RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 NPR3P17342 541 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 PBX2P40425 430 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 EVA1CP58658 441 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 ARSIQ5FYB1 569 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 ATCAYQ86WG3 371 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 TNS4Q8IZW8 715 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 TMTC2Q8N394 836 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 STAG1Q8WVM7 1258 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 EDEM1Q92611 657 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 ALKBH8Q96BT7 664 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 NGLY1Q96IV0 654 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 BSDC1Q9NW68 430 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 SERTAD1Q9UHV2 236 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 TTF2Q9UNY4 1162 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 ESYT3A0FGR9 886 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 M0R2N6 131 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 DKK1O94907 266 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 TRIM37O94972 964 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 LDHAP00338 332 aaKnown RBP3□□□□□ -1.93
CCDC88A-208ENST00000444458 F12P00748 615 aaPredicted RBP3□□□□□ -1.93
CCDC88A-208ENST00000444458 JUNDP17535 347 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 ATF3P18847 181 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 FOXD4Q12950 439 aaPredicted RBP3□□□□□ -1.93
CCDC88A-208ENST00000444458 LARP7Q4G0J3 582 aaKnown RBP eCLIP3□□□□□ -1.93
CCDC88A-208ENST00000444458 MEI1Q5TIA1 1274 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 RNF19BQ6ZMZ0 732 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 CCDC24Q8N4L8 307 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 NUDT12Q9BQG2 462 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 SFMBT1Q9UHJ3 866 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 MINDY4BA8MYZ0 360 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 EIF1AYO14602 144 aaKnown RBP3□□□□□ -1.93
CCDC88A-208ENST00000444458 ZPR1O75312 459 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 CTSHP09668 335 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 CNGB1Q14028 1251 aaPredicted RBP3□□□□□ -1.93
CCDC88A-208ENST00000444458 C4orf46Q504U0 113 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 MORN1Q5T089 497 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 CCSAPQ6IQ19 270 aaPredicted RBP3□□□□□ -1.93
CCDC88A-208ENST00000444458 SLC4A10Q6U841 1118 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 RELL1Q8IUW5 271 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 KHSRPQ92945 711 aaKnown RBP eCLIP3□□□□□ -1.935e-7■■■■□ 19.6
CCDC88A-208ENST00000444458 C8orf48Q96LL4 319 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 KCNK17Q96T54 332 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 ZNF358Q9NW07 568 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 FOSP01100 380 aaPredicted RBP3□□□□□ -1.93
CCDC88A-208ENST00000444458 ETFBP38117 255 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 ORC1Q13415 861 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 FBXW10Q5XX13 1052 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 C11orf96Q7Z7L8 435 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 EVI5LQ96CN4 794 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 RBSNQ9H1K0 784 aa3□□□□□ -1.93
CCDC88A-208ENST00000444458 APLP1P51693 650 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 SERINC3Q13530 473 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 RAB33AQ14088 237 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 WWC2Q6AWC2 1192 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 C16orf86Q6ZW13 317 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 TSR2Q969E8 191 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 DNAJC7Q99615 494 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 FEZ1Q99689 392 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 STRIP2Q9ULQ0 834 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 FAM221BA6H8Z2 402 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 DLL1O00548 723 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 MYL1P05976 194 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 ZEB1P37275 1124 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 PTPN12Q05209 780 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 UBE4AQ14139 1066 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 BLOC1S3Q6QNY0 202 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 SAMD7Q7Z3H4 446 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 TSPAN10Q9H1Z9 355 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 C12orf49Q9H741 205 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 ST7Q9NRC1 585 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 GNL3LQ9NVN8 582 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 CPNE3O75131 537 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 USP17L7P0C7H9 530 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 GBP2P32456 591 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 MASP1P48740 699 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 DOK7Q18PE1 504 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 MAP9Q49MG5 647 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 KSR2Q6VAB6 950 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 TRPM4Q8TD43 1214 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 CRBNQ96SW2 442 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 KBTBD4Q9NVX7 518 aa2.99□□□□□ -1.93
CCDC88A-208ENST00000444458 GADD45BO75293 160 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 PWP1Q13610 501 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 SYCP2LQ5T4T6 812 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 L1TD1Q5T7N2 865 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 PRR14Q9BWN1 585 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 COPRSQ9NQ92 184 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 FAM8A1Q9UBU6 413 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 MCM8Q9UJA3 840 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 LHX6Q9UPM6 363 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 F6X3S4 739 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 DHX8Q14562 1220 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 MTERF2Q49AM1 385 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 TBCELQ5QJ74 424 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 COX20Q5RI15 118 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 ATL2Q8NHH9 583 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 ESPNB1AK53 854 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 OPLAHO14841 1288 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 GIPC1O14908 333 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms