RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 ATP6V1DQ9Y5K8 247 aa11.65□□□□□ -0.54
CMSS1-201ENST00000421999 DZIP1Q86YF9 867 aaKnown RBP11.65□□□□□ -0.54
CMSS1-201ENST00000421999 AIDAQ96BJ3 306 aa11.65□□□□□ -0.54
CMSS1-201ENST00000421999 SLC5A1P13866 664 aa11.65□□□□□ -0.54
CMSS1-201ENST00000421999 TRAPPC3LQ5T215 181 aa11.65□□□□□ -0.54
CMSS1-201ENST00000421999 SYAP1Q96A49 352 aaPredicted RBP11.65□□□□□ -0.54
CMSS1-201ENST00000421999 NEK4P51957 841 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 TTLL7Q6ZT98 887 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 PIGBQ92521 554 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 CCDC87Q9NVE4 849 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 BAG6P46379 1132 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 NUCB1Q02818 461 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 NCOA3Q9Y6Q9 1424 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 ATP2B1P20020 1258 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 BICC1Q9H694 974 aaKnown RBP11.64□□□□□ -0.55
CMSS1-201ENST00000421999 PARP3Q9Y6F1 533 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 LRRC7Q96NW7 1537 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 CCDC152Q4G0S7 254 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 SNRKQ9NRH2 765 aa11.64□□□□□ -0.55
CMSS1-201ENST00000421999 LOC102724428A0A0B4J2F2 783 aa11.63□□□□□ -0.55
CMSS1-201ENST00000421999 IRS4O14654 1257 aaPredicted RBP11.63□□□□□ -0.55
CMSS1-201ENST00000421999 SIK1P57059 783 aa11.63□□□□□ -0.55
CMSS1-201ENST00000421999 CCDC43Q96MW1 224 aaKnown RBP11.63□□□□□ -0.55
CMSS1-201ENST00000421999 AFF2P51816 1311 aa11.63□□□□□ -0.55
CMSS1-201ENST00000421999 PAXIP1Q6ZW49 1069 aaPredicted RBP11.63□□□□□ -0.55
CMSS1-201ENST00000421999 UTP14AQ9BVJ6 771 aaKnown RBP11.63□□□□□ -0.55
CMSS1-201ENST00000421999 DCTPP1Q9H773 170 aa11.63□□□□□ -0.55
CMSS1-201ENST00000421999 DCCP43146 1447 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 ANKRD18AQ8IVF6 992 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 KLHDC4Q8TBB5 520 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 ECHDC1Q9NTX5 307 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 USP5P45974 858 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 POLR1AO95602 1720 aaPredicted RBP11.62□□□□□ -0.55
CMSS1-201ENST00000421999 SEPT12Q8IYM1 358 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 IQSEC3Q9UPP2 1182 aaPredicted RBP11.62□□□□□ -0.55
CMSS1-201ENST00000421999 JCADQ9P266 1359 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 TTLL12Q14166 644 aaPredicted RBP11.62□□□□□ -0.55
CMSS1-201ENST00000421999 GCKRQ14397 625 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 CRACR2BQ8N4Y2 399 aaPredicted RBP11.62□□□□□ -0.55
CMSS1-201ENST00000421999 USP44Q9H0E7 712 aa11.62□□□□□ -0.55
CMSS1-201ENST00000421999 NSFL1CQ9UNZ2 370 aaKnown RBP11.62□□□□□ -0.55
CMSS1-201ENST00000421999 MINDY4BA8MYZ0 360 aa11.61□□□□□ -0.55
CMSS1-201ENST00000421999 HCLS1P14317 486 aaPredicted RBP11.61□□□□□ -0.55
CMSS1-201ENST00000421999 MAP3K12Q12852 859 aa11.61□□□□□ -0.55
CMSS1-201ENST00000421999 SMC5Q8IY18 1101 aa11.61□□□□□ -0.55
CMSS1-201ENST00000421999 PNMA6EA0A0J9YXQ4 647 aa11.61□□□□□ -0.55
CMSS1-201ENST00000421999 XBP1P17861 261 aa11.61□□□□□ -0.55
CMSS1-201ENST00000421999 NUP133Q8WUM0 1156 aa11.61□□□□□ -0.55
CMSS1-201ENST00000421999 THRAP3Q9Y2W1 955 aaKnown RBP11.61□□□□□ -0.55
CMSS1-201ENST00000421999 ABCC4O15439 1325 aa11.61□□□□□ -0.55
CMSS1-201ENST00000421999 PES1O00541 588 aaKnown RBP11.61□□□□□ -0.55
CMSS1-201ENST00000421999 POLR3DP05423 398 aaPredicted RBP11.61□□□□□ -0.55
CMSS1-201ENST00000421999 CCDC24Q8N4L8 307 aa11.61□□□□□ -0.55
CMSS1-201ENST00000421999 TRIM37O94972 964 aa11.6□□□□□ -0.55
CMSS1-201ENST00000421999 CCDC191Q8NCU4 936 aa11.6□□□□□ -0.55
CMSS1-201ENST00000421999 ZBTB1Q9Y2K1 713 aa11.6□□□□□ -0.55
CMSS1-201ENST00000421999 RXRBP28702 533 aa11.6□□□□□ -0.55
CMSS1-201ENST00000421999 HELBQ8NG08 1087 aaPredicted RBP11.6□□□□□ -0.55
CMSS1-201ENST00000421999 SUCLG2Q96I99 432 aa11.6□□□□□ -0.55
CMSS1-201ENST00000421999 PDE1AP54750 535 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 L1TD1Q5T7N2 865 aaKnown RBP11.59□□□□□ -0.55
CMSS1-201ENST00000421999 UBAC1Q9BSL1 405 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 NEURL1BA8MQ27 555 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 MPHOSPH10O00566 681 aaKnown RBP11.59□□□□□ -0.55
CMSS1-201ENST00000421999 KDRP35968 1356 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 PTMSP20962 102 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 BMP2KLQ5H9B9 411 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 ZNF772Q68DY9 489 aaPredicted RBP11.59□□□□□ -0.55
CMSS1-201ENST00000421999 NYXQ9GZU5 481 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 BRMS1Q9HCU9 246 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 CTNNA3Q9UI47 895 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 CRB1P82279 1406 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 BEND3Q5T5X7 828 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 SH3TC1Q8TE82 1336 aa11.59□□□□□ -0.55
CMSS1-201ENST00000421999 GOLIM4O00461 696 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 TCIRG1Q13488 830 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 BICD2Q8TD16 824 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 ZC3H12CQ9C0D7 883 aaKnown RBP11.58□□□□□ -0.56
CMSS1-201ENST00000421999 IFT172Q9UG01 1749 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 STK3Q13188 491 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 TTC22Q5TAA0 569 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 KRT27Q7Z3Y8 459 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 DDX49Q9Y6V7 483 aaKnown RBP11.58□□□□□ -0.56
CMSS1-201ENST00000421999 ITSN1Q15811 1721 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 IL15P40933 162 aaPredicted RBP11.58□□□□□ -0.56
CMSS1-201ENST00000421999 CRKLP46109 303 aaKnown RBP11.58□□□□□ -0.56
CMSS1-201ENST00000421999 TPM4P67936 248 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 CNBD1Q8NA66 436 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 NAPBQ9H115 298 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 MKNK2Q9HBH9 465 aa11.58□□□□□ -0.56
CMSS1-201ENST00000421999 HEG1Q9ULI3 1381 aa11.57□□□□□ -0.56
CMSS1-201ENST00000421999 F8W031 263 aaPredicted RBP11.57□□□□□ -0.56
CMSS1-201ENST00000421999 ZNF594Q96JF6 807 aaPredicted RBP11.57□□□□□ -0.56
CMSS1-201ENST00000421999 KCNQ2O43526 872 aa11.57□□□□□ -0.56
CMSS1-201ENST00000421999 SDSP20132 328 aa11.57□□□□□ -0.56
CMSS1-201ENST00000421999 ATP2B3Q16720 1220 aa11.57□□□□□ -0.56
CMSS1-201ENST00000421999 TBC1D9Q6ZT07 1266 aa11.57□□□□□ -0.56
CMSS1-201ENST00000421999 OTUD7AQ8TE49 926 aaPredicted RBP11.57□□□□□ -0.56
CMSS1-201ENST00000421999 CYP46A1Q9Y6A2 500 aa11.57□□□□□ -0.56
CMSS1-201ENST00000421999 TPD52L1Q16890 204 aaPredicted RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms