RNA–Protein interactions for RNA: ENST00000436324.5

HMGN1-207, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-207ENST00000436324 PLBD2Q8NHP8 589 aa23.68■■□□□ 1.38
HMGN1-207ENST00000436324 RPGRQ92834 1020 aaKnown RBP23.68■■□□□ 1.38
HMGN1-207ENST00000436324 TNRC6CQ9HCJ0 1690 aaKnown RBP23.67■■□□□ 1.38
HMGN1-207ENST00000436324 SOGA3Q5TF21 947 aa23.67■■□□□ 1.38
HMGN1-207ENST00000436324 C7orf43Q8WVR3 580 aa23.67■■□□□ 1.38
HMGN1-207ENST00000436324 TAOK3Q9H2K8 898 aa23.67■■□□□ 1.38
HMGN1-207ENST00000436324 PHAXQ9H814 394 aaKnown RBP23.67■■□□□ 1.38
HMGN1-207ENST00000436324 SBF1O95248 1867 aa23.66■■□□□ 1.38
HMGN1-207ENST00000436324 CACNA1SQ13698 1873 aa23.66■■□□□ 1.38
HMGN1-207ENST00000436324 CRY2Q49AN0 593 aa23.66■■□□□ 1.38
HMGN1-207ENST00000436324 CCDC93Q567U6 631 aa23.66■■□□□ 1.38
HMGN1-207ENST00000436324 SYNE4Q8N205 404 aa23.66■■□□□ 1.38
HMGN1-207ENST00000436324 TRMT112Q9UI30 125 aaKnown RBP23.66■■□□□ 1.38
HMGN1-207ENST00000436324 ATP5J2-PTCD1G3V325 749 aa23.65■■□□□ 1.38
HMGN1-207ENST00000436324 KDM2BQ8NHM5 1336 aa23.64■■□□□ 1.38
HMGN1-207ENST00000436324 TCERG1O14776 1098 aaKnown RBP23.64■■□□□ 1.37
HMGN1-207ENST00000436324 HCLS1P14317 486 aaPredicted RBP23.64■■□□□ 1.37
HMGN1-207ENST00000436324 CCDC30Q5VVM6 783 aa23.64■■□□□ 1.37
HMGN1-207ENST00000436324 RBM17Q96I25 401 aaKnown RBP23.64■■□□□ 1.37
HMGN1-207ENST00000436324 NLRP3Q96P20 1036 aa23.64■■□□□ 1.37
HMGN1-207ENST00000436324 SLC10A5Q5PT55 438 aa23.63■■□□□ 1.37
HMGN1-207ENST00000436324 RIC3Q7Z5B4 369 aa23.63■■□□□ 1.37
HMGN1-207ENST00000436324 RRAGCQ9HB90 399 aa23.63■■□□□ 1.37
HMGN1-207ENST00000436324 IL16Q14005 1332 aa23.62■■□□□ 1.37
HMGN1-207ENST00000436324 LTBP3Q9NS15 1303 aa23.62■■□□□ 1.37
HMGN1-207ENST00000436324 RIC1Q4ADV7 1423 aa23.62■■□□□ 1.37
HMGN1-207ENST00000436324 GOLGA2Q08379 1002 aa23.62■■□□□ 1.37
HMGN1-207ENST00000436324 NCBP3Q53F19 620 aaKnown RBP23.62■■□□□ 1.37
HMGN1-207ENST00000436324 HOXA10P31260 410 aaPredicted RBP23.61■■□□□ 1.37
HMGN1-207ENST00000436324 ISCA1Q9BUE6 129 aa23.61■■□□□ 1.37
HMGN1-207ENST00000436324 SH3TC1Q8TE82 1336 aa23.6■■□□□ 1.37
HMGN1-207ENST00000436324 ZC3H4Q9UPT8 1303 aaKnown RBP23.6■■□□□ 1.37
HMGN1-207ENST00000436324 ARFGEF2Q9Y6D5 1785 aa23.6■■□□□ 1.37
HMGN1-207ENST00000436324 TWISTNBQ3B726 338 aaPredicted RBP23.6■■□□□ 1.37
HMGN1-207ENST00000436324 FER1L6Q2WGJ9 1857 aa23.6■■□□□ 1.37
HMGN1-207ENST00000436324 RNF123Q5XPI4 1314 aa23.59■■□□□ 1.37
HMGN1-207ENST00000436324 GLTPD2A6NH11 291 aa23.59■■□□□ 1.37
HMGN1-207ENST00000436324 FKBP4Q02790 459 aaKnown RBP eCLIP23.59■■□□□ 1.37
HMGN1-207ENST00000436324 RTL5Q5HYW3 569 aaPredicted RBP23.59■■□□□ 1.37
HMGN1-207ENST00000436324 SLC51AQ86UW1 340 aa23.59■■□□□ 1.37
HMGN1-207ENST00000436324 WDR63Q8IWG1 891 aa23.59■■□□□ 1.37
HMGN1-207ENST00000436324 RTKN2Q8IZC4 609 aa23.59■■□□□ 1.37
HMGN1-207ENST00000436324 CRAMP1Q96RY5 1269 aa23.59■■□□□ 1.37
HMGN1-207ENST00000436324 CHMP4AQ9BY43 222 aa23.59■■□□□ 1.37
HMGN1-207ENST00000436324 ZNF277Q9NRM2 450 aaPredicted RBP23.59■■□□□ 1.37
HMGN1-207ENST00000436324 CCDC88AQ3V6T2 1871 aa23.58■■□□□ 1.37
HMGN1-207ENST00000436324 ANKRD36CQ5JPF3 1778 aa23.58■■□□□ 1.37
HMGN1-207ENST00000436324 C16orf71Q8IYS4 520 aaPredicted RBP23.58■■□□□ 1.37
HMGN1-207ENST00000436324 FAM89AQ96GI7 184 aa23.58■■□□□ 1.37
HMGN1-207ENST00000436324 MYD88Q99836 296 aa23.58■■□□□ 1.37
HMGN1-207ENST00000436324 FANCIQ9NVI1 1328 aa23.58■■□□□ 1.36
HMGN1-207ENST00000436324 PPEF1O14829 653 aaPredicted RBP23.57■■□□□ 1.36
HMGN1-207ENST00000436324 STK31Q9BXU1 1019 aa23.57■■□□□ 1.36
HMGN1-207ENST00000436324 TOMM70O94826 608 aa23.56■■□□□ 1.36
HMGN1-207ENST00000436324 DPY19L2Q6NUT2 758 aa23.56■■□□□ 1.36
HMGN1-207ENST00000436324 DDX58O95786 925 aaKnown RBP23.55■■□□□ 1.36
HMGN1-207ENST00000436324 SPINK5Q9NQ38 1064 aaPredicted RBP23.55■■□□□ 1.36
HMGN1-207ENST00000436324 ABCC4O15439 1325 aa23.55■■□□□ 1.36
HMGN1-207ENST00000436324 TIAM2Q8IVF5 1701 aa23.54■■□□□ 1.36
HMGN1-207ENST00000436324 EXOSC9Q06265 439 aaKnown RBP23.54■■□□□ 1.36
HMGN1-207ENST00000436324 CC2D2BQ6DHV5 1058 aa23.54■■□□□ 1.36
HMGN1-207ENST00000436324 SLC4A2P04920 1241 aa23.53■■□□□ 1.36
HMGN1-207ENST00000436324 TRIM28Q13263 835 aaKnown RBP23.53■■□□□ 1.36
HMGN1-207ENST00000436324 DDX46Q7L014 1031 aaKnown RBP23.53■■□□□ 1.36
HMGN1-207ENST00000436324 G2E3Q7L622 706 aa23.53■■□□□ 1.36
HMGN1-207ENST00000436324 MAP3K2Q9Y2U5 619 aa23.53■■□□□ 1.36
HMGN1-207ENST00000436324 IARSP41252 1262 aaKnown RBP23.52■■□□□ 1.36
HMGN1-207ENST00000436324 JARID2Q92833 1246 aaPredicted RBP23.52■■□□□ 1.36
HMGN1-207ENST00000436324 METTL22Q9BUU2 404 aaPredicted RBP23.52■■□□□ 1.36
HMGN1-207ENST00000436324 TMX4Q9H1E5 349 aaPredicted RBP23.52■■□□□ 1.36
HMGN1-207ENST00000436324 PI4KAP2A4QPH2 592 aa23.51■■□□□ 1.35
HMGN1-207ENST00000436324 IRS4O14654 1257 aaPredicted RBP23.51■■□□□ 1.35
HMGN1-207ENST00000436324 DDNO94850 711 aaPredicted RBP23.51■■□□□ 1.35
HMGN1-207ENST00000436324 VEGFAP15692 232 aaPredicted RBP23.51■■□□□ 1.35
HMGN1-207ENST00000436324 PI4KAP1Q8N8J0 262 aa23.51■■□□□ 1.35
HMGN1-207ENST00000436324 PSMD1Q99460 953 aa23.51■■□□□ 1.35
HMGN1-207ENST00000436324 HSPA6P17066 643 aa23.5■■□□□ 1.35
HMGN1-207ENST00000436324 KSR2Q6VAB6 950 aa23.5■■□□□ 1.35
HMGN1-207ENST00000436324 RBM46Q8TBY0 533 aaKnown RBP23.5■■□□□ 1.35
HMGN1-207ENST00000436324 ATP6V0A2Q9Y487 856 aa23.5■■□□□ 1.35
HMGN1-207ENST00000436324 VAMP4O75379 141 aa23.49■■□□□ 1.35
HMGN1-207ENST00000436324 BBOX1O75936 387 aa23.49■■□□□ 1.35
HMGN1-207ENST00000436324 ZBTB38Q8NAP3 1195 aaPredicted RBP23.49■■□□□ 1.35
HMGN1-207ENST00000436324 CCDC191Q8NCU4 936 aa23.49■■□□□ 1.35
HMGN1-207ENST00000436324 CWC25Q9NXE8 425 aaPredicted RBP23.49■■□□□ 1.35
HMGN1-207ENST00000436324 SNED1Q8TER0 1413 aa23.49■■□□□ 1.35
HMGN1-207ENST00000436324 POTECB2RU33 542 aa23.48■■□□□ 1.35
HMGN1-207ENST00000436324 GRAPQ13588 217 aa23.48■■□□□ 1.35
HMGN1-207ENST00000436324 GRAPLQ8TC17 118 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-207ENST00000436324 MYH16Q9H6N6 1097 aa23.48■■□□□ 1.35
HMGN1-207ENST00000436324 DICER1Q9UPY3 1922 aaKnown RBP23.48■■□□□ 1.35
HMGN1-207ENST00000436324 GRIPAP1Q4V328 841 aa23.47■■□□□ 1.35
HMGN1-207ENST00000436324 ZNF541Q9H0D2 1346 aa23.47■■□□□ 1.35
HMGN1-207ENST00000436324 LAMB2P55268 1798 aa23.47■■□□□ 1.35
HMGN1-207ENST00000436324 SF3B3Q15393 1217 aaKnown RBP23.46■■□□□ 1.35
HMGN1-207ENST00000436324 SP8Q8IXZ3 490 aa23.46■■□□□ 1.35
HMGN1-207ENST00000436324 LARGE2Q8N3Y3 721 aa23.46■■□□□ 1.35
HMGN1-207ENST00000436324 JDP2Q8WYK2 163 aa23.46■■□□□ 1.35
HMGN1-207ENST00000436324 PCCAP05165 728 aaPredicted RBP23.45■■□□□ 1.34
HMGN1-207ENST00000436324 IGKV5-2P06315 115 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms