RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 DUSP27Q5VZP5 1158 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 MRVI1Q9Y6F6 885 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 SNAPC4Q5SXM2 1469 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 IBSPP21815 317 aaPredicted RBP8.22□□□□□ -1.09
VPS53-204ENST00000437048 GBP7Q8N8V2 638 aaPredicted RBP8.22□□□□□ -1.09
VPS53-204ENST00000437048 PLCB1Q9NQ66 1216 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 STK24Q9Y6E0 443 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 GOLGA8QA0A0J9YX86 632 aa8.21□□□□□ -1.09
VPS53-204ENST00000437048 GOLGA8OA6NCC3 632 aa8.21□□□□□ -1.09
VPS53-204ENST00000437048 GOLGA8NF8WBI6 632 aa8.21□□□□□ -1.09
VPS53-204ENST00000437048 DEUP1Q05D60 604 aa8.21□□□□□ -1.09
VPS53-204ENST00000437048 SKIDA1Q1XH10 827 aa8.21□□□□□ -1.09
VPS53-204ENST00000437048 CWC25Q9NXE8 425 aaPredicted RBP8.21□□□□□ -1.09
VPS53-204ENST00000437048 MX1P20591 662 aa8.21□□□□□ -1.09
VPS53-204ENST00000437048 TNNC1P63316 161 aa8.21□□□□□ -1.09
VPS53-204ENST00000437048 SKILP12757 684 aa8.21□□□□□ -1.09
VPS53-204ENST00000437048 HDAC1Q13547 482 aaPredicted RBP8.21□□□□□ -1.09
VPS53-204ENST00000437048 ELL2O00472 640 aaPredicted RBP8.21□□□□□ -1.1
VPS53-204ENST00000437048 TAF7Q15545 349 aaPredicted RBP8.21□□□□□ -1.1
VPS53-204ENST00000437048 GPR161Q8N6U8 529 aaKnown RBP8.21□□□□□ -1.1
VPS53-204ENST00000437048 TSPYL4Q9UJ04 414 aa8.21□□□□□ -1.1
VPS53-204ENST00000437048 NUP160Q12769 1436 aa8.21□□□□□ -1.1
VPS53-204ENST00000437048 TOP2BQ02880 1626 aa8.21□□□□□ -1.1
VPS53-204ENST00000437048 TAOK1Q7L7X3 1001 aa8.21□□□□□ -1.1
VPS53-204ENST00000437048 STMN2Q93045 179 aa8.21□□□□□ -1.1
VPS53-204ENST00000437048 ERBINQ96RT1 1412 aa8.21□□□□□ -1.1
VPS53-204ENST00000437048 C16orf45Q96MC5 204 aaPredicted RBP8.21□□□□□ -1.1
VPS53-204ENST00000437048 NUCKS1Q9H1E3 243 aaKnown RBP8.21□□□□□ -1.1
VPS53-204ENST00000437048 CASQ2O14958 399 aaPredicted RBP8.2□□□□□ -1.1
VPS53-204ENST00000437048 ZNF853P0CG23 659 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 TBC1D32Q96NH3 1257 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 SYNJ2O15056 1496 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 FGD5Q6ZNL6 1462 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 WASHC4Q2M389 1173 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 VWA3BQ502W6 1294 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 RPAINQ86UA6 219 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 PPP1R12CQ9BZL4 782 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 LARP1Q6PKG0 1096 aaKnown RBP8.2□□□□□ -1.1
VPS53-204ENST00000437048 ZMAT2Q96NC0 199 aaKnown RBP8.2□□□□□ -1.1
VPS53-204ENST00000437048 PIBF1Q8WXW3 757 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 RAB3IPQ96QF0 476 aaPredicted RBP8.2□□□□□ -1.1
VPS53-204ENST00000437048 AP1ARQ63HQ0 302 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 AFAP1L2Q8N4X5 818 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 UBAC1Q9BSL1 405 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 CCDC102BQ68D86 513 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 APLFQ8IW19 511 aaPredicted RBP8.2□□□□□ -1.1
VPS53-204ENST00000437048 EIF2AQ9BY44 585 aaKnown RBP8.2□□□□□ -1.1
VPS53-204ENST00000437048 ADCY5O95622 1261 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 MAP2K2P36507 400 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 BRD3Q15059 726 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 CC2D2AQ9P2K1 1620 aa8.2□□□□□ -1.1
VPS53-204ENST00000437048 NUP88Q99567 741 aaPredicted RBP8.19□□□□□ -1.1
VPS53-204ENST00000437048 HOMER2Q9NSB8 354 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 MACROD2A1Z1Q3 448 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 TTF2Q9UNY4 1162 aaKnown RBP8.19□□□□□ -1.1
VPS53-204ENST00000437048 BICDL2A1A5D9 508 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 ACTN4O43707 911 aaKnown RBP8.19□□□□□ -1.1
VPS53-204ENST00000437048 SURF6O75683 361 aaKnown RBP8.19□□□□□ -1.1
VPS53-204ENST00000437048 SPATS2LQ9NUQ6 558 aaKnown RBP8.19□□□□□ -1.1
VPS53-204ENST00000437048 USP5P45974 858 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 APOBRQ0VD83 1088 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 MSANTD4Q8NCY6 345 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 TCP11L2Q8N4U5 519 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.19□□□□□ -1.11e-7■□□□□ 10.9
VPS53-204ENST00000437048 TRIM35Q9UPQ4 493 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 PPP4R3AQ6IN85 833 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 CAPZA3Q96KX2 299 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 GDAP1L1Q96MZ0 367 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 CBX1P83916 185 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 RNASELQ05823 741 aaKnown RBP8.19□□□□□ -1.1
VPS53-204ENST00000437048 CCDC65Q8IXS2 484 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 GPATCH11Q8N954 259 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 HLTFQ14527 1009 aaKnown RBP eCLIP8.19□□□□□ -1.1
VPS53-204ENST00000437048 KRI1Q8N9T8 703 aaKnown RBP8.19□□□□□ -1.1
VPS53-204ENST00000437048 TCP11L1Q9NUJ3 509 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 STK26Q9P289 416 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 TWISTNBQ3B726 338 aaPredicted RBP8.19□□□□□ -1.1
VPS53-204ENST00000437048 C8orf76Q96K31 380 aa8.19□□□□□ -1.1
VPS53-204ENST00000437048 NUTM2FA1L443 756 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 FYB2Q5VWT5 728 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 PHLDB3Q6NSJ2 640 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 MYRIPQ8NFW9 859 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 CIB2O75838 187 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 P3H4Q92791 437 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 UTP14AQ9BVJ6 771 aaKnown RBP8.18□□□□□ -1.1
VPS53-204ENST00000437048 STX6O43752 255 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 KIF5AQ12840 1032 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 PLEKHO1Q53GL0 409 aaPredicted RBP8.18□□□□□ -1.1
VPS53-204ENST00000437048 SLF2Q8IX21 1173 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 BRAPQ7Z569 592 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 ARHGEF12Q9NZN5 1544 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 TTF1Q15361 905 aaPredicted RBP8.18□□□□□ -1.1
VPS53-204ENST00000437048 CNKSR2Q8WXI2 1034 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 PARP2Q9UGN5 583 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 MTUS1Q9ULD2 1270 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 ZMYM4Q5VZL5 1548 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 FAM135AQ9P2D6 1515 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 SMC5Q8IY18 1101 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 TBC1D5Q92609 795 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 TANGO6Q9C0B7 1094 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms