RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 TTC5Q8N0Z6 440 aa17.17■□□□□ 0.34
LIG1-202ENST00000427526 RUFY2Q8WXA3 655 aa17.17■□□□□ 0.34
LIG1-202ENST00000427526 TSPY26PQ9H489 355 aa17.17■□□□□ 0.34
LIG1-202ENST00000427526 COL5A2P05997 1499 aaPredicted RBP17.16■□□□□ 0.34
LIG1-202ENST00000427526 ZSCAN22P10073 491 aaPredicted RBP17.16■□□□□ 0.34
LIG1-202ENST00000427526 ERC1Q8IUD2 1116 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 DIAPH3Q9NSV4 1193 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 PA2G4Q9UQ80 394 aaKnown RBP17.16■□□□□ 0.34
LIG1-202ENST00000427526 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.16■□□□□ 0.34
LIG1-202ENST00000427526 TCHHQ07283 1943 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 SCN11AQ9UI33 1791 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 UTYO14607 1347 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 SYT1P21579 422 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 EVA1CP58658 441 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 KAZALD1Q96I82 304 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 HDAC5Q9UQL6 1122 aa17.16■□□□□ 0.34
LIG1-202ENST00000427526 CASTP20810 708 aaKnown RBP17.15■□□□□ 0.34
LIG1-202ENST00000427526 LARP6Q9BRS8 491 aaKnown RBP17.15■□□□□ 0.34
LIG1-202ENST00000427526 STX6O43752 255 aa17.15■□□□□ 0.34
LIG1-202ENST00000427526 CPA1P15085 419 aa17.15■□□□□ 0.34
LIG1-202ENST00000427526 RNF214Q8ND24 703 aa17.15■□□□□ 0.34
LIG1-202ENST00000427526 TM6SF1Q9BZW5 370 aa17.15■□□□□ 0.34
LIG1-202ENST00000427526 ADCK5Q3MIX3 580 aa17.15■□□□□ 0.34
LIG1-202ENST00000427526 VPS53Q5VIR6 699 aa17.15■□□□□ 0.34
LIG1-202ENST00000427526 DDX54Q8TDD1 881 aaKnown RBP17.15■□□□□ 0.34
LIG1-202ENST00000427526 EVI5LQ96CN4 794 aa17.15■□□□□ 0.34
LIG1-202ENST00000427526 ZSWIM6Q9HCJ5 1215 aa17.15■□□□□ 0.34
LIG1-202ENST00000427526 LARGE1O95461 756 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 IFIT2P09913 472 aaKnown RBP17.14■□□□□ 0.33
LIG1-202ENST00000427526 NECTIN1Q15223 517 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 LINS1Q8NG48 757 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 CARD10Q9BWT7 1032 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 ZKSCAN5Q9Y2L8 839 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 PHF14O94880 888 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 TPM2P07951 284 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 SNRPA1P09661 255 aaKnown RBP17.14■□□□□ 0.33
LIG1-202ENST00000427526 XAGE3Q8WTP9 111 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 GPATCH3Q96I76 525 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 CNPY2Q9Y2B0 182 aa17.14■□□□□ 0.33
LIG1-202ENST00000427526 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.14■□□□□ 0.33
LIG1-202ENST00000427526 SASH1O94885 1247 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 IL2RBP14784 551 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 PDE4CQ08493 712 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 COPS6Q7L5N1 327 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 GRM8O00222 908 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 MCM5P33992 734 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 SUCLG2Q96I99 432 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 FMNL2Q96PY5 1086 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 DDX58O95786 925 aaKnown RBP17.13■□□□□ 0.33
LIG1-202ENST00000427526 F13A1P00488 732 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 PRPF40BQ6NWY9 871 aaKnown RBP17.13■□□□□ 0.33
LIG1-202ENST00000427526 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.13■□□□□ 0.33
LIG1-202ENST00000427526 RIC3Q7Z5B4 369 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 SMC3Q9UQE7 1217 aa17.13■□□□□ 0.33
LIG1-202ENST00000427526 PCDH11XQ9BZA7 1347 aa17.12■□□□□ 0.33
LIG1-202ENST00000427526 PCDH11YQ9BZA8 1340 aa17.12■□□□□ 0.33
LIG1-202ENST00000427526 PLEKHG2Q9H7P9 1386 aa17.12■□□□□ 0.33
LIG1-202ENST00000427526 AACSQ86V21 672 aa17.12■□□□□ 0.33
LIG1-202ENST00000427526 CCDC39Q9UFE4 941 aa17.12■□□□□ 0.33
LIG1-202ENST00000427526 EAF2Q96CJ1 260 aaPredicted RBP17.12■□□□□ 0.33
LIG1-202ENST00000427526 JAKMIP1Q96N16 626 aaKnown RBP17.12■□□□□ 0.33
LIG1-202ENST00000427526 SNRKQ9NRH2 765 aa17.12■□□□□ 0.33
LIG1-202ENST00000427526 PDRG1Q9NUG6 133 aa17.12■□□□□ 0.33
LIG1-202ENST00000427526 PKD1L3Q7Z443 1732 aa17.12■□□□□ 0.33
LIG1-202ENST00000427526 BICC1Q9H694 974 aaKnown RBP17.11■□□□□ 0.33
LIG1-202ENST00000427526 MRC1P22897 1456 aa17.11■□□□□ 0.33
LIG1-202ENST00000427526 TERF1P54274 439 aa17.11■□□□□ 0.33
LIG1-202ENST00000427526 ZSCAN31Q96LW9 406 aaPredicted RBP17.11■□□□□ 0.33
LIG1-202ENST00000427526 CCDC171Q6TFL3 1326 aa17.11■□□□□ 0.33
LIG1-202ENST00000427526 IGKV5-2P06315 115 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 UBE2HP62256 183 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 CCDC183Q5T5S1 534 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 LRP10Q7Z4F1 713 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 MAP4K1Q92918 833 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 SH2B1Q9NRF2 756 aaPredicted RBP17.1■□□□□ 0.33
LIG1-202ENST00000427526 CYP46A1Q9Y6A2 500 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 C5P01031 1676 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 ST3GAL1Q11201 340 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 GJB2P29033 226 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 HSP90AA2PQ14568 343 aaPredicted RBP17.1■□□□□ 0.33
LIG1-202ENST00000427526 CCDC83Q8IWF9 413 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 FAM184AQ8NB25 1140 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 BTG4Q9NY30 223 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 ATP6V1DQ9Y5K8 247 aa17.1■□□□□ 0.33
LIG1-202ENST00000427526 FAM227BQ96M60 508 aa17.09■□□□□ 0.33
LIG1-202ENST00000427526 MTMR6Q9Y217 621 aa17.09■□□□□ 0.33
LIG1-202ENST00000427526 RRP9O43818 475 aaKnown RBP17.09■□□□□ 0.33
LIG1-202ENST00000427526 UVSSAQ2YD98 709 aa17.09■□□□□ 0.33
LIG1-202ENST00000427526 HIP1O00291 1037 aa17.08■□□□□ 0.33
LIG1-202ENST00000427526 G3BP1Q13283 466 aaKnown RBP eCLIP17.08■□□□□ 0.334e-6■■■■□ 21.1
LIG1-202ENST00000427526 ME3Q16798 604 aa17.08■□□□□ 0.33
LIG1-202ENST00000427526 CREB3L3Q68CJ9 461 aa17.08■□□□□ 0.33
LIG1-202ENST00000427526 RBM8AQ9Y5S9 174 aaKnown RBP17.08■□□□□ 0.33
LIG1-202ENST00000427526 LETM1O95202 739 aaPredicted RBP17.08■□□□□ 0.32
LIG1-202ENST00000427526 ANKRD13DQ6ZTN6 518 aa17.08■□□□□ 0.32
LIG1-202ENST00000427526 MYD88Q99836 296 aa17.08■□□□□ 0.32
LIG1-202ENST00000427526 ZKSCAN1P17029 563 aaPredicted RBP17.07■□□□□ 0.32
LIG1-202ENST00000427526 NMIQ13287 307 aaPredicted RBP17.07■□□□□ 0.32
LIG1-202ENST00000427526 NKX1-1Q15270 411 aaPredicted RBP17.07■□□□□ 0.32
LIG1-202ENST00000427526 CCDC8Q9H0W5 538 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms