RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 C2CD5Q86YS7 1000 aa11.79□□□□□ -0.52
SMC1A-203ENST00000428014 SPDYE1Q8NFV5 336 aaPredicted RBP11.79□□□□□ -0.52
SMC1A-203ENST00000428014 BCS1LQ9Y276 419 aa11.79□□□□□ -0.52
SMC1A-203ENST00000428014 NTSR2O95665 410 aa11.78□□□□□ -0.52
SMC1A-203ENST00000428014 DDX58O95786 925 aaKnown RBP11.78□□□□□ -0.52
SMC1A-203ENST00000428014 MYL6BP14649 208 aa11.78□□□□□ -0.52
SMC1A-203ENST00000428014 VASPP50552 380 aaPredicted RBP11.78□□□□□ -0.52
SMC1A-203ENST00000428014 XAGE3Q8WTP9 111 aa11.78□□□□□ -0.52
SMC1A-203ENST00000428014 ISCA1Q9BUE6 129 aa11.78□□□□□ -0.52
SMC1A-203ENST00000428014 CHPF2Q9P2E5 772 aa11.78□□□□□ -0.52
SMC1A-203ENST00000428014 LAS1LQ9Y4W2 734 aaKnown RBP11.78□□□□□ -0.52
SMC1A-203ENST00000428014 UBN2Q6ZU65 1347 aa11.78□□□□□ -0.52
SMC1A-203ENST00000428014 CT47B1P0C2W7 299 aaPredicted RBP11.77□□□□□ -0.53
SMC1A-203ENST00000428014 PIP4K2AP48426 406 aaPredicted RBP11.77□□□□□ -0.53
SMC1A-203ENST00000428014 GOLGA2Q08379 1002 aa11.77□□□□□ -0.53
SMC1A-203ENST00000428014 PROSER3Q2NL68 480 aa11.77□□□□□ -0.53
SMC1A-203ENST00000428014 BICDL1Q6ZP65 573 aa11.77□□□□□ -0.53
SMC1A-203ENST00000428014 TMC4Q7Z404 712 aa11.77□□□□□ -0.53
SMC1A-203ENST00000428014 ZNF784Q8NCA9 323 aaPredicted RBP11.77□□□□□ -0.53
SMC1A-203ENST00000428014 C7orf43Q8WVR3 580 aa11.77□□□□□ -0.53
SMC1A-203ENST00000428014 CRAMP1Q96RY5 1269 aa11.77□□□□□ -0.53
SMC1A-203ENST00000428014 UTP14AQ9BVJ6 771 aaKnown RBP11.77□□□□□ -0.53
SMC1A-203ENST00000428014 CLEC11AQ9Y240 323 aa11.77□□□□□ -0.53
SMC1A-203ENST00000428014 NPHP1O15259 732 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 CHRNA5P30532 468 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 KRT24Q2M2I5 525 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 TWISTNBQ3B726 338 aaPredicted RBP11.76□□□□□ -0.53
SMC1A-203ENST00000428014 NLRP10Q86W26 655 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 C8orf58Q8NAV2 365 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 CCDC191Q8NCU4 936 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 STK31Q9BXU1 1019 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 VPS33BQ9H267 617 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 ZBTB3Q9H5J0 574 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 FANCIQ9NVI1 1328 aa11.76□□□□□ -0.53
SMC1A-203ENST00000428014 COL11A2P13942 1736 aaPredicted RBP11.75□□□□□ -0.53
SMC1A-203ENST00000428014 FER1L6Q2WGJ9 1857 aa11.75□□□□□ -0.53
SMC1A-203ENST00000428014 E9PSI1 815 aa11.75□□□□□ -0.53
SMC1A-203ENST00000428014 GTF2E1P29083 439 aaPredicted RBP11.75□□□□□ -0.53
SMC1A-203ENST00000428014 PELP1Q8IZL8 1130 aaKnown RBP11.75□□□□□ -0.53
SMC1A-203ENST00000428014 NLRP3Q96P20 1036 aa11.75□□□□□ -0.53
SMC1A-203ENST00000428014 SH3TC1Q8TE82 1336 aa11.75□□□□□ -0.53
SMC1A-203ENST00000428014 SBF1O95248 1867 aa11.74□□□□□ -0.53
SMC1A-203ENST00000428014 VAMP4O75379 141 aa11.74□□□□□ -0.53
SMC1A-203ENST00000428014 LMNB1P20700 586 aa11.74□□□□□ -0.53
SMC1A-203ENST00000428014 SUSD4Q5VX71 490 aa11.74□□□□□ -0.53
SMC1A-203ENST00000428014 KSR2Q6VAB6 950 aa11.74□□□□□ -0.53
SMC1A-203ENST00000428014 RTKN2Q8IZC4 609 aa11.74□□□□□ -0.53
SMC1A-203ENST00000428014 FAM9BQ8IZU0 186 aa11.74□□□□□ -0.53
SMC1A-203ENST00000428014 SNED1Q8TER0 1413 aa11.74□□□□□ -0.53
SMC1A-203ENST00000428014 PITPNM1O00562 1244 aa11.73□□□□□ -0.53
SMC1A-203ENST00000428014 SF3B3Q15393 1217 aaKnown RBP11.73□□□□□ -0.53
SMC1A-203ENST00000428014 PRPF40BQ6NWY9 871 aaKnown RBP11.73□□□□□ -0.53
SMC1A-203ENST00000428014 ARHGAP27Q6ZUM4 889 aa11.73□□□□□ -0.53
SMC1A-203ENST00000428014 PSMD1Q99460 953 aa11.73□□□□□ -0.53
SMC1A-203ENST00000428014 METTL22Q9BUU2 404 aaPredicted RBP11.73□□□□□ -0.53
SMC1A-203ENST00000428014 DICER1Q9UPY3 1922 aaKnown RBP11.72□□□□□ -0.53
SMC1A-203ENST00000428014 ABCC12Q96J65 1359 aa11.72□□□□□ -0.53
SMC1A-203ENST00000428014 BBOX1O75936 387 aa11.72□□□□□ -0.53
SMC1A-203ENST00000428014 CCDC93Q567U6 631 aa11.72□□□□□ -0.53
SMC1A-203ENST00000428014 TRMT2AQ8IZ69 625 aaKnown RBP11.72□□□□□ -0.53
SMC1A-203ENST00000428014 TSPYL6Q8N831 410 aa11.72□□□□□ -0.53
SMC1A-203ENST00000428014 ZBTB38Q8NAP3 1195 aaPredicted RBP11.72□□□□□ -0.53
SMC1A-203ENST00000428014 RBM17Q96I25 401 aaKnown RBP11.72□□□□□ -0.53
SMC1A-203ENST00000428014 CDHR2Q9BYE9 1310 aa11.71□□□□□ -0.53
SMC1A-203ENST00000428014 ANXA1P04083 346 aa11.71□□□□□ -0.53
SMC1A-203ENST00000428014 PCCAP05165 728 aaPredicted RBP11.71□□□□□ -0.53
SMC1A-203ENST00000428014 ERFEQ4G0M1 354 aa11.71□□□□□ -0.53
SMC1A-203ENST00000428014 RIC3Q7Z5B4 369 aa11.71□□□□□ -0.53
SMC1A-203ENST00000428014 RPGRQ92834 1020 aaKnown RBP11.71□□□□□ -0.53
SMC1A-203ENST00000428014 TSR2Q969E8 191 aaKnown RBP11.71□□□□□ -0.53
SMC1A-203ENST00000428014 ZNF622Q969S3 477 aaKnown RBP eCLIP11.71□□□□□ -0.534e-8■■■□□ 17.1
SMC1A-203ENST00000428014 TAOK3Q9H2K8 898 aa11.71□□□□□ -0.53
SMC1A-203ENST00000428014 TRMT112Q9UI30 125 aaKnown RBP11.71□□□□□ -0.53
SMC1A-203ENST00000428014 SLX4Q8IY92 1834 aa11.71□□□□□ -0.54
SMC1A-203ENST00000428014 LAMB2P55268 1798 aa11.71□□□□□ -0.54
SMC1A-203ENST00000428014 NFKBIEO00221 500 aa11.7□□□□□ -0.54
SMC1A-203ENST00000428014 GPTP24298 496 aa11.7□□□□□ -0.54
SMC1A-203ENST00000428014 BRPF1P55201 1214 aaPredicted RBP11.7□□□□□ -0.54
SMC1A-203ENST00000428014 NEXNQ0ZGT2 675 aa11.7□□□□□ -0.54
SMC1A-203ENST00000428014 AIMP1Q12904 312 aaKnown RBP11.7□□□□□ -0.54
SMC1A-203ENST00000428014 RTL9Q8NET4 1388 aa11.69□□□□□ -0.54
SMC1A-203ENST00000428014 TNRC6CQ9HCJ0 1690 aaKnown RBP11.69□□□□□ -0.54
SMC1A-203ENST00000428014 KDM2BQ8NHM5 1336 aa11.69□□□□□ -0.54
SMC1A-203ENST00000428014 FKBP4Q02790 459 aaKnown RBP eCLIP11.69□□□□□ -0.54
SMC1A-203ENST00000428014 SLFN5Q08AF3 891 aa11.69□□□□□ -0.54
SMC1A-203ENST00000428014 FLIIQ13045 1269 aa11.69□□□□□ -0.54
SMC1A-203ENST00000428014 C9orf131Q5VYM1 1079 aa11.69□□□□□ -0.54
SMC1A-203ENST00000428014 DIEXFQ68CQ4 756 aaKnown RBP11.69□□□□□ -0.54
SMC1A-203ENST00000428014 NUTM1Q86Y26 1132 aa11.69□□□□□ -0.54
SMC1A-203ENST00000428014 LINS1Q8NG48 757 aa11.69□□□□□ -0.54
SMC1A-203ENST00000428014 RTFDC1Q9BY42 306 aaPredicted RBP11.69□□□□□ -0.54
SMC1A-203ENST00000428014 PHAXQ9H814 394 aaKnown RBP11.69□□□□□ -0.54
SMC1A-203ENST00000428014 CWC25Q9NXE8 425 aaPredicted RBP11.69□□□□□ -0.54
SMC1A-203ENST00000428014 PI4KAP2A4QPH2 592 aa11.68□□□□□ -0.54
SMC1A-203ENST00000428014 ELL2O00472 640 aaPredicted RBP11.68□□□□□ -0.54
SMC1A-203ENST00000428014 EXOSC9Q06265 439 aaKnown RBP11.68□□□□□ -0.54
SMC1A-203ENST00000428014 ALDH1L2Q3SY69 923 aa11.68□□□□□ -0.54
SMC1A-203ENST00000428014 SP8Q8IXZ3 490 aa11.68□□□□□ -0.54
SMC1A-203ENST00000428014 PI4KAP1Q8N8J0 262 aa11.68□□□□□ -0.54
SMC1A-203ENST00000428014 NECTIN2Q92692 538 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms