RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 HECW2Q9P2P5 1572 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 TFIP11Q9UBB9 837 aaKnown RBP14.43□□□□□ -0.1
TCOF1-205ENST00000439160 BRPF1P55201 1214 aaPredicted RBP14.43□□□□□ -0.1
TCOF1-205ENST00000439160 CCDC152Q4G0S7 254 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 CDK5RAP3Q96JB5 506 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 KCNQ3O43525 872 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 A1BGP04217 495 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 GJB2P29033 226 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 CCDC173Q0VFZ6 552 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 KDM2BQ8NHM5 1336 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 LMTK3Q96Q04 1460 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 TTF1Q15361 905 aaPredicted RBP14.43□□□□□ -0.1
TCOF1-205ENST00000439160 BRF1Q92994 677 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 PLEKHF1Q96S99 279 aa14.43□□□□□ -0.1
TCOF1-205ENST00000439160 PDIA4P13667 645 aaKnown RBP14.42□□□□□ -0.1
TCOF1-205ENST00000439160 FAM89AQ96GI7 184 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 BABAM1Q9NWV8 329 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 PNMA6EA0A0J9YXQ4 647 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 TFCP2Q12800 502 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 SLC52A2Q9HAB3 445 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 R3HCC1Q9Y3T6 440 aaKnown RBP14.42□□□□□ -0.1
TCOF1-205ENST00000439160 CCDC144CPQ8IYA2 1237 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 NOL7Q9UMY1 257 aaKnown RBP14.42□□□□□ -0.1
TCOF1-205ENST00000439160 SLC12A7Q9Y666 1083 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 PLEKHG1Q9ULL1 1385 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 STX6O43752 255 aa14.42□□□□□ -0.1
TCOF1-205ENST00000439160 EIF4A1P60842 406 aaKnown RBP14.41□□□□□ -0.1
TCOF1-205ENST00000439160 SLC4A8Q2Y0W8 1093 aa14.41□□□□□ -0.1
TCOF1-205ENST00000439160 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-205ENST00000439160 IQCA1Q86XH1 822 aa14.41□□□□□ -0.1
TCOF1-205ENST00000439160 WASF1Q92558 559 aa14.41□□□□□ -0.1
TCOF1-205ENST00000439160 BAG4O95429 457 aaKnown RBP14.41□□□□□ -0.1
TCOF1-205ENST00000439160 HOXB7P09629 217 aa14.41□□□□□ -0.1
TCOF1-205ENST00000439160 MICU3Q86XE3 530 aa14.41□□□□□ -0.1
TCOF1-205ENST00000439160 SCAND2PQ9GZW5 306 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-205ENST00000439160 IRS4O14654 1257 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-205ENST00000439160 NMIQ13287 307 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-205ENST00000439160 SMARCC1Q92922 1105 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-205ENST00000439160 SETDB2Q96T68 719 aa14.41□□□□□ -0.1
TCOF1-205ENST00000439160 ABCC3O15438 1527 aa14.41□□□□□ -0.1
TCOF1-205ENST00000439160 HMGN5P82970 282 aaKnown RBP14.4□□□□□ -0.1
TCOF1-205ENST00000439160 USP16Q9Y5T5 823 aa14.4□□□□□ -0.1
TCOF1-205ENST00000439160 ANKRD18AQ8IVF6 992 aa14.4□□□□□ -0.1
TCOF1-205ENST00000439160 HMG20BQ9P0W2 317 aa14.4□□□□□ -0.1
TCOF1-205ENST00000439160 ARHGEF10O15013 1369 aa14.4□□□□□ -0.1
TCOF1-205ENST00000439160 SERPINC1P01008 464 aa14.4□□□□□ -0.1
TCOF1-205ENST00000439160 CHMLP26374 656 aa14.4□□□□□ -0.1
TCOF1-205ENST00000439160 MAP3K11Q16584 847 aa14.4□□□□□ -0.1
TCOF1-205ENST00000439160 SLC9C2Q5TAH2 1124 aa14.4□□□□□ -0.1
TCOF1-205ENST00000439160 TTC41PQ6P2S7 1318 aa14.39□□□□□ -0.11
TCOF1-205ENST00000439160 MPHOSPH10O00566 681 aaKnown RBP14.39□□□□□ -0.11
TCOF1-205ENST00000439160 UQCRFS1P1P0C7P4 283 aa14.39□□□□□ -0.11
TCOF1-205ENST00000439160 TIMM10P62072 90 aa14.39□□□□□ -0.11
TCOF1-205ENST00000439160 MCMDC2Q4G0Z9 681 aa14.39□□□□□ -0.11
TCOF1-205ENST00000439160 CTCFLQ8NI51 663 aaPredicted RBP14.39□□□□□ -0.11
TCOF1-205ENST00000439160 NLRP3Q96P20 1036 aa14.39□□□□□ -0.11
TCOF1-205ENST00000439160 RNF41Q9H4P4 317 aaPredicted RBP14.39□□□□□ -0.11
TCOF1-205ENST00000439160 CCDC196A0A1B0GTZ2 297 aa14.39□□□□□ -0.11
TCOF1-205ENST00000439160 GOLGA8AA7E2F4 631 aa14.39□□□□□ -0.11
TCOF1-205ENST00000439160 METTL22Q9BUU2 404 aaPredicted RBP14.39□□□□□ -0.11
TCOF1-205ENST00000439160 UTP14AQ9BVJ6 771 aaKnown RBP14.39□□□□□ -0.11
TCOF1-205ENST00000439160 PAG1Q9NWQ8 432 aa14.39□□□□□ -0.11
TCOF1-205ENST00000439160 TMEM67Q5HYA8 995 aa14.38□□□□□ -0.11
TCOF1-205ENST00000439160 KRT18P05783 430 aaKnown RBP14.38□□□□□ -0.11
TCOF1-205ENST00000439160 ZNF444Q8N0Y2 327 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-205ENST00000439160 TMEM94Q12767 1356 aa14.38□□□□□ -0.11
TCOF1-205ENST00000439160 ANAPC15P60006 121 aa14.38□□□□□ -0.11
TCOF1-205ENST00000439160 CEP57L1Q8IYX8 460 aa14.38□□□□□ -0.11
TCOF1-205ENST00000439160 PLBD2Q8NHP8 589 aa14.38□□□□□ -0.11
TCOF1-205ENST00000439160 NCOA7Q8NI08 942 aa14.38□□□□□ -0.11
TCOF1-205ENST00000439160 ZNF287Q9HBT7 754 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 ORC3Q9UBD5 711 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-205ENST00000439160 PRIM1P49642 420 aaKnown RBP14.37□□□□□ -0.11
TCOF1-205ENST00000439160 TTLL5Q6EMB2 1281 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 DNAJC10Q8IXB1 793 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 CRACR2BQ8N4Y2 399 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-205ENST00000439160 ZHX3Q9H4I2 956 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 ADCY10Q96PN6 1610 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 ZFYP08048 801 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-205ENST00000439160 HMGB2P26583 209 aaKnown RBP14.37□□□□□ -0.11
TCOF1-205ENST00000439160 MFSD6Q6ZSS7 791 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 FAM135BQ49AJ0 1406 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 KIF1BO60333 1816 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 A0A0U1RQG5 324 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-205ENST00000439160 FILIP1Q7Z7B0 1213 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 CKAP2LQ8IYA6 745 aa14.37□□□□□ -0.11
TCOF1-205ENST00000439160 TRMT2AQ8IZ69 625 aaKnown RBP14.37□□□□□ -0.11
TCOF1-205ENST00000439160 ZNF521Q96K83 1311 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 SSBP05455 408 aaKnown RBP eCLIP14.36□□□□□ -0.11
TCOF1-205ENST00000439160 FILIP1LQ4L180 1135 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 TMOD2Q9NZR1 351 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 NLRP1Q9C000 1473 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 ESPNB1AK53 854 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 GIGYF1O75420 1035 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-205ENST00000439160 CYP7A1P22680 504 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 EPS15P42566 896 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 SUCLG2Q96I99 432 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 KIAA0232Q92628 1395 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 OFD1O75665 1012 aa14.36□□□□□ -0.11
TCOF1-205ENST00000439160 NAP1L1P55209 391 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms