RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 SPATA21Q7Z572 469 aa7.59□□□□□ -1.2
MCF2-205ENST00000437564 DDX11Q96FC9 970 aa7.59□□□□□ -1.2
MCF2-205ENST00000437564 EIF3CQ99613 913 aaKnown RBP7.59□□□□□ -1.2
MCF2-205ENST00000437564 THUMPD2Q9BTF0 503 aaKnown RBP7.59□□□□□ -1.2
MCF2-205ENST00000437564 YIPF2Q9BWQ6 316 aa7.59□□□□□ -1.2
MCF2-205ENST00000437564 SPATA7Q9P0W8 599 aa7.59□□□□□ -1.2
MCF2-205ENST00000437564 MKRN1Q9UHC7 482 aaKnown RBP7.59□□□□□ -1.2
MCF2-205ENST00000437564 NF2P35240 595 aa7.58□□□□□ -1.2
MCF2-205ENST00000437564 IQCB1Q15051 598 aa7.58□□□□□ -1.2
MCF2-205ENST00000437564 CTCFLQ8NI51 663 aaPredicted RBP7.58□□□□□ -1.2
MCF2-205ENST00000437564 RSPH1Q8WYR4 309 aa7.58□□□□□ -1.2
MCF2-205ENST00000437564 SNX21Q969T3 373 aa7.58□□□□□ -1.2
MCF2-205ENST00000437564 FAM117AQ9C073 453 aa7.58□□□□□ -1.2
MCF2-205ENST00000437564 MCM8Q9UJA3 840 aa7.58□□□□□ -1.2
MCF2-205ENST00000437564 TMEM98Q9Y2Y6 226 aa7.58□□□□□ -1.2
MCF2-205ENST00000437564 CEP164Q9UPV0 1460 aa7.58□□□□□ -1.2
MCF2-205ENST00000437564 RTN2O75298 545 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 RTN3O95197 1032 aaPredicted RBP7.57□□□□□ -1.2
MCF2-205ENST00000437564 BDNFP23560 247 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 POU5F1Q01860 360 aaKnown RBP7.57□□□□□ -1.2
MCF2-205ENST00000437564 DDR1Q08345 913 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 KRT72Q14CN4 511 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 INF2Q27J81 1249 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 SFMBT2Q5VUG0 894 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 EXOC4Q96A65 974 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 CLIP2Q9UDT6 1046 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 NCOA3Q9Y6Q9 1424 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 GOLGA6L19H0YKK7 550 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 AP1G2O75843 785 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 ACTN2P35609 894 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 CCNHP51946 323 aaPredicted RBP7.57□□□□□ -1.2
MCF2-205ENST00000437564 CCDC70Q6NSX1 233 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 HSCBQ8IWL3 235 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 MRFAP1L1Q96HT8 127 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 DHRS1Q96LJ7 313 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 FAM81BQ96LP2 452 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 RSPH9Q9H1X1 276 aaPredicted RBP7.57□□□□□ -1.2
MCF2-205ENST00000437564 MRS2Q9HD23 443 aa7.57□□□□□ -1.2
MCF2-205ENST00000437564 MAP4K4O95819 1239 aaPredicted RBP7.56□□□□□ -1.2
MCF2-205ENST00000437564 MYL1P05976 194 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 YY1P25490 414 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 DDIT3P35638 169 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 RAB27AP51159 221 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 POSTNQ15063 836 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 TADA2BQ86TJ2 420 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 FAM114A1Q8IWE2 563 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 WDR63Q8IWG1 891 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 NEK11Q8NG66 645 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 PMFBP1Q8TBY8 1022 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 TBC1D5Q92609 795 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 TBC1D32Q96NH3 1257 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 IRX2Q9BZI1 471 aaPredicted RBP7.56□□□□□ -1.2
MCF2-205ENST00000437564 NLRP1Q9C000 1473 aa7.56□□□□□ -1.2
MCF2-205ENST00000437564 ROCK1Q13464 1354 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 FAM177BA6PVY3 158 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 SLC27A2O14975 620 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 MAP3K13O43283 966 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 OPA1O60313 960 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 IGHDP01880 384 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 NAT2P11245 290 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 PKN1Q16512 942 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 MICALCLQ6ZW33 695 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 CDC37L1Q7L3B6 337 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 VPS37AQ8NEZ2 397 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 EZH1Q92800 747 aaPredicted RBP7.55□□□□□ -1.2
MCF2-205ENST00000437564 CCDC47Q96A33 483 aaKnown RBP7.55□□□□□ -1.2
MCF2-205ENST00000437564 SEZ6LQ9BYH1 1024 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 NACA2Q9H009 215 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 ITM2BQ9Y287 266 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 NCOA2Q15596 1464 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 PTPRCP08575 1304 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 PDLIM1O00151 329 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 HOXA10P31260 410 aaPredicted RBP7.55□□□□□ -1.2
MCF2-205ENST00000437564 SLC7A5Q01650 507 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 PDE3BQ13370 1112 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 RAB3GAP1Q15042 981 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 KBTBD12Q3ZCT8 623 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 PREPLQ4J6C6 727 aaPredicted RBP7.55□□□□□ -1.2
MCF2-205ENST00000437564 CCDC184Q52MB2 194 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 LARP1BQ659C4 914 aaKnown RBP7.55□□□□□ -1.2
MCF2-205ENST00000437564 CCDC65Q8IXS2 484 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 PRPF38AQ8NAV1 312 aaKnown RBP7.55□□□□□ -1.2
MCF2-205ENST00000437564 C3orf20Q8ND61 904 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 FAM81AQ8TBF8 368 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 TAF4BQ92750 862 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 RBM17Q96I25 401 aaKnown RBP7.55□□□□□ -1.2
MCF2-205ENST00000437564 STK31Q9BXU1 1019 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 RBSNQ9H1K0 784 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 RCAN3Q9UKA8 241 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 MYO6Q9UM54 1294 aa7.55□□□□□ -1.2
MCF2-205ENST00000437564 MAPK8IP3Q9UPT6 1336 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 PLEKHG3A1L390 1219 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 CFAP69A5D8W1 941 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 GOLGA6L10A6NI86 522 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 FOSL1P15407 271 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 GCKP35557 465 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 KIAA0753Q2KHM9 967 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 KMT5BQ4FZB7 885 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 SEPT14Q6ZU15 432 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 FAM76AQ8TAV0 307 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms