RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ICMTO60725 284 aa10.53□□□□□ -0.72
CCDC88A-206ENST00000430086 SRSF11Q05519 484 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-206ENST00000430086 KCTD17Q8N5Z5 321 aa10.53□□□□□ -0.72
CCDC88A-206ENST00000430086 C11orf16Q9NQ32 467 aa10.53□□□□□ -0.72
CCDC88A-206ENST00000430086 NSFL1CQ9UNZ2 370 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-206ENST00000430086 KCNH4Q9UQ05 1017 aa10.53□□□□□ -0.72
CCDC88A-206ENST00000430086 ZBTB39O15060 712 aa10.52□□□□□ -0.73
CCDC88A-206ENST00000430086 EPB42P16452 691 aa10.52□□□□□ -0.73
CCDC88A-206ENST00000430086 CD33P20138 364 aa10.52□□□□□ -0.73
CCDC88A-206ENST00000430086 MTMR3Q13615 1198 aa10.52□□□□□ -0.73
CCDC88A-206ENST00000430086 FAM13AO94988 1023 aa10.51□□□□□ -0.73
CCDC88A-206ENST00000430086 MAP2K3P46734 347 aa10.51□□□□□ -0.73
CCDC88A-206ENST00000430086 ZNF211Q13398 564 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-206ENST00000430086 FAM13BQ9NYF5 915 aa10.51□□□□□ -0.73
CCDC88A-206ENST00000430086 C2CD2LO14523 706 aa10.5□□□□□ -0.73
CCDC88A-206ENST00000430086 BMP4P12644 408 aa10.5□□□□□ -0.73
CCDC88A-206ENST00000430086 MPSTP25325 297 aa10.5□□□□□ -0.73
CCDC88A-206ENST00000430086 GRNP28799 593 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-206ENST00000430086 ZAP70P43403 619 aa10.5□□□□□ -0.73
CCDC88A-206ENST00000430086 NOM1Q5C9Z4 860 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-206ENST00000430086 ANO2Q9NQ90 1003 aa10.5□□□□□ -0.73
CCDC88A-206ENST00000430086 IGF1RP08069 1367 aa10.5□□□□□ -0.73
CCDC88A-206ENST00000430086 SLURP2P0DP57 97 aa10.49□□□□□ -0.73
CCDC88A-206ENST00000430086 ALKBH2Q6NS38 261 aa10.49□□□□□ -0.73
CCDC88A-206ENST00000430086 RTCBQ9Y3I0 505 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-206ENST00000430086 EIF1AXP47813 144 aaKnown RBP10.48□□□□□ -0.73
CCDC88A-206ENST00000430086 EFCC1Q9HA90 598 aa10.48□□□□□ -0.73
CCDC88A-206ENST00000430086 AVENQ9NQS1 362 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-206ENST00000430086 IVNS1ABPQ9Y6Y0 642 aa10.48□□□□□ -0.73
CCDC88A-206ENST00000430086 SOWAHDA6NJG2 315 aa10.47□□□□□ -0.73
CCDC88A-206ENST00000430086 H3BRB1 525 aa10.47□□□□□ -0.73
CCDC88A-206ENST00000430086 ADAMTS2O95450 1211 aa10.47□□□□□ -0.73
CCDC88A-206ENST00000430086 SPEM2Q0P670 501 aa10.47□□□□□ -0.73
CCDC88A-206ENST00000430086 GRIN2CQ14957 1233 aa10.47□□□□□ -0.73
CCDC88A-206ENST00000430086 ECM1Q16610 540 aa10.47□□□□□ -0.73
CCDC88A-206ENST00000430086 GLYCTKQ8IVS8 523 aa10.47□□□□□ -0.73
CCDC88A-206ENST00000430086 TUT1Q9H6E5 874 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-206ENST00000430086 EGFRP00533 1210 aa10.46□□□□□ -0.73
CCDC88A-206ENST00000430086 AEBP1Q8IUX7 1158 aa10.46□□□□□ -0.73
CCDC88A-206ENST00000430086 RGL4Q8IZJ4 473 aa10.46□□□□□ -0.73
CCDC88A-206ENST00000430086 PIK3R5Q8WYR1 880 aa10.46□□□□□ -0.73
CCDC88A-206ENST00000430086 SLC30A3Q99726 388 aa10.46□□□□□ -0.73
CCDC88A-206ENST00000430086 GSX2Q9BZM3 304 aa10.46□□□□□ -0.73
CCDC88A-206ENST00000430086 ARAFP10398 606 aa10.45□□□□□ -0.74
CCDC88A-206ENST00000430086 CCINQ13939 588 aa10.45□□□□□ -0.74
CCDC88A-206ENST00000430086 ZNF468Q5VIY5 522 aaPredicted RBP10.45□□□□□ -0.74
CCDC88A-206ENST00000430086 ATCAYQ86WG3 371 aa10.45□□□□□ -0.74
CCDC88A-206ENST00000430086 PRR12Q9ULL5 1215 aa10.45□□□□□ -0.74
CCDC88A-206ENST00000430086 KCNMB2Q9Y691 235 aa10.45□□□□□ -0.74
CCDC88A-206ENST00000430086 GPR152Q8TDT2 470 aa10.44□□□□□ -0.74
CCDC88A-206ENST00000430086 USP20Q9Y2K6 914 aa10.44□□□□□ -0.74
CCDC88A-206ENST00000430086 MZF1P28698 734 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-206ENST00000430086 ARHGAP4P98171 946 aa10.43□□□□□ -0.74
CCDC88A-206ENST00000430086 NEUROD1Q13562 356 aa10.43□□□□□ -0.74
CCDC88A-206ENST00000430086 CMTR1Q8N1G2 835 aaKnown RBP10.43□□□□□ -0.74
CCDC88A-206ENST00000430086 OXCT2Q9BYC2 517 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-206ENST00000430086 GDF2Q9UK05 429 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-206ENST00000430086 RPLP1P05386 114 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-206ENST00000430086 GOLGA6L1Q8N7Z2 621 aa10.42□□□□□ -0.74
CCDC88A-206ENST00000430086 EDEM1Q92611 657 aa10.42□□□□□ -0.74
CCDC88A-206ENST00000430086 ACDQ96AP0 544 aa10.42□□□□□ -0.74
CCDC88A-206ENST00000430086 FZD6O60353 706 aa10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 XYLBO75191 536 aa10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 PDGFAP04085 211 aa10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 ADH6P28332 368 aa10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 TRIP4Q15650 581 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 NUDT16Q96DE0 195 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 LRRC4BQ9NT99 713 aa10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 KLF15Q9UIH9 416 aa10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 FNDC3AQ9Y2H6 1198 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-206ENST00000430086 SIN3BO75182 1162 aa10.4□□□□□ -0.74
CCDC88A-206ENST00000430086 PCSK2P16519 638 aa10.4□□□□□ -0.74
CCDC88A-206ENST00000430086 LORP23490 312 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-206ENST00000430086 DNM1Q05193 864 aaKnown RBP10.4□□□□□ -0.74
CCDC88A-206ENST00000430086 AAMPQ13685 434 aa10.4□□□□□ -0.74
CCDC88A-206ENST00000430086 SYT9Q86SS6 491 aa10.4□□□□□ -0.74
CCDC88A-206ENST00000430086 INSM1Q01101 510 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-206ENST00000430086 SLCO4C1Q6ZQN7 724 aa10.39□□□□□ -0.75
CCDC88A-206ENST00000430086 BHMTQ93088 406 aa10.39□□□□□ -0.75
CCDC88A-206ENST00000430086 PNMA5Q96PV4 448 aa10.39□□□□□ -0.75
CCDC88A-206ENST00000430086 GGA1Q9UJY5 639 aa10.39□□□□□ -0.75
CCDC88A-206ENST00000430086 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-206ENST00000430086 UBAP1LF5GYI3 381 aa10.38□□□□□ -0.75
CCDC88A-206ENST00000430086 MAP3K6O95382 1288 aa10.38□□□□□ -0.75
CCDC88A-206ENST00000430086 USP5P45974 858 aa10.38□□□□□ -0.75
CCDC88A-206ENST00000430086 PCBP4P57723 403 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-206ENST00000430086 LYPD4Q6UWN0 246 aa10.38□□□□□ -0.75
CCDC88A-206ENST00000430086 RAB44Q7Z6P3 723 aaPredicted RBP10.38□□□□□ -0.75
CCDC88A-206ENST00000430086 CCDC87Q9NVE4 849 aa10.38□□□□□ -0.75
CCDC88A-206ENST00000430086 POLIQ9UNA4 740 aa10.38□□□□□ -0.75
CCDC88A-206ENST00000430086 NEURL1BA8MQ27 555 aa10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 SASH3O75995 380 aa10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 CELA2BP08218 269 aaPredicted RBP10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 BCRP11274 1271 aa10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 NFKB1P19838 968 aa10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 ZNF385CQ66K41 422 aaPredicted RBP10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 PDE12Q6L8Q7 609 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 NLRP13Q86W25 1043 aa10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 FCHSD1Q86WN1 690 aa10.37□□□□□ -0.75
CCDC88A-206ENST00000430086 WHAMMQ8TF30 809 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms