RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 NHSQ6T4R5 1651 aa15.58■□□□□ 0.08
COL28A1-204ENST00000444268 SBF2Q86WG5 1849 aa15.58■□□□□ 0.08
COL28A1-204ENST00000444268 SKOR2Q2VWA4 1001 aaPredicted RBP15.57■□□□□ 0.08
COL28A1-204ENST00000444268 L1TD1Q5T7N2 865 aaKnown RBP15.57■□□□□ 0.08
COL28A1-204ENST00000444268 TSHZ3Q63HK5 1081 aa15.57■□□□□ 0.08
COL28A1-204ENST00000444268 GOLGA6L22H0YM25 854 aa15.57■□□□□ 0.08
COL28A1-204ENST00000444268 NUTM1Q86Y26 1132 aa15.57■□□□□ 0.08
COL28A1-204ENST00000444268 PI4K2BQ8TCG2 481 aa15.57■□□□□ 0.08
COL28A1-204ENST00000444268 TNPO1Q92973 898 aaKnown RBP15.57■□□□□ 0.08
COL28A1-204ENST00000444268 BTAF1O14981 1849 aa15.56■□□□□ 0.08
COL28A1-204ENST00000444268 COL15A1P39059 1388 aa15.56■□□□□ 0.08
COL28A1-204ENST00000444268 CWF19L2Q2TBE0 894 aaKnown RBP15.56■□□□□ 0.08
COL28A1-204ENST00000444268 CLEC17AQ6ZS10 378 aa15.56■□□□□ 0.08
COL28A1-204ENST00000444268 DNAJC10Q8IXB1 793 aa15.56■□□□□ 0.08
COL28A1-204ENST00000444268 ANO2Q9NQ90 1003 aa15.56■□□□□ 0.08
COL28A1-204ENST00000444268 AIMP1Q12904 312 aaKnown RBP15.55■□□□□ 0.08
COL28A1-204ENST00000444268 RUFY2Q8WXA3 655 aa15.55■□□□□ 0.08
COL28A1-204ENST00000444268 METTL22Q9BUU2 404 aaPredicted RBP15.55■□□□□ 0.08
COL28A1-204ENST00000444268 ARFGEF2Q9Y6D5 1785 aa15.55■□□□□ 0.08
COL28A1-204ENST00000444268 PALLDQ8WX93 1383 aa15.55■□□□□ 0.08
COL28A1-204ENST00000444268 TRAK2O60296 914 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 MYL6BP14649 208 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 ECHDC1Q9NTX5 307 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 ISY1Q9ULR0 285 aaKnown RBP15.54■□□□□ 0.08
COL28A1-204ENST00000444268 AFDNP55196 1824 aaKnown RBP15.54■□□□□ 0.08
COL28A1-204ENST00000444268 TJP1Q07157 1748 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 EP400Q96L91 3159 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 NEURL1BA8MQ27 555 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 A1BGP04217 495 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 IFIT2P09913 472 aaKnown RBP15.54■□□□□ 0.08
COL28A1-204ENST00000444268 KCNQ4P56696 695 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 G3BP1Q13283 466 aaKnown RBP eCLIP15.54■□□□□ 0.08
COL28A1-204ENST00000444268 ANKRD13DQ6ZTN6 518 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 XAGE3Q8WTP9 111 aa15.54■□□□□ 0.08
COL28A1-204ENST00000444268 GCKRQ14397 625 aa15.53■□□□□ 0.08
COL28A1-204ENST00000444268 COPS6Q7L5N1 327 aa15.53■□□□□ 0.08
COL28A1-204ENST00000444268 SUCLG2Q96I99 432 aa15.53■□□□□ 0.08
COL28A1-204ENST00000444268 NBPF26B4DH59 902 aa15.52■□□□□ 0.08
COL28A1-204ENST00000444268 IGKV5-2P06315 115 aa15.52■□□□□ 0.08
COL28A1-204ENST00000444268 NEK4P51957 841 aa15.52■□□□□ 0.08
COL28A1-204ENST00000444268 NBPF14Q5TI25 921 aa15.52■□□□□ 0.08
COL28A1-204ENST00000444268 NBPF10Q6P3W6 841 aaKnown RBP15.52■□□□□ 0.08
COL28A1-204ENST00000444268 NBPF15Q8N660 670 aa15.52■□□□□ 0.08
COL28A1-204ENST00000444268 BICC1Q9H694 974 aaKnown RBP15.52■□□□□ 0.08
COL28A1-204ENST00000444268 LOC102724428A0A0B4J2F2 783 aa15.52■□□□□ 0.07
COL28A1-204ENST00000444268 HIP1O00291 1037 aa15.52■□□□□ 0.07
COL28A1-204ENST00000444268 TRIM37O94972 964 aa15.52■□□□□ 0.07
COL28A1-204ENST00000444268 SIK1P57059 783 aa15.52■□□□□ 0.07
COL28A1-204ENST00000444268 ITPK1Q13572 414 aa15.52■□□□□ 0.07
COL28A1-204ENST00000444268 FAM196AQ6ZSG2 479 aa15.52■□□□□ 0.07
COL28A1-204ENST00000444268 KIAA1211Q6ZU35 1233 aa15.52■□□□□ 0.07
COL28A1-204ENST00000444268 LRP10Q7Z4F1 713 aa15.52■□□□□ 0.07
COL28A1-204ENST00000444268 RAD50Q92878 1312 aa15.51■□□□□ 0.07
COL28A1-204ENST00000444268 SGSM2O43147 1006 aa15.51■□□□□ 0.07
COL28A1-204ENST00000444268 HSPA4P34932 840 aa15.51■□□□□ 0.07
COL28A1-204ENST00000444268 ATP6V1AP38606 617 aa15.51■□□□□ 0.07
COL28A1-204ENST00000444268 VSIG10Q8N0Z9 540 aa15.51■□□□□ 0.07
COL28A1-204ENST00000444268 PLBD2Q8NHP8 589 aa15.51■□□□□ 0.07
COL28A1-204ENST00000444268 MYD88Q99836 296 aa15.51■□□□□ 0.07
COL28A1-204ENST00000444268 DIAPH3Q9NSV4 1193 aa15.51■□□□□ 0.07
COL28A1-204ENST00000444268 EVI5LQ96CN4 794 aa15.5■□□□□ 0.07
COL28A1-204ENST00000444268 FOXD4L1Q9NU39 408 aa15.5■□□□□ 0.07
COL28A1-204ENST00000444268 CYP19A1P11511 503 aaPredicted RBP15.49■□□□□ 0.07
COL28A1-204ENST00000444268 SMARCC1Q92922 1105 aaPredicted RBP15.49■□□□□ 0.07
COL28A1-204ENST00000444268 INTS4Q96HW7 963 aaKnown RBP15.49■□□□□ 0.07
COL28A1-204ENST00000444268 KAZALD1Q96I82 304 aa15.49■□□□□ 0.07
COL28A1-204ENST00000444268 BCL11BQ9C0K0 894 aaPredicted RBP15.49■□□□□ 0.07
COL28A1-204ENST00000444268 AACSQ86V21 672 aa15.49■□□□□ 0.07
COL28A1-204ENST00000444268 GOLGA6L3A6NEY3 463 aa15.48■□□□□ 0.07
COL28A1-204ENST00000444268 CYP2E1P05181 493 aaPredicted RBP15.48■□□□□ 0.07
COL28A1-204ENST00000444268 SSFA2P28290 1259 aa15.47■□□□□ 0.07
COL28A1-204ENST00000444268 CUL4AQ13619 759 aa15.47■□□□□ 0.07
COL28A1-204ENST00000444268 COPRSQ9NQ92 184 aa15.47■□□□□ 0.07
COL28A1-204ENST00000444268 PA2G4Q9UQ80 394 aaKnown RBP15.47■□□□□ 0.07
COL28A1-204ENST00000444268 ZBTB1Q9Y2K1 713 aa15.47■□□□□ 0.07
COL28A1-204ENST00000444268 ZNF330Q9Y3S2 320 aaPredicted RBP15.47■□□□□ 0.07
COL28A1-204ENST00000444268 NUP188Q5SRE5 1749 aa15.47■□□□□ 0.07
COL28A1-204ENST00000444268 STARD3NLO95772 234 aa15.47■□□□□ 0.07
COL28A1-204ENST00000444268 RABL6Q3YEC7 729 aaPredicted RBP15.47■□□□□ 0.07
COL28A1-204ENST00000444268 TMX3Q96JJ7 454 aa15.47■□□□□ 0.07
COL28A1-204ENST00000444268 TEX13AQ9BXU3 409 aaPredicted RBP15.47■□□□□ 0.07
COL28A1-204ENST00000444268 LY75O60449 1722 aa15.46■□□□□ 0.07
COL28A1-204ENST00000444268 SASH1O94885 1247 aa15.46■□□□□ 0.07
COL28A1-204ENST00000444268 BAG4O95429 457 aaKnown RBP15.46■□□□□ 0.07
COL28A1-204ENST00000444268 TTLL7Q6ZT98 887 aa15.46■□□□□ 0.07
COL28A1-204ENST00000444268 LINC00116Q8NCU8 138 aa15.46■□□□□ 0.07
COL28A1-204ENST00000444268 PALD1Q9ULE6 856 aa15.46■□□□□ 0.07
COL28A1-204ENST00000444268 COL5A3P25940 1745 aaPredicted RBP15.46■□□□□ 0.06
COL28A1-204ENST00000444268 CICQ96RK0 1608 aaPredicted RBP15.45■□□□□ 0.06
COL28A1-204ENST00000444268 MAP4K4O95819 1239 aaPredicted RBP15.45■□□□□ 0.06
COL28A1-204ENST00000444268 CRKLP46109 303 aaKnown RBP15.45■□□□□ 0.06
COL28A1-204ENST00000444268 LSG1Q9H089 658 aaKnown RBP15.45■□□□□ 0.06
COL28A1-204ENST00000444268 MYH14Q7Z406 1995 aaKnown RBP15.45■□□□□ 0.06
COL28A1-204ENST00000444268 FSD2A1L4K1 749 aa15.44■□□□□ 0.06
COL28A1-204ENST00000444268 INTS5Q6P9B9 1019 aaKnown RBP15.44■□□□□ 0.06
COL28A1-204ENST00000444268 CWC27Q6UX04 472 aaKnown RBP15.44■□□□□ 0.06
COL28A1-204ENST00000444268 CCNL1Q9UK58 526 aaPredicted RBP15.44■□□□□ 0.06
COL28A1-204ENST00000444268 A0A087WZG4 1122 aa15.44■□□□□ 0.06
COL28A1-204ENST00000444268 SMIM5Q71RC9 77 aa15.44■□□□□ 0.06
COL28A1-204ENST00000444268 RFX7Q2KHR2 1363 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms