ -0.6
KLHL3-202ENST00000447439 DBNLQ9UJU6 430 aaKnown RBP11.29□□□□□ -0.6
KLHL3-202ENST00000447439 NOL7Q9UMY1 257 aaKnown RBP11.29□□□□□ -0.6
KLHL3-202ENST00000447439 ZKSCAN1P17029 563 aaPredicted RBP11.29□□□□□ -0.6
KLHL3-202ENST00000447439 LARP1Q6PKG0 1096 aaKnown RBP11.29□□□□□ -0.6
KLHL3-202ENST00000447439 C17orf53Q8N3J3 647 aaPredicted RBP11.29□□□□□ -0.6
KLHL3-202ENST00000447439 LRRC2Q9BYS8 371 aa11.29□□□□□ -0.6
KLHL3-202ENST00000447439 MEGF6O75095 1541 aa11.29□□□□□ -0.6
KLHL3-202ENST00000447439 CYP27B1O15528 508 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 TATP17735 454 aaPredicted RBP11.28□□□□□ -0.6
KLHL3-202ENST00000447439 ANKRD13DQ6ZTN6 518 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 DDX46Q7L014 1031 aaKnown RBP11.28□□□□□ -0.6
KLHL3-202ENST00000447439 MAP4K1Q92918 833 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 SYAP1Q96A49 352 aaPredicted RBP11.28□□□□□ -0.6
KLHL3-202ENST00000447439 DBNDD2Q9BQY9 259 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 CRYBG1Q9Y4K1 1723 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 COL15A1P39059 1388 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 RGPD5Q99666 1765 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 RBM10P98175 930 aaKnown RBP11.28□□□□□ -0.6
KLHL3-202ENST00000447439 TCHHQ07283 1943 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 NCAPD2Q15021 1401 aa11.28□□□□□ -0.6
KLHL3-202ENST00000447439 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.27□□□□□ -0.6
KLHL3-202ENST00000447439 CAMK4Q16566 473 aa11.27□□□□□ -0.6
KLHL3-202ENST00000447439 CCDC183Q5T5S1 534 aa11.27□□□□□ -0.6
KLHL3-202ENST00000447439 TTC5Q8N0Z6 440 aa11.27□□□□□ -0.6
KLHL3-202ENST00000447439 METTL22Q9BUU2 404 aaPredicted RBP11.27□□□□□ -0.6
KLHL3-202ENST00000447439 CHMP4AQ9BY43 222 aa11.27□□□□□ -0.6
KLHL3-202ENST00000447439 TFIP11Q9UBB9 837 aaKnown RBP11.27□□□□□ -0.6
KLHL3-202ENST00000447439 SLIT3O75094 1523 aa11.27□□□□□ -0.61
KLHL3-202ENST00000447439 UTYO14607 1347 aa11.27□□□□□ -0.61
KLHL3-202ENST00000447439 A0A087WZG4 1122 aa11.27□□□□□ -0.61
KLHL3-202ENST00000447439 EPB41L2O43491 1005 aaKnown RBP11.27□□□□□ -0.61
KLHL3-202ENST00000447439 OFD1O75665 1012 aa11.27□□□□□ -0.61
KLHL3-202ENST00000447439 LARP1BQ659C4 914 aaKnown RBP11.27□□□□□ -0.61
KLHL3-202ENST00000447439 ZKSCAN5Q9Y2L8 839 aa11.27□□□□□ -0.61
KLHL3-202ENST00000447439 C1orf167Q5SNV9 1468 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 A0A0G2JLW4 131 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 JAK2O60674 1132 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 UBE2HP62256 183 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 PTPN12Q05209 780 aaKnown RBP11.26□□□□□ -0.61
KLHL3-202ENST00000447439 TOB2Q14106 344 aaPredicted RBP11.26□□□□□ -0.61
KLHL3-202ENST00000447439 BLOC1S2Q6QNY1 142 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 DDX11Q96FC9 970 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.26□□□□□ -0.61
KLHL3-202ENST00000447439 TNNI3KQ59H18 835 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 LRP10Q7Z4F1 713 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 FPGT-TNNI3KV9GXZ4 949 aa11.26□□□□□ -0.61
KLHL3-202ENST00000447439 C5P01031 1676 aa11.25□□□□□ -0.61
KLHL3-202ENST00000447439 RFX5P48382 616 aaPredicted RBP11.25□□□□□ -0.61
KLHL3-202ENST00000447439 TMEM87AQ8NBN3 555 aa11.25□□□□□ -0.61
KLHL3-202ENST00000447439 ARID3AQ99856 593 aa11.25□□□□□ -0.61
KLHL3-202ENST00000447439 TTC12Q9H892 705 aaPredicted RBP11.25□□□□□ -0.61
KLHL3-202ENST00000447439 AP5Z1O43299 807 aa11.25□□□□□ -0.61
KLHL3-202ENST00000447439 TAF5LO75529 589 aa11.25□□□□□ -0.61
KLHL3-202ENST00000447439 ADCY5O95622 1261 aa11.25□□□□□ -0.61
KLHL3-202ENST00000447439 CABP4P57796 275 aa11.25□□□□□ -0.61
KLHL3-202ENST00000447439 LMBR1LQ6UX01 489 aa11.25□□□□□ -0.61
KLHL3-202ENST00000447439 TTC6Q86TZ1 520 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms