RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 UTYO14607 1347 aa26■■□□□ 1.75
CHD3-204ENST00000439235 PNPLA7Q6ZV29 1317 aa26■■□□□ 1.75
CHD3-204ENST00000439235 GPTP24298 496 aa26■■□□□ 1.75
CHD3-204ENST00000439235 NLRP10Q86W26 655 aa26■■□□□ 1.75
CHD3-204ENST00000439235 BCL2L12Q9HB09 334 aa26■■□□□ 1.75
CHD3-204ENST00000439235 PPP4R2Q9NY27 417 aa26■■□□□ 1.75
CHD3-204ENST00000439235 GNAI2P04899 355 aa25.99■■□□□ 1.75
CHD3-204ENST00000439235 NIP7Q9Y221 180 aaKnown RBP eCLIP25.99■■□□□ 1.75
CHD3-204ENST00000439235 UBN2Q6ZU65 1347 aa25.97■■□□□ 1.75
CHD3-204ENST00000439235 MSH5O43196 834 aa25.97■■□□□ 1.75
CHD3-204ENST00000439235 NBPF7P0C2Y1 421 aaPredicted RBP25.97■■□□□ 1.75
CHD3-204ENST00000439235 COL23A1Q86Y22 540 aaPredicted RBP25.97■■□□□ 1.75
CHD3-204ENST00000439235 PPP1R42Q7Z4L9 355 aa25.96■■□□□ 1.75
CHD3-204ENST00000439235 H7C1W4 665 aa25.95■■□□□ 1.74
CHD3-204ENST00000439235 PCCAP05165 728 aaPredicted RBP25.95■■□□□ 1.74
CHD3-204ENST00000439235 GYS1P13807 737 aa25.95■■□□□ 1.74
CHD3-204ENST00000439235 TBC1D9BQ66K14 1250 aa25.95■■□□□ 1.74
CHD3-204ENST00000439235 UBE3BQ7Z3V4 1068 aa25.95■■□□□ 1.74
CHD3-204ENST00000439235 C1orf115Q9H7X2 142 aa25.95■■□□□ 1.74
CHD3-204ENST00000439235 ZBTB38Q8NAP3 1195 aaPredicted RBP25.94■■□□□ 1.74
CHD3-204ENST00000439235 SETDB2Q96T68 719 aa25.94■■□□□ 1.74
CHD3-204ENST00000439235 UTP14AQ9BVJ6 771 aaKnown RBP25.94■■□□□ 1.74
CHD3-204ENST00000439235 BICDL1Q6ZP65 573 aa25.93■■□□□ 1.74
CHD3-204ENST00000439235 TRMT112Q9UI30 125 aaKnown RBP25.93■■□□□ 1.74
CHD3-204ENST00000439235 LRRFIP2Q9Y608 721 aaKnown RBP25.93■■□□□ 1.74
CHD3-204ENST00000439235 SUSD4Q5VX71 490 aa25.92■■□□□ 1.74
CHD3-204ENST00000439235 CCDC136Q96JN2 1154 aa25.92■■□□□ 1.74
CHD3-204ENST00000439235 CARMIL3Q8ND23 1372 aa25.92■■□□□ 1.74
CHD3-204ENST00000439235 COL24A1Q17RW2 1714 aa25.91■■□□□ 1.74
CHD3-204ENST00000439235 CDHR2Q9BYE9 1310 aa25.91■■□□□ 1.74
CHD3-204ENST00000439235 CASP7P55210 303 aa25.91■■□□□ 1.74
CHD3-204ENST00000439235 NLGN1Q8N2Q7 840 aa25.91■■□□□ 1.74
CHD3-204ENST00000439235 SUCLG2Q96I99 432 aa25.91■■□□□ 1.74
CHD3-204ENST00000439235 NYXQ9GZU5 481 aa25.91■■□□□ 1.74
CHD3-204ENST00000439235 PCDHB15Q9Y5E8 787 aa25.91■■□□□ 1.74
CHD3-204ENST00000439235 SH3TC1Q8TE82 1336 aa25.9■■□□□ 1.74
CHD3-204ENST00000439235 NTSR2O95665 410 aa25.9■■□□□ 1.74
CHD3-204ENST00000439235 NFIXQ14938 502 aa25.9■■□□□ 1.74
CHD3-204ENST00000439235 RPAP2Q8IXW5 612 aaPredicted RBP25.9■■□□□ 1.74
CHD3-204ENST00000439235 HSP90B1P14625 803 aaKnown RBP25.89■■□□□ 1.74
CHD3-204ENST00000439235 CEP85Q6P2H3 762 aa25.89■■□□□ 1.74
CHD3-204ENST00000439235 FAM89AQ96GI7 184 aa25.89■■□□□ 1.74
CHD3-204ENST00000439235 RTL5Q5HYW3 569 aaPredicted RBP25.88■■□□□ 1.73
CHD3-204ENST00000439235 ANKRD44Q8N8A2 993 aa25.88■■□□□ 1.73
CHD3-204ENST00000439235 JARID2Q92833 1246 aaPredicted RBP25.88■■□□□ 1.73
CHD3-204ENST00000439235 FAM177BA6PVY3 158 aa25.87■■□□□ 1.73
CHD3-204ENST00000439235 NBPF5PQ86XG9 351 aaPredicted RBP25.87■■□□□ 1.73
CHD3-204ENST00000439235 HMMRO75330 724 aa25.86■■□□□ 1.73
CHD3-204ENST00000439235 PLA2G12BQ9BX93 195 aa25.86■■□□□ 1.73
CHD3-204ENST00000439235 RWDD1Q9H446 243 aaPredicted RBP25.86■■□□□ 1.73
CHD3-204ENST00000439235 BICC1Q9H694 974 aaKnown RBP25.86■■□□□ 1.73
CHD3-204ENST00000439235 IRS4O14654 1257 aaPredicted RBP25.85■■□□□ 1.73
CHD3-204ENST00000439235 TM4SF1P30408 202 aa25.85■■□□□ 1.73
CHD3-204ENST00000439235 HDAC1Q13547 482 aaPredicted RBP25.85■■□□□ 1.73
CHD3-204ENST00000439235 B4GALNT3Q6L9W6 998 aa25.85■■□□□ 1.73
CHD3-204ENST00000439235 TPTE2Q6XPS3 522 aa25.85■■□□□ 1.73
CHD3-204ENST00000439235 GTF2E1P29083 439 aaPredicted RBP25.84■■□□□ 1.73
CHD3-204ENST00000439235 ATP8B2P98198 1209 aa25.84■■□□□ 1.73
CHD3-204ENST00000439235 MTX1Q13505 466 aa25.84■■□□□ 1.73
CHD3-204ENST00000439235 SLC16A10Q8TF71 515 aa25.84■■□□□ 1.73
CHD3-204ENST00000439235 KAZALD1Q96I82 304 aa25.84■■□□□ 1.73
CHD3-204ENST00000439235 NPHP1O15259 732 aa25.83■■□□□ 1.73
CHD3-204ENST00000439235 RABL6Q3YEC7 729 aaPredicted RBP25.83■■□□□ 1.73
CHD3-204ENST00000439235 PDE8AO60658 829 aa25.82■■□□□ 1.72
CHD3-204ENST00000439235 NUTM1Q86Y26 1132 aa25.82■■□□□ 1.72
CHD3-204ENST00000439235 CNBD1Q8NA66 436 aa25.82■■□□□ 1.72
CHD3-204ENST00000439235 LAMB2P55268 1798 aa25.82■■□□□ 1.72
CHD3-204ENST00000439235 POLRMTO00411 1230 aaKnown RBP25.81■■□□□ 1.72
CHD3-204ENST00000439235 SERPINB2P05120 415 aa25.81■■□□□ 1.72
CHD3-204ENST00000439235 FOXO4P98177 505 aa25.81■■□□□ 1.72
CHD3-204ENST00000439235 EPHA10Q5JZY3 1008 aa25.81■■□□□ 1.72
CHD3-204ENST00000439235 SIRT2Q8IXJ6 389 aa25.81■■□□□ 1.72
CHD3-204ENST00000439235 SRGAP3O43295 1099 aa25.8■■□□□ 1.72
CHD3-204ENST00000439235 DDR1Q08345 913 aa25.8■■□□□ 1.72
CHD3-204ENST00000439235 ERFEQ4G0M1 354 aa25.8■■□□□ 1.72
CHD3-204ENST00000439235 MSL1Q68DK7 614 aa25.8■■□□□ 1.72
CHD3-204ENST00000439235 SYNE4Q8N205 404 aa25.8■■□□□ 1.72
CHD3-204ENST00000439235 PNMA6EA0A0J9YXQ4 647 aa25.79■■□□□ 1.72
CHD3-204ENST00000439235 MMP10P09238 476 aa25.79■■□□□ 1.72
CHD3-204ENST00000439235 CTSWP56202 376 aa25.79■■□□□ 1.72
CHD3-204ENST00000439235 LMBR1LQ6UX01 489 aa25.79■■□□□ 1.72
CHD3-204ENST00000439235 CENPQQ7L2Z9 268 aaPredicted RBP25.79■■□□□ 1.72
CHD3-204ENST00000439235 PARP3Q9Y6F1 533 aa25.79■■□□□ 1.72
CHD3-204ENST00000439235 ABCC12Q96J65 1359 aa25.79■■□□□ 1.72
CHD3-204ENST00000439235 RIC1Q4ADV7 1423 aa25.79■■□□□ 1.72
CHD3-204ENST00000439235 IGHDP01880 384 aa25.78■■□□□ 1.72
CHD3-204ENST00000439235 ST5P78524 1137 aa25.78■■□□□ 1.72
CHD3-204ENST00000439235 SLC10A5Q5PT55 438 aa25.78■■□□□ 1.72
CHD3-204ENST00000439235 SSH3Q8TE77 659 aa25.78■■□□□ 1.72
CHD3-204ENST00000439235 HCLS1P14317 486 aaPredicted RBP25.77■■□□□ 1.72
CHD3-204ENST00000439235 POLA2Q14181 598 aa25.77■■□□□ 1.72
CHD3-204ENST00000439235 R3HDM1Q15032 1099 aaKnown RBP25.77■■□□□ 1.72
CHD3-204ENST00000439235 CHMP3Q9Y3E7 222 aa25.77■■□□□ 1.72
CHD3-204ENST00000439235 DDX60Q8IY21 1712 aaKnown RBP25.77■■□□□ 1.72
CHD3-204ENST00000439235 CASZ1Q86V15 1759 aa25.77■■□□□ 1.72
CHD3-204ENST00000439235 CSF1RP07333 972 aa25.76■■□□□ 1.71
CHD3-204ENST00000439235 PRR5LQ6MZQ0 368 aa25.76■■□□□ 1.71
CHD3-204ENST00000439235 KDM2BQ8NHM5 1336 aa25.76■■□□□ 1.71
CHD3-204ENST00000439235 PDGFDQ9GZP0 370 aaPredicted RBP25.75■■□□□ 1.71
CHD3-204ENST00000439235 TTLL11Q8NHH1 800 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms