RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 PIGBQ92521 554 aa11.52□□□□□ -0.57
CUX1-206ENST00000437600 GDPD2Q9HCC8 539 aa11.52□□□□□ -0.57
CUX1-206ENST00000437600 KCNQ4P56696 695 aa11.51□□□□□ -0.57
CUX1-206ENST00000437600 VPS72Q15906 364 aa11.51□□□□□ -0.57
CUX1-206ENST00000437600 QTRT2Q9H974 415 aaKnown RBP11.51□□□□□ -0.57
CUX1-206ENST00000437600 TMOD3Q9NYL9 352 aa11.51□□□□□ -0.57
CUX1-206ENST00000437600 RBM27Q9P2N5 1060 aaKnown RBP11.51□□□□□ -0.57
CUX1-206ENST00000437600 CACNA1FO60840 1977 aa11.51□□□□□ -0.57
CUX1-206ENST00000437600 COL9A3Q14050 684 aaPredicted RBP11.51□□□□□ -0.57
CUX1-206ENST00000437600 SUCLG2Q96I99 432 aa11.51□□□□□ -0.57
CUX1-206ENST00000437600 C5P01031 1676 aa11.51□□□□□ -0.57
CUX1-206ENST00000437600 ADAMTS7Q9UKP4 1686 aa11.51□□□□□ -0.57
CUX1-206ENST00000437600 DDX58O95786 925 aaKnown RBP11.5□□□□□ -0.57
CUX1-206ENST00000437600 CHGBP05060 677 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 GLIPR1L2Q4G1C9 344 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 CAVIN1Q6NZI2 390 aaKnown RBP11.5□□□□□ -0.57
CUX1-206ENST00000437600 ANKRD13DQ6ZTN6 518 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 RASEFQ8IZ41 740 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 PI4K2BQ8TCG2 481 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 GJD4Q96KN9 370 aaPredicted RBP11.5□□□□□ -0.57
CUX1-206ENST00000437600 BICC1Q9H694 974 aaKnown RBP11.5□□□□□ -0.57
CUX1-206ENST00000437600 RRAGDQ9NQL2 400 aaPredicted RBP11.5□□□□□ -0.57
CUX1-206ENST00000437600 NSFL1CQ9UNZ2 370 aaKnown RBP11.5□□□□□ -0.57
CUX1-206ENST00000437600 NBPF26B4DH59 902 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 NBPF14Q5TI25 921 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 NBPF10Q6P3W6 841 aaKnown RBP11.5□□□□□ -0.57
CUX1-206ENST00000437600 TTLL7Q6ZT98 887 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 NBPF15Q8N660 670 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 EDC3Q96F86 508 aaKnown RBP11.5□□□□□ -0.57
CUX1-206ENST00000437600 KAZALD1Q96I82 304 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 ZBTB3Q9H5J0 574 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 DOT1LQ8TEK3 1739 aa11.5□□□□□ -0.57
CUX1-206ENST00000437600 TNS2Q63HR2 1409 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 FSD2A1L4K1 749 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 GRM8O00222 908 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 GRPEL1Q9HAV7 217 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 TLR7Q9NYK1 1049 aaKnown RBP11.49□□□□□ -0.57
CUX1-206ENST00000437600 CIZ1Q9ULV3 898 aaPredicted RBP11.49□□□□□ -0.57
CUX1-206ENST00000437600 GLI3P10071 1580 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 POLA2Q14181 598 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 EPHA10Q5JZY3 1008 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 LINS1Q8NG48 757 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 KIF1BPQ96EK5 621 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 L1TD1Q5T7N2 865 aaKnown RBP11.49□□□□□ -0.57
CUX1-206ENST00000437600 UBE3BQ7Z3V4 1068 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 AACSQ86V21 672 aa11.49□□□□□ -0.57
CUX1-206ENST00000437600 NEXNQ0ZGT2 675 aa11.48□□□□□ -0.57
CUX1-206ENST00000437600 NKX1-1Q15270 411 aaPredicted RBP11.48□□□□□ -0.57
CUX1-206ENST00000437600 VSIG10Q8N0Z9 540 aa11.48□□□□□ -0.57
CUX1-206ENST00000437600 CHMP4AQ9BY43 222 aa11.48□□□□□ -0.57
CUX1-206ENST00000437600 BOLA2Q9H3K6 86 aa11.48□□□□□ -0.57
CUX1-206ENST00000437600 STAP2Q9UGK3 403 aa11.48□□□□□ -0.57
CUX1-206ENST00000437600 NEURL1BA8MQ27 555 aa11.48□□□□□ -0.57
CUX1-206ENST00000437600 RBM10P98175 930 aaKnown RBP11.48□□□□□ -0.57
CUX1-206ENST00000437600 LRP10Q7Z4F1 713 aa11.48□□□□□ -0.57
CUX1-206ENST00000437600 TCEANC2Q96MN5 208 aa11.48□□□□□ -0.57
CUX1-206ENST00000437600 THRAP3Q9Y2W1 955 aaKnown RBP11.48□□□□□ -0.57
CUX1-206ENST00000437600 PTH1RQ03431 593 aa11.47□□□□□ -0.57
CUX1-206ENST00000437600 BARGINQ6ZT62 677 aa11.47□□□□□ -0.57
CUX1-206ENST00000437600 CLASRPQ8N2M8 674 aaKnown RBP11.47□□□□□ -0.57
CUX1-206ENST00000437600 ERVV-2B6SEH9 535 aa11.47□□□□□ -0.57
CUX1-206ENST00000437600 EAF2Q96CJ1 260 aaPredicted RBP11.47□□□□□ -0.57
CUX1-206ENST00000437600 ATG3Q9NT62 314 aa11.47□□□□□ -0.57
CUX1-206ENST00000437600 PXDNLA1KZ92 1463 aa11.47□□□□□ -0.57
CUX1-206ENST00000437600 GOLGA6L22H0YM25 854 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 SASH1O94885 1247 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 IFIT2P09913 472 aaKnown RBP11.46□□□□□ -0.57
CUX1-206ENST00000437600 GCKRQ14397 625 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 SEPT12Q8IYM1 358 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 CHMP3Q9Y3E7 222 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 ALDH1L1O75891 902 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 ADCK5Q3MIX3 580 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 DNAJC10Q8IXB1 793 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 FAM227BQ96M60 508 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 METTL22Q9BUU2 404 aaPredicted RBP11.46□□□□□ -0.57
CUX1-206ENST00000437600 LMBRD1Q9NUN5 540 aa11.46□□□□□ -0.57
CUX1-206ENST00000437600 TRPC5Q9UL62 973 aaPredicted RBP11.46□□□□□ -0.57
CUX1-206ENST00000437600 A0A087WZG4 1122 aa11.46□□□□□ -0.58
CUX1-206ENST00000437600 SLC4A9Q96Q91 983 aa11.46□□□□□ -0.58
CUX1-206ENST00000437600 MRC1P22897 1456 aa11.45□□□□□ -0.58
CUX1-206ENST00000437600 RAB11FIP3O75154 756 aa11.45□□□□□ -0.58
CUX1-206ENST00000437600 SMIM5Q71RC9 77 aa11.45□□□□□ -0.58
CUX1-206ENST00000437600 CCDC85AQ96PX6 553 aaPredicted RBP11.45□□□□□ -0.58
CUX1-206ENST00000437600 MCCP23508 829 aa11.45□□□□□ -0.58
CUX1-206ENST00000437600 NUCB2P80303 420 aa11.45□□□□□ -0.58
CUX1-206ENST00000437600 SLFNL1Q499Z3 407 aa11.45□□□□□ -0.58
CUX1-206ENST00000437600 PRPF40BQ6NWY9 871 aaKnown RBP11.45□□□□□ -0.58
CUX1-206ENST00000437600 GPT2Q8TD30 523 aa11.45□□□□□ -0.58
CUX1-206ENST00000437600 SGSM2O43147 1006 aa11.44□□□□□ -0.58
CUX1-206ENST00000437600 MRE11P49959 708 aa11.44□□□□□ -0.58
CUX1-206ENST00000437600 G3BP1Q13283 466 aaKnown RBP eCLIP11.44□□□□□ -0.58
CUX1-206ENST00000437600 KIAA1211Q6ZU35 1233 aa11.44□□□□□ -0.58
CUX1-206ENST00000437600 CNTROBQ8N137 903 aa11.44□□□□□ -0.58
CUX1-206ENST00000437600 DIAPH3Q9NSV4 1193 aa11.44□□□□□ -0.58
CUX1-206ENST00000437600 SNX14Q9Y5W7 946 aa11.44□□□□□ -0.58
CUX1-206ENST00000437600 TAF6LQ9Y6J9 622 aa11.44□□□□□ -0.58
CUX1-206ENST00000437600 BRWD3Q6RI45 1802 aa11.44□□□□□ -0.58
CUX1-206ENST00000437600 CYP2E1P05181 493 aaPredicted RBP11.44□□□□□ -0.58
CUX1-206ENST00000437600 CASTP20810 708 aaKnown RBP11.44□□□□□ -0.58
CUX1-206ENST00000437600 BCL9O00512 1426 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms