RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 GJD4Q96KN9 370 aaPredicted RBP12.94□□□□□ -0.34
CUX1-205ENST00000425244 IL25Q9H293 177 aa12.94□□□□□ -0.34
CUX1-205ENST00000425244 CWF19L2Q2TBE0 894 aaKnown RBP12.93□□□□□ -0.34
CUX1-205ENST00000425244 DNAJC10Q8IXB1 793 aa12.93□□□□□ -0.34
CUX1-205ENST00000425244 QTRT2Q9H974 415 aaKnown RBP12.93□□□□□ -0.34
CUX1-205ENST00000425244 PXDNLA1KZ92 1463 aa12.93□□□□□ -0.34
CUX1-205ENST00000425244 ITGB4P16144 1822 aa12.93□□□□□ -0.34
CUX1-205ENST00000425244 RAB11FIP3O75154 756 aa12.93□□□□□ -0.34
CUX1-205ENST00000425244 ZDHHC9Q9Y397 364 aa12.93□□□□□ -0.34
CUX1-205ENST00000425244 CACNA1FO60840 1977 aa12.93□□□□□ -0.34
CUX1-205ENST00000425244 WNK3Q9BYP7 1800 aa12.93□□□□□ -0.34
CUX1-205ENST00000425244 POLA2Q14181 598 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 PTF1AQ7RTS3 328 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 KIF1BPQ96EK5 621 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 LMBRD1Q9NUN5 540 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 C9orf78Q9NZ63 289 aaPredicted RBP12.92□□□□□ -0.34
CUX1-205ENST00000425244 ADCY9O60503 1353 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 BCL9O00512 1426 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 NBPF26B4DH59 902 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 KCNQ4P56696 695 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 NBPF14Q5TI25 921 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 NBPF10Q6P3W6 841 aaKnown RBP12.92□□□□□ -0.34
CUX1-205ENST00000425244 NBPF15Q8N660 670 aa12.92□□□□□ -0.34
CUX1-205ENST00000425244 DOT1LQ8TEK3 1739 aa12.91□□□□□ -0.34
CUX1-205ENST00000425244 DDX58O95786 925 aaKnown RBP12.91□□□□□ -0.34
CUX1-205ENST00000425244 KSR2Q6VAB6 950 aa12.91□□□□□ -0.34
CUX1-205ENST00000425244 TRIM44Q96DX7 344 aaPredicted RBP12.91□□□□□ -0.34
CUX1-205ENST00000425244 TRPC5Q9UL62 973 aaPredicted RBP12.91□□□□□ -0.34
CUX1-205ENST00000425244 FOXD4L6Q3SYB3 417 aaPredicted RBP12.91□□□□□ -0.34
CUX1-205ENST00000425244 FOXD4L3Q6VB84 417 aaPredicted RBP12.91□□□□□ -0.34
CUX1-205ENST00000425244 AOX1Q06278 1338 aa12.91□□□□□ -0.34
CUX1-205ENST00000425244 KCPQ6ZWJ8 1503 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 MCM2P49736 904 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 ANKRD13DQ6ZTN6 518 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 KLHL34Q8N239 644 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 PI4K2BQ8TCG2 481 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 JARID2Q92833 1246 aaPredicted RBP12.9□□□□□ -0.34
CUX1-205ENST00000425244 SLC4A9Q96Q91 983 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 ATP5J2-PTCD1G3V325 749 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 NASPP49321 788 aaPredicted RBP12.9□□□□□ -0.34
CUX1-205ENST00000425244 ANAPC15P60006 121 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 TTLL7Q6ZT98 887 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 MYD88Q99836 296 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 ZBTB3Q9H5J0 574 aa12.9□□□□□ -0.34
CUX1-205ENST00000425244 RBM27Q9P2N5 1060 aaKnown RBP12.9□□□□□ -0.34
CUX1-205ENST00000425244 CWC27Q6UX04 472 aaKnown RBP12.89□□□□□ -0.35
CUX1-205ENST00000425244 SEPT12Q8IYM1 358 aa12.89□□□□□ -0.35
CUX1-205ENST00000425244 CNTROBQ8N137 903 aa12.89□□□□□ -0.35
CUX1-205ENST00000425244 PA2G4Q9UQ80 394 aaKnown RBP12.89□□□□□ -0.35
CUX1-205ENST00000425244 ZSCAN23Q3MJ62 389 aa12.89□□□□□ -0.35
CUX1-205ENST00000425244 STARD3NLO95772 234 aa12.88□□□□□ -0.35
CUX1-205ENST00000425244 ATP6V1AP38606 617 aa12.88□□□□□ -0.35
CUX1-205ENST00000425244 HSP90AB4PQ58FF6 505 aa12.88□□□□□ -0.35
CUX1-205ENST00000425244 KIAA1211Q6ZU35 1233 aa12.88□□□□□ -0.35
CUX1-205ENST00000425244 FGD1P98174 961 aa12.87□□□□□ -0.35
CUX1-205ENST00000425244 NEXNQ0ZGT2 675 aa12.87□□□□□ -0.35
CUX1-205ENST00000425244 CLASRPQ8N2M8 674 aaKnown RBP12.87□□□□□ -0.35
CUX1-205ENST00000425244 GPT2Q8TD30 523 aa12.87□□□□□ -0.35
CUX1-205ENST00000425244 ANP32BQ92688 251 aaKnown RBP12.87□□□□□ -0.35
CUX1-205ENST00000425244 LARP6Q9BRS8 491 aaKnown RBP12.87□□□□□ -0.35
CUX1-205ENST00000425244 HSPA4P34932 840 aa12.87□□□□□ -0.35
CUX1-205ENST00000425244 LRP10Q7Z4F1 713 aa12.87□□□□□ -0.35
CUX1-205ENST00000425244 UBR2Q8IWV8 1755 aa12.87□□□□□ -0.35
CUX1-205ENST00000425244 SGSM2O43147 1006 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 CUL4AQ13619 759 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 DIAPH3Q9NSV4 1193 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 GLI3P10071 1580 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 GOLGB1Q14789 3259 aaKnown RBP12.86□□□□□ -0.35
CUX1-205ENST00000425244 A0A0U1RQG5 324 aaPredicted RBP12.86□□□□□ -0.35
CUX1-205ENST00000425244 IFIT2P09913 472 aaKnown RBP12.86□□□□□ -0.35
CUX1-205ENST00000425244 PDE4CQ08493 712 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 ZBTB1Q9Y2K1 713 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 RAD50Q92878 1312 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 LOC102724428A0A0B4J2F2 783 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 IGKV5-2P06315 115 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 SIK1P57059 783 aa12.86□□□□□ -0.35
CUX1-205ENST00000425244 ERBB4Q15303 1308 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 PAPPAQ13219 1627 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 ESPNB1AK53 854 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 GLRX3O76003 335 aaKnown RBP12.85□□□□□ -0.35
CUX1-205ENST00000425244 BRD1O95696 1058 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 TPRNQ4KMQ1 711 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 AACSQ86V21 672 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 NSFL1CQ9UNZ2 370 aaKnown RBP12.85□□□□□ -0.35
CUX1-205ENST00000425244 PALLDQ8WX93 1383 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 ALDH1L1O75891 902 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 CYP19A1P11511 503 aaPredicted RBP12.85□□□□□ -0.35
CUX1-205ENST00000425244 ZNF445P59923 1031 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 RASEFQ8IZ41 740 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 LINS1Q8NG48 757 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 TEX13AQ9BXU3 409 aaPredicted RBP12.85□□□□□ -0.35
CUX1-205ENST00000425244 SNX14Q9Y5W7 946 aa12.85□□□□□ -0.35
CUX1-205ENST00000425244 TUBGCP6Q96RT7 1819 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 CPA1P15085 419 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 INTS4Q96HW7 963 aaKnown RBP12.84□□□□□ -0.35
CUX1-205ENST00000425244 METTL22Q9BUU2 404 aaPredicted RBP12.84□□□□□ -0.35
CUX1-205ENST00000425244 LSG1Q9H089 658 aaKnown RBP12.84□□□□□ -0.35
CUX1-205ENST00000425244 SIL1Q9H173 461 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 N4BP2Q86UW6 1770 aaPredicted RBP12.84□□□□□ -0.35
CUX1-205ENST00000425244 PDIA4P13667 645 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms