RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ADCK5Q3MIX3 580 aa13.49□□□□□ -0.25
USP4-205ENST00000431357 CREB3L3Q68CJ9 461 aa13.49□□□□□ -0.25
USP4-205ENST00000431357 LARP1Q6PKG0 1096 aaKnown RBP13.49□□□□□ -0.25
USP4-205ENST00000431357 ADAMTS7Q9UKP4 1686 aa13.49□□□□□ -0.25
USP4-205ENST00000431357 SASH1O94885 1247 aa13.49□□□□□ -0.25
USP4-205ENST00000431357 LARGE1O95461 756 aa13.49□□□□□ -0.25
USP4-205ENST00000431357 PDCP20941 246 aa13.49□□□□□ -0.25
USP4-205ENST00000431357 KIAA2012Q0VF49 1180 aa13.49□□□□□ -0.25
USP4-205ENST00000431357 SIPA1L3O60292 1781 aaPredicted RBP13.49□□□□□ -0.25
USP4-205ENST00000431357 CPA1P15085 419 aa13.48□□□□□ -0.25
USP4-205ENST00000431357 NEXNQ0ZGT2 675 aa13.48□□□□□ -0.25
USP4-205ENST00000431357 NMIQ13287 307 aaPredicted RBP13.48□□□□□ -0.25
USP4-205ENST00000431357 EAF2Q96CJ1 260 aaPredicted RBP13.48□□□□□ -0.25
USP4-205ENST00000431357 BICC1Q9H694 974 aaKnown RBP13.48□□□□□ -0.25
USP4-205ENST00000431357 FIBPO43427 364 aa13.48□□□□□ -0.25
USP4-205ENST00000431357 ME3Q16798 604 aa13.48□□□□□ -0.25
USP4-205ENST00000431357 KAZALD1Q96I82 304 aa13.48□□□□□ -0.25
USP4-205ENST00000431357 LARP6Q9BRS8 491 aaKnown RBP13.48□□□□□ -0.25
USP4-205ENST00000431357 HMG20BQ9P0W2 317 aa13.48□□□□□ -0.25
USP4-205ENST00000431357 SETD1BQ9UPS6 1966 aaKnown RBP13.48□□□□□ -0.25
USP4-205ENST00000431357 TCHHQ07283 1943 aa13.47□□□□□ -0.25
USP4-205ENST00000431357 SLC27A2O14975 620 aa13.47□□□□□ -0.25
USP4-205ENST00000431357 RIC3Q7Z5B4 369 aa13.47□□□□□ -0.25
USP4-205ENST00000431357 MAP7D2Q96T17 732 aa13.47□□□□□ -0.25
USP4-205ENST00000431357 MRC1P22897 1456 aa13.46□□□□□ -0.25
USP4-205ENST00000431357 PDIA6Q15084 440 aa13.46□□□□□ -0.25
USP4-205ENST00000431357 TSGA10IPQ3SY00 556 aa13.46□□□□□ -0.25
USP4-205ENST00000431357 BLOC1S2Q6QNY1 142 aa13.46□□□□□ -0.25
USP4-205ENST00000431357 SASS6Q6UVJ0 657 aa13.46□□□□□ -0.25
USP4-205ENST00000431357 FUCA2Q9BTY2 467 aa13.46□□□□□ -0.25
USP4-205ENST00000431357 PRDM4Q9UKN5 801 aa13.46□□□□□ -0.25
USP4-205ENST00000431357 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.46□□□□□ -0.25
USP4-205ENST00000431357 ZNF142P52746 1687 aaPredicted RBP13.46□□□□□ -0.25
USP4-205ENST00000431357 ELP1O95163 1332 aa13.46□□□□□ -0.26
USP4-205ENST00000431357 KDM4AO75164 1064 aa13.46□□□□□ -0.26
USP4-205ENST00000431357 DNM1Q05193 864 aaKnown RBP13.46□□□□□ -0.26
USP4-205ENST00000431357 LARP1BQ659C4 914 aaKnown RBP13.46□□□□□ -0.26
USP4-205ENST00000431357 FAM227BQ96M60 508 aa13.46□□□□□ -0.26
USP4-205ENST00000431357 FSD1Q9BTV5 496 aa13.46□□□□□ -0.26
USP4-205ENST00000431357 CCDC8Q9H0W5 538 aaPredicted RBP13.46□□□□□ -0.26
USP4-205ENST00000431357 JCADQ9P266 1359 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 MED23Q9ULK4 1368 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 VPS37CA5D8V6 355 aaPredicted RBP13.45□□□□□ -0.26
USP4-205ENST00000431357 ADCY5O95622 1261 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 KRT85P78386 507 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 ST3GAL1Q11201 340 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 TPCN1Q9ULQ1 816 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 RFX7Q2KHR2 1363 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 PRAMEF22A3QJZ6 481 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 IGKV5-2P06315 115 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 TPM3P06753 285 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 HCLS1P14317 486 aaPredicted RBP13.45□□□□□ -0.26
USP4-205ENST00000431357 RPS6KB1P23443 525 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 AIMP1Q12904 312 aaKnown RBP13.45□□□□□ -0.26
USP4-205ENST00000431357 KRT32Q14532 448 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 ZNF790Q6PG37 636 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 USP25Q9UHP3 1055 aa13.45□□□□□ -0.26
USP4-205ENST00000431357 MST1RQ04912 1400 aa13.44□□□□□ -0.26
USP4-205ENST00000431357 PLEKHG2Q9H7P9 1386 aa13.44□□□□□ -0.26
USP4-205ENST00000431357 NEURL1BA8MQ27 555 aa13.44□□□□□ -0.26
USP4-205ENST00000431357 DYNC1I1O14576 645 aa13.44□□□□□ -0.26
USP4-205ENST00000431357 GCKRQ14397 625 aa13.44□□□□□ -0.26
USP4-205ENST00000431357 METTL22Q9BUU2 404 aaPredicted RBP13.44□□□□□ -0.26
USP4-205ENST00000431357 BOLA2Q9H3K6 86 aa13.44□□□□□ -0.26
USP4-205ENST00000431357 COPRSQ9NQ92 184 aa13.44□□□□□ -0.26
USP4-205ENST00000431357 UQCRHLA0A096LP55 91 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 UQCRHP07919 91 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 PIBF1Q8WXW3 757 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 ORAI2Q96SN7 254 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 SLC52A2Q9HAB3 445 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 NPHP4O75161 1426 aaPredicted RBP13.43□□□□□ -0.26
USP4-205ENST00000431357 COL15A1P39059 1388 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 A0A0D9SFI3 127 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 CCDC192P0DO97 292 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 ATP5JP18859 108 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 MTERF4Q7Z6M4 381 aaKnown RBP13.43□□□□□ -0.26
USP4-205ENST00000431357 NECAB1Q8N987 351 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 RAPGEF4Q8WZA2 1011 aa13.43□□□□□ -0.26
USP4-205ENST00000431357 RBM33Q96EV2 1170 aaKnown RBP13.43□□□□□ -0.26
USP4-205ENST00000431357 SCAND2PQ9GZW5 306 aaPredicted RBP13.43□□□□□ -0.26
USP4-205ENST00000431357 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.43□□□□□ -0.264e-6■■■■■ 27.4
USP4-205ENST00000431357 ERBB3P21860 1342 aa13.42□□□□□ -0.26
USP4-205ENST00000431357 USPL1Q5W0Q7 1092 aa13.42□□□□□ -0.26
USP4-205ENST00000431357 GIMAP6Q6P9H5 292 aa13.42□□□□□ -0.26
USP4-205ENST00000431357 KRT28Q7Z3Y7 464 aa13.42□□□□□ -0.26
USP4-205ENST00000431357 TLR7Q9NYK1 1049 aaKnown RBP13.42□□□□□ -0.26
USP4-205ENST00000431357 AXIN2Q9Y2T1 843 aa13.42□□□□□ -0.26
USP4-205ENST00000431357 TRPM3Q9HCF6 1732 aaPredicted RBP13.42□□□□□ -0.26
USP4-205ENST00000431357 LMOD2Q6P5Q4 547 aa13.42□□□□□ -0.26
USP4-205ENST00000431357 XAGE3Q8WTP9 111 aa13.42□□□□□ -0.26
USP4-205ENST00000431357 BCL11BQ9C0K0 894 aaPredicted RBP13.42□□□□□ -0.26
USP4-205ENST00000431357 SIL1Q9H173 461 aa13.42□□□□□ -0.26
USP4-205ENST00000431357 ABCC6O95255 1503 aa13.41□□□□□ -0.26
USP4-205ENST00000431357 NPHP3Q7Z494 1330 aa13.41□□□□□ -0.26
USP4-205ENST00000431357 TAF5LO75529 589 aa13.41□□□□□ -0.26
USP4-205ENST00000431357 TATP17735 454 aaPredicted RBP13.41□□□□□ -0.26
USP4-205ENST00000431357 MYD88Q99836 296 aa13.41□□□□□ -0.26
USP4-205ENST00000431357 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.41□□□□□ -0.26
USP4-205ENST00000431357 KIF1AQ12756 1690 aa13.41□□□□□ -0.26
USP4-205ENST00000431357 NOLC1Q14978 699 aaKnown RBP eCLIP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 129 ms