RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 SSFA2P28290 1259 aa16.92■□□□□ 0.3
PRPF39-202ENST00000424478 R3HDM1Q15032 1099 aaKnown RBP16.92■□□□□ 0.3
PRPF39-202ENST00000424478 EPHA10Q5JZY3 1008 aa16.92■□□□□ 0.3
PRPF39-202ENST00000424478 CWC25Q9NXE8 425 aaPredicted RBP16.92■□□□□ 0.3
PRPF39-202ENST00000424478 BCORQ6W2J9 1755 aa16.92■□□□□ 0.3
PRPF39-202ENST00000424478 ERVV-1B6SEH8 477 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 GRM8O00222 908 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 SKAP1Q86WV1 359 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 CCDC125Q86Z20 511 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 SUCLG2Q96I99 432 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 ATP10DQ9P241 1426 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 UBTFL1P0CB47 393 aaPredicted RBP16.91■□□□□ 0.3
PRPF39-202ENST00000424478 PXDNLA1KZ92 1463 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 ZNF34Q8IZ26 560 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 TRMT112Q9UI30 125 aaKnown RBP16.91■□□□□ 0.3
PRPF39-202ENST00000424478 NFIXQ14938 502 aa16.9■□□□□ 0.3
PRPF39-202ENST00000424478 KAZALD1Q96I82 304 aa16.9■□□□□ 0.3
PRPF39-202ENST00000424478 SCN7AQ01118 1682 aa16.9■□□□□ 0.3
PRPF39-202ENST00000424478 HCLS1P14317 486 aaPredicted RBP16.9■□□□□ 0.3
PRPF39-202ENST00000424478 ANKRD36CQ5JPF3 1778 aa16.89■□□□□ 0.3
PRPF39-202ENST00000424478 IGHDP01880 384 aa16.89■□□□□ 0.3
PRPF39-202ENST00000424478 ALDH1L1O75891 902 aa16.89■□□□□ 0.29
PRPF39-202ENST00000424478 SIRT2Q8IXJ6 389 aa16.89■□□□□ 0.29
PRPF39-202ENST00000424478 N4BP2Q86UW6 1770 aaPredicted RBP16.89■□□□□ 0.29
PRPF39-202ENST00000424478 CCDC136Q96JN2 1154 aa16.89■□□□□ 0.29
PRPF39-202ENST00000424478 ZNF652Q9Y2D9 606 aa16.88■□□□□ 0.29
PRPF39-202ENST00000424478 CCDC191Q8NCU4 936 aa16.88■□□□□ 0.29
PRPF39-202ENST00000424478 BICC1Q9H694 974 aaKnown RBP16.88■□□□□ 0.29
PRPF39-202ENST00000424478 PNMA6EA0A0J9YXQ4 647 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 ZBTB7AO95365 584 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 SETDB2Q96T68 719 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 ADRA2BP18089 450 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 DDR1Q08345 913 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 APBB1O00213 710 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 GNAI2P04899 355 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 CASP7P55210 303 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 ERFEQ4G0M1 354 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 KLHDC4Q8TBB5 520 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 CHMP3Q9Y3E7 222 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 NPHP1O15259 732 aa16.86■□□□□ 0.29
PRPF39-202ENST00000424478 HSP90AB3PQ58FF7 597 aa16.86■□□□□ 0.29
PRPF39-202ENST00000424478 C3orf67Q6ZVT6 689 aa16.86■□□□□ 0.29
PRPF39-202ENST00000424478 NBPF5PQ86XG9 351 aaPredicted RBP16.85■□□□□ 0.29
PRPF39-202ENST00000424478 PPP4R2Q9NY27 417 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 H7C1W4 665 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 NTSR2O95665 410 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 GNAI3P08754 354 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 GTF2E1P29083 439 aaPredicted RBP16.85■□□□□ 0.29
PRPF39-202ENST00000424478 CEP85Q6P2H3 762 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 CLEC4GQ6UXB4 293 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 UTP14AQ9BVJ6 771 aaKnown RBP16.85■□□□□ 0.29
PRPF39-202ENST00000424478 ATF5Q9Y2D1 282 aaPredicted RBP16.85■□□□□ 0.29
PRPF39-202ENST00000424478 ABCC12Q96J65 1359 aa16.84■□□□□ 0.29
PRPF39-202ENST00000424478 MMP10P09238 476 aa16.84■□□□□ 0.29
PRPF39-202ENST00000424478 IRS4O14654 1257 aaPredicted RBP16.84■□□□□ 0.29
PRPF39-202ENST00000424478 ZBTB38Q8NAP3 1195 aaPredicted RBP16.84■□□□□ 0.29
PRPF39-202ENST00000424478 PPP1R42Q7Z4L9 355 aa16.83■□□□□ 0.29
PRPF39-202ENST00000424478 PA2G4Q9UQ80 394 aaKnown RBP16.83■□□□□ 0.29
PRPF39-202ENST00000424478 CARMIL3Q8ND23 1372 aa16.83■□□□□ 0.28
PRPF39-202ENST00000424478 TRIM28Q13263 835 aaKnown RBP16.83■□□□□ 0.28
PRPF39-202ENST00000424478 LMBR1LQ6UX01 489 aa16.83■□□□□ 0.28
PRPF39-202ENST00000424478 ANKRD44Q8N8A2 993 aa16.83■□□□□ 0.28
PRPF39-202ENST00000424478 SLC51AQ86UW1 340 aa16.83■□□□□ 0.28
PRPF39-202ENST00000424478 SRGAP3O43295 1099 aa16.82■□□□□ 0.28
PRPF39-202ENST00000424478 PCCAP05165 728 aaPredicted RBP16.82■□□□□ 0.28
PRPF39-202ENST00000424478 FOXO4P98177 505 aa16.82■□□□□ 0.28
PRPF39-202ENST00000424478 UTYO14607 1347 aa16.82■□□□□ 0.28
PRPF39-202ENST00000424478 SERPINB2P05120 415 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 TM4SF1P30408 202 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 ZNF594Q96JF6 807 aaPredicted RBP16.81■□□□□ 0.28
PRPF39-202ENST00000424478 SIL1Q9H173 461 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 SH3TC1Q8TE82 1336 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 TAF1P21675 1872 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 POLRMTO00411 1230 aaKnown RBP16.81■□□□□ 0.28
PRPF39-202ENST00000424478 FAM161AQ3B820 660 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 EXOC6BQ9Y2D4 811 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 PARP10Q53GL7 1025 aa16.8■□□□□ 0.28
PRPF39-202ENST00000424478 PRR5LQ6MZQ0 368 aa16.8■□□□□ 0.28
PRPF39-202ENST00000424478 FLAD1Q8NFF5 587 aa16.8■□□□□ 0.28
PRPF39-202ENST00000424478 WWC3Q9ULE0 1092 aa16.8■□□□□ 0.28
PRPF39-202ENST00000424478 CNBD1Q8NA66 436 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 GREM2Q9H772 168 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 COL4A1P02462 1669 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 NLGN1Q8N2Q7 840 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 SEC31BQ9NQW1 1179 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 DDX60Q8IY21 1712 aaKnown RBP16.78■□□□□ 0.28
PRPF39-202ENST00000424478 TPTE2Q6XPS3 522 aa16.78■□□□□ 0.28
PRPF39-202ENST00000424478 ATP8B2P98198 1209 aa16.77■□□□□ 0.28
PRPF39-202ENST00000424478 COL24A1Q17RW2 1714 aa16.77■□□□□ 0.28
PRPF39-202ENST00000424478 TNRC6CQ9HCJ0 1690 aaKnown RBP16.77■□□□□ 0.28
PRPF39-202ENST00000424478 SMARCA5O60264 1052 aaPredicted RBP16.77■□□□□ 0.27
PRPF39-202ENST00000424478 TTLL11Q8NHH1 800 aa16.77■□□□□ 0.27
PRPF39-202ENST00000424478 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.77■□□□□ 0.27
PRPF39-202ENST00000424478 CTSWP56202 376 aa16.76■□□□□ 0.27
PRPF39-202ENST00000424478 KLHL34Q8N239 644 aa16.76■□□□□ 0.27
PRPF39-202ENST00000424478 CHMP4BQ9H444 224 aaKnown RBP16.76■□□□□ 0.27
PRPF39-202ENST00000424478 PARP3Q9Y6F1 533 aa16.76■□□□□ 0.27
PRPF39-202ENST00000424478 CASZ1Q86V15 1759 aa16.76■□□□□ 0.27
PRPF39-202ENST00000424478 PDE8AO60658 829 aa16.75■□□□□ 0.27
PRPF39-202ENST00000424478 PUS3Q9BZE2 481 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms