RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 GTF2E1P29083 439 aaPredicted RBP10.22□□□□□ -0.77
CD44-211ENST00000442151 NBPF5PQ86XG9 351 aaPredicted RBP10.22□□□□□ -0.77
CD44-211ENST00000442151 MASTLQ96GX5 879 aa10.22□□□□□ -0.77
CD44-211ENST00000442151 USP16Q9Y5T5 823 aa10.22□□□□□ -0.77
CD44-211ENST00000442151 ARFGEF1Q9Y6D6 1849 aa10.22□□□□□ -0.77
CD44-211ENST00000442151 KIF6Q6ZMV9 814 aa10.21□□□□□ -0.77
CD44-211ENST00000442151 ERVV-1B6SEH8 477 aa10.21□□□□□ -0.78
CD44-211ENST00000442151 KCNQ3O43525 872 aa10.21□□□□□ -0.78
CD44-211ENST00000442151 HOXB1P14653 301 aaPredicted RBP10.21□□□□□ -0.78
CD44-211ENST00000442151 ALDH1B1P30837 517 aa10.21□□□□□ -0.78
CD44-211ENST00000442151 GRIPAP1Q4V328 841 aa10.21□□□□□ -0.78
CD44-211ENST00000442151 PRR5LQ6MZQ0 368 aa10.21□□□□□ -0.78
CD44-211ENST00000442151 ERBB4Q15303 1308 aa10.21□□□□□ -0.78
CD44-211ENST00000442151 VEGFAP15692 232 aaPredicted RBP10.2□□□□□ -0.78
CD44-211ENST00000442151 TMX4Q9H1E5 349 aaPredicted RBP10.2□□□□□ -0.78
CD44-211ENST00000442151 KIAA1551Q9HCM1 1747 aa10.2□□□□□ -0.78
CD44-211ENST00000442151 SIPA1L3O60292 1781 aaPredicted RBP10.2□□□□□ -0.78
CD44-211ENST00000442151 GLTPD2A6NH11 291 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 NPR1P16066 1061 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 DCTN1Q14203 1278 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 WDR43Q15061 677 aaKnown RBP eCLIP10.19□□□□□ -0.78
CD44-211ENST00000442151 PDCD7Q8N8D1 485 aaKnown RBP10.19□□□□□ -0.78
CD44-211ENST00000442151 PLEKHF1Q96S99 279 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 CHMP4AQ9BY43 222 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 NIP7Q9Y221 180 aaKnown RBP eCLIP10.19□□□□□ -0.78
CD44-211ENST00000442151 NRXN2Q9P2S2 1712 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 RIPK4P57078 832 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 CC2D2BQ6DHV5 1058 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 SMC1BQ8NDV3 1235 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 RRAGCQ9HB90 399 aa10.19□□□□□ -0.78
CD44-211ENST00000442151 BRCA1P38398 1863 aaKnown RBP10.18□□□□□ -0.78
CD44-211ENST00000442151 SRGNP10124 158 aa10.18□□□□□ -0.78
CD44-211ENST00000442151 EIF4A1P60842 406 aaKnown RBP10.18□□□□□ -0.78
CD44-211ENST00000442151 RTKN2Q8IZC4 609 aa10.18□□□□□ -0.78
CD44-211ENST00000442151 TAOK3Q9H2K8 898 aa10.18□□□□□ -0.78
CD44-211ENST00000442151 TSPYL4Q9UJ04 414 aa10.18□□□□□ -0.78
CD44-211ENST00000442151 MYBBP1AQ9BQG0 1328 aaKnown RBP10.18□□□□□ -0.78
CD44-211ENST00000442151 LTBP3Q9NS15 1303 aa10.18□□□□□ -0.78
CD44-211ENST00000442151 C21orf2O43822 256 aa10.17□□□□□ -0.78
CD44-211ENST00000442151 ERFEQ4G0M1 354 aa10.17□□□□□ -0.78
CD44-211ENST00000442151 CCDC93Q567U6 631 aa10.17□□□□□ -0.78
CD44-211ENST00000442151 NMRK2Q9NPI5 230 aa10.17□□□□□ -0.78
CD44-211ENST00000442151 RRP7AQ9Y3A4 280 aaKnown RBP10.17□□□□□ -0.78
CD44-211ENST00000442151 AFDNP55196 1824 aaKnown RBP10.17□□□□□ -0.78
CD44-211ENST00000442151 DDX10Q13206 875 aaKnown RBP10.17□□□□□ -0.78
CD44-211ENST00000442151 HSP90AB3PQ58FF7 597 aa10.17□□□□□ -0.78
CD44-211ENST00000442151 PPP1R42Q7Z4L9 355 aa10.17□□□□□ -0.78
CD44-211ENST00000442151 KLRG2A4D1S0 409 aaPredicted RBP10.16□□□□□ -0.78
CD44-211ENST00000442151 CALD1Q05682 793 aaKnown RBP10.16□□□□□ -0.78
CD44-211ENST00000442151 PARP10Q53GL7 1025 aa10.16□□□□□ -0.78
CD44-211ENST00000442151 RUNDC1Q96C34 613 aa10.16□□□□□ -0.78
CD44-211ENST00000442151 MIS18AQ9NYP9 233 aa10.16□□□□□ -0.78
CD44-211ENST00000442151 ZBTB47Q9UFB7 747 aaPredicted RBP10.16□□□□□ -0.78
CD44-211ENST00000442151 MAP3K15Q6ZN16 1313 aa10.16□□□□□ -0.78
CD44-211ENST00000442151 CEP350Q5VT06 3117 aa10.16□□□□□ -0.78
CD44-211ENST00000442151 NBPF26B4DH59 902 aa10.15□□□□□ -0.78
CD44-211ENST00000442151 TMPOP42166 694 aaKnown RBP10.15□□□□□ -0.78
CD44-211ENST00000442151 RASSF7Q02833 373 aa10.15□□□□□ -0.78
CD44-211ENST00000442151 PRPF40BQ6NWY9 871 aaKnown RBP10.15□□□□□ -0.78
CD44-211ENST00000442151 NBPF10Q6P3W6 841 aaKnown RBP10.15□□□□□ -0.78
CD44-211ENST00000442151 NGEFQ8N5V2 710 aa10.15□□□□□ -0.78
CD44-211ENST00000442151 NBPF15Q8N660 670 aa10.15□□□□□ -0.78
CD44-211ENST00000442151 FAM212AQ96EL1 285 aa10.15□□□□□ -0.78
CD44-211ENST00000442151 SCN7AQ01118 1682 aa10.15□□□□□ -0.79
CD44-211ENST00000442151 IQCA1LA6NCM1 817 aa10.14□□□□□ -0.79
CD44-211ENST00000442151 NUBP1P53384 320 aa10.14□□□□□ -0.79
CD44-211ENST00000442151 ZNF710Q8N1W2 664 aa10.14□□□□□ -0.79
CD44-211ENST00000442151 RPGRQ92834 1020 aaKnown RBP10.14□□□□□ -0.79
CD44-211ENST00000442151 RNF123Q5XPI4 1314 aa10.14□□□□□ -0.79
CD44-211ENST00000442151 PRAMEF22A3QJZ6 481 aa10.14□□□□□ -0.79
CD44-211ENST00000442151 HOXB3P14651 431 aaPredicted RBP10.14□□□□□ -0.79
CD44-211ENST00000442151 ZEB1P37275 1124 aaPredicted RBP10.14□□□□□ -0.79
CD44-211ENST00000442151 FKBP4Q02790 459 aaKnown RBP eCLIP10.14□□□□□ -0.79
CD44-211ENST00000442151 RBM17Q96I25 401 aaKnown RBP10.14□□□□□ -0.79
CD44-211ENST00000442151 DLEC1Q9Y238 1755 aa10.13□□□□□ -0.79
CD44-211ENST00000442151 IBTKQ9P2D0 1353 aaPredicted RBP10.13□□□□□ -0.79
CD44-211ENST00000442151 NFKBIEO00221 500 aa10.13□□□□□ -0.79
CD44-211ENST00000442151 MYL6BP14649 208 aa10.13□□□□□ -0.79
CD44-211ENST00000442151 PIP4K2AP48426 406 aaPredicted RBP10.13□□□□□ -0.79
CD44-211ENST00000442151 GIGYF2Q6Y7W6 1299 aaKnown RBP10.13□□□□□ -0.79
CD44-211ENST00000442151 NLRP3Q96P20 1036 aa10.13□□□□□ -0.79
CD44-211ENST00000442151 FAM177BA6PVY3 158 aa10.12□□□□□ -0.79
CD44-211ENST00000442151 HSP90B1P14625 803 aaKnown RBP10.12□□□□□ -0.79
CD44-211ENST00000442151 EIF2S2P20042 333 aaKnown RBP10.12□□□□□ -0.79
CD44-211ENST00000442151 HLFQ16534 295 aa10.12□□□□□ -0.79
CD44-211ENST00000442151 CCDC24Q8N4L8 307 aa10.12□□□□□ -0.79
CD44-211ENST00000442151 JDP2Q8WYK2 163 aa10.12□□□□□ -0.79
CD44-211ENST00000442151 VPS33BQ9H267 617 aa10.12□□□□□ -0.79
CD44-211ENST00000442151 SBF1O95248 1867 aa10.12□□□□□ -0.79
CD44-211ENST00000442151 HOXB7P09629 217 aa10.12□□□□□ -0.79
CD44-211ENST00000442151 CRAMP1Q96RY5 1269 aa10.12□□□□□ -0.79
CD44-211ENST00000442151 UTP14AQ9BVJ6 771 aaKnown RBP10.12□□□□□ -0.79
CD44-211ENST00000442151 TNRC6CQ9HCJ0 1690 aaKnown RBP10.11□□□□□ -0.79
CD44-211ENST00000442151 HOXA10P31260 410 aaPredicted RBP10.11□□□□□ -0.79
CD44-211ENST00000442151 ZNF34Q8IZ26 560 aa10.11□□□□□ -0.79
CD44-211ENST00000442151 SUPT20HQ8NEM7 779 aa10.11□□□□□ -0.79
CD44-211ENST00000442151 BCORQ6W2J9 1755 aa10.11□□□□□ -0.79
CD44-211ENST00000442151 EIF6P56537 245 aaKnown RBP10.1□□□□□ -0.79
CD44-211ENST00000442151 NEUROD2Q15784 382 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 DOK7Q18PE1 504 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms