RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 NF2P35240 595 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 MAP9Q49MG5 647 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 TSPY3P0CV98 308 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 TSPY8P0CW00 308 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 GIGYF2Q6Y7W6 1299 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 GON4LQ3T8J9 2241 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 NSD2O96028 1365 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 SETDB2Q96T68 719 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 CRNKL1Q9BZJ0 848 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 CABP5Q9NP86 173 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 TCP11L1Q9NUJ3 509 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 SHROOM2Q13796 1616 aa13.9□□□□□ -0.19
CCDC88A-207ENST00000436346 MYH10P35580 1976 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 DHX29Q7Z478 1369 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 TCERG1LQ5VWI1 586 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 ALS2CR12Q96Q35 445 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 F8W031 263 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 KRT28Q7Z3Y7 464 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 HAND2P61296 217 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 HOMER2Q9NSB8 354 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 UBAP1LF5GYI3 381 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 TOP1P11387 765 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 CNNM3Q8NE01 707 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 ANKRD24Q8TF21 1146 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 SCAND2PQ9GZW5 306 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 FBXO31Q5XUX0 539 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 RPAP2Q8IXW5 612 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 CRACR2AQ9BSW2 395 aa13.89□□□□□ -0.19
CCDC88A-207ENST00000436346 BAZ2BQ9UIF8 2168 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 STAMBPO95630 424 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 TEX13AQ9BXU3 409 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 FLIIQ13045 1269 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 PABPN1LA6NDY0 278 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 TDRD12Q587J7 1177 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 ZNF804AQ7Z570 1209 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 OGFOD1Q8N543 542 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 UBE4AQ14139 1066 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 URB2Q14146 1524 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 METAP2P50579 478 aaKnown RBP eCLIP13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 CLEC11AQ9Y240 323 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 STXBP4Q6ZWJ1 553 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 TNRQ92752 1358 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 TBCAO75347 108 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 GRIPAP1Q4V328 841 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 EVI5LQ96CN4 794 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 MAP2K1Q02750 393 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 STX8Q9UNK0 236 aa13.88□□□□□ -0.19
CCDC88A-207ENST00000436346 EXOC1Q9NV70 894 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 ERMNQ8TAM6 284 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 MMRN2Q9H8L6 949 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 CHRNA2Q15822 529 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 MTIF2P46199 727 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 AMPD3Q01432 767 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 SLFN5Q08AF3 891 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 CCDC40Q4G0X9 1142 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 TSHZ3Q63HK5 1081 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 FAM114A1Q8IWE2 563 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 ZGPATQ8N5A5 531 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 FERMT1Q9BQL6 677 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 TMCO3Q6UWJ1 677 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 CLIP2Q9UDT6 1046 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 ZSCAN12O43309 604 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 ANO10Q9NW15 660 aa13.87□□□□□ -0.19
CCDC88A-207ENST00000436346 KIF20AO95235 890 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 PRPF4BQ13523 1007 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 CADPS2Q86UW7 1296 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 ADAMTS12P58397 1594 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 ERICH4A6NGS2 130 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 BACH2Q9BYV9 841 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 STX1AQ16623 288 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 RAB11FIP4Q86YS3 637 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 TMX1Q9H3N1 280 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 ZNF518AQ6AHZ1 1483 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 PICALMQ13492 652 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 ZNF354CQ86Y25 554 aa13.86□□□□□ -0.19
CCDC88A-207ENST00000436346 SLC26A6Q9BXS9 759 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 TAOK3Q9H2K8 898 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 BCCIPQ9P287 314 aaKnown RBP eCLIP13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 NPATQ14207 1427 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 CCDC174Q6PII3 467 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 CHPF2Q9P2E5 772 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 ECM2O94769 699 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 HEATR3Q7Z4Q2 680 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 GCOM1H8Y6P7 765 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 MYZAPP0CAP1 466 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 LMAN1P49257 510 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 IFIT1BQ5T764 474 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 LDHAL6AQ6ZMR3 332 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 LARP6Q9BRS8 491 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 TBC1D5Q92609 795 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 SNRKQ9NRH2 765 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 YEATS4O95619 227 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 FSIP1Q8NA03 581 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 MCM3P25205 808 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 IFNL2Q8IZJ0 200 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 UTP14AQ9BVJ6 771 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 VEZTQ9HBM0 779 aa13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 CIZ1Q9ULV3 898 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-207ENST00000436346 JARID2Q92833 1246 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-207ENST00000436346 LIMCH1Q9UPQ0 1083 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms