RNA–Protein interactions for RNA: ENST00000419974.2

SHMT1P1-201, Transcript of serine hydroxymethyltransferase 1 (soluble) pseudogene 1, humanhuman

BASIC

Gene SHMT1P1, Length 1,312 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P1-201ENST00000419974 ATF5Q9Y2D1 282 aaPredicted RBP17.85■□□□□ 0.45
SHMT1P1-201ENST00000419974 RTCBQ9Y3I0 505 aaKnown RBP17.85■□□□□ 0.45
SHMT1P1-201ENST00000419974 HMMRO75330 724 aa17.84■□□□□ 0.45
SHMT1P1-201ENST00000419974 NARFQ9UHQ1 456 aa17.84■□□□□ 0.45
SHMT1P1-201ENST00000419974 ZNF652Q9Y2D9 606 aa17.84■□□□□ 0.45
SHMT1P1-201ENST00000419974 SSFA2P28290 1259 aa17.83■□□□□ 0.44
SHMT1P1-201ENST00000419974 HLFQ16534 295 aa17.83■□□□□ 0.44
SHMT1P1-201ENST00000419974 PARP10Q53GL7 1025 aa17.83■□□□□ 0.44
SHMT1P1-201ENST00000419974 TFCP2L1Q9NZI6 479 aa17.83■□□□□ 0.44
SHMT1P1-201ENST00000419974 PNPLA7Q6ZV29 1317 aa17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 PCCAP05165 728 aaPredicted RBP17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 KCNQ4P56696 695 aa17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 RABL6Q3YEC7 729 aaPredicted RBP17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 SSH3Q8TE77 659 aa17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 PLA2G12BQ9BX93 195 aa17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 DCTPP1Q9H773 170 aa17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 TBC1D2BQ9UPU7 963 aa17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 CDHR2Q9BYE9 1310 aa17.82■□□□□ 0.44
SHMT1P1-201ENST00000419974 GNPATO15228 680 aa17.81■□□□□ 0.44
SHMT1P1-201ENST00000419974 POLA2Q14181 598 aa17.81■□□□□ 0.44
SHMT1P1-201ENST00000419974 NLRP10Q86W26 655 aa17.81■□□□□ 0.44
SHMT1P1-201ENST00000419974 ZBTB38Q8NAP3 1195 aaPredicted RBP17.81■□□□□ 0.44
SHMT1P1-201ENST00000419974 KAZALD1Q96I82 304 aa17.81■□□□□ 0.44
SHMT1P1-201ENST00000419974 AK7Q96M32 723 aa17.81■□□□□ 0.44
SHMT1P1-201ENST00000419974 LRRFIP2Q9Y608 721 aaKnown RBP17.81■□□□□ 0.44
SHMT1P1-201ENST00000419974 BCORQ6W2J9 1755 aa17.81■□□□□ 0.44
SHMT1P1-201ENST00000419974 ATP5J2-PTCD1G3V325 749 aa17.8■□□□□ 0.44
SHMT1P1-201ENST00000419974 TRAPPC3LQ5T215 181 aa17.8■□□□□ 0.44
SHMT1P1-201ENST00000419974 C1orf115Q9H7X2 142 aa17.8■□□□□ 0.44
SHMT1P1-201ENST00000419974 ZNF330Q9Y3S2 320 aaPredicted RBP17.8■□□□□ 0.44
SHMT1P1-201ENST00000419974 FLAD1Q8NFF5 587 aa17.79■□□□□ 0.44
SHMT1P1-201ENST00000419974 ARHGEF1Q92888 912 aaKnown RBP17.79■□□□□ 0.44
SHMT1P1-201ENST00000419974 SCN7AQ01118 1682 aa17.79■□□□□ 0.44
SHMT1P1-201ENST00000419974 ANKRD36CQ5JPF3 1778 aa17.78■□□□□ 0.44
SHMT1P1-201ENST00000419974 SUCLG2Q96I99 432 aa17.78■□□□□ 0.44
SHMT1P1-201ENST00000419974 ARXQ96QS3 562 aa17.78■□□□□ 0.44
SHMT1P1-201ENST00000419974 COL24A1Q17RW2 1714 aa17.78■□□□□ 0.44
SHMT1P1-201ENST00000419974 USP42Q9H9J4 1324 aaKnown RBP17.78■□□□□ 0.44
SHMT1P1-201ENST00000419974 DCAF8L1A6NGE4 600 aa17.77■□□□□ 0.44
SHMT1P1-201ENST00000419974 HSP90B1P14625 803 aaKnown RBP17.77■□□□□ 0.44
SHMT1P1-201ENST00000419974 SYT17Q9BSW7 474 aa17.77■□□□□ 0.44
SHMT1P1-201ENST00000419974 BCL2L12Q9HB09 334 aa17.77■□□□□ 0.44
SHMT1P1-201ENST00000419974 NOP58Q9Y2X3 529 aaKnown RBP17.77■□□□□ 0.44
SHMT1P1-201ENST00000419974 NUP98P52948 1817 aa17.77■□□□□ 0.43
SHMT1P1-201ENST00000419974 UBR3Q6ZT12 1888 aa17.77■□□□□ 0.43
SHMT1P1-201ENST00000419974 ZPR1O75312 459 aa17.76■□□□□ 0.43
SHMT1P1-201ENST00000419974 UBN2Q6ZU65 1347 aa17.76■□□□□ 0.43
SHMT1P1-201ENST00000419974 TUBGCP6Q96RT7 1819 aa17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 PNMA6EA0A0J9YXQ4 647 aa17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 RFC4P35249 363 aa17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 FOXO4P98177 505 aa17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 NUCB1Q02818 461 aa17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 UBE3BQ7Z3V4 1068 aa17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 PPP1R42Q7Z4L9 355 aa17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 AMIGO3Q86WK7 504 aa17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 COL23A1Q86Y22 540 aaPredicted RBP17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 FHDC1Q9C0D6 1143 aaPredicted RBP17.75■□□□□ 0.43
SHMT1P1-201ENST00000419974 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.74■□□□□ 0.43
SHMT1P1-201ENST00000419974 CSF1RP07333 972 aa17.74■□□□□ 0.43
SHMT1P1-201ENST00000419974 POLD1P28340 1107 aa17.74■□□□□ 0.43
SHMT1P1-201ENST00000419974 HSP90AB4PQ58FF6 505 aa17.74■□□□□ 0.43
SHMT1P1-201ENST00000419974 BICC1Q9H694 974 aaKnown RBP17.74■□□□□ 0.43
SHMT1P1-201ENST00000419974 AFDNP55196 1824 aaKnown RBP17.74■□□□□ 0.43
SHMT1P1-201ENST00000419974 SRGAP3O43295 1099 aa17.73■□□□□ 0.43
SHMT1P1-201ENST00000419974 RAB11FIP3O75154 756 aa17.73■□□□□ 0.43
SHMT1P1-201ENST00000419974 USPL1Q5W0Q7 1092 aa17.73■□□□□ 0.43
SHMT1P1-201ENST00000419974 UTP14AQ9BVJ6 771 aaKnown RBP17.73■□□□□ 0.43
SHMT1P1-201ENST00000419974 NTSR2O95665 410 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 SLC10A5Q5PT55 438 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 SUSD4Q5VX71 490 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 NYXQ9GZU5 481 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 COPRSQ9NQ92 184 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 FBXO3Q9UK99 471 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 NIP7Q9Y221 180 aaKnown RBP eCLIP17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 SH3TC1Q8TE82 1336 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 C4AP0C0L4 1744 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 EPHA10Q5JZY3 1008 aa17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 PELP1Q8IZL8 1130 aaKnown RBP17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 TRMT112Q9UI30 125 aaKnown RBP17.72■□□□□ 0.43
SHMT1P1-201ENST00000419974 GPTP24298 496 aa17.71■□□□□ 0.42
SHMT1P1-201ENST00000419974 RFX5P48382 616 aaPredicted RBP17.71■□□□□ 0.42
SHMT1P1-201ENST00000419974 CHD1LQ86WJ1 897 aa17.71■□□□□ 0.42
SHMT1P1-201ENST00000419974 SETDB2Q96T68 719 aa17.71■□□□□ 0.42
SHMT1P1-201ENST00000419974 PDZRN3Q9UPQ7 1066 aa17.71■□□□□ 0.42
SHMT1P1-201ENST00000419974 UTRNP46939 3433 aa17.7■□□□□ 0.42
SHMT1P1-201ENST00000419974 RTL9Q8NET4 1388 aa17.7■□□□□ 0.42
SHMT1P1-201ENST00000419974 RIC1Q4ADV7 1423 aa17.7■□□□□ 0.42
SHMT1P1-201ENST00000419974 PDE8AO60658 829 aa17.7■□□□□ 0.42
SHMT1P1-201ENST00000419974 GYS1P13807 737 aa17.7■□□□□ 0.42
SHMT1P1-201ENST00000419974 TM4SF1P30408 202 aa17.7■□□□□ 0.42
SHMT1P1-201ENST00000419974 TBC1D9BQ66K14 1250 aa17.7■□□□□ 0.42
SHMT1P1-201ENST00000419974 FAM89AQ96GI7 184 aa17.7■□□□□ 0.42
SHMT1P1-201ENST00000419974 IRS4O14654 1257 aaPredicted RBP17.69■□□□□ 0.42
SHMT1P1-201ENST00000419974 MSH5O43196 834 aa17.69■□□□□ 0.42
SHMT1P1-201ENST00000419974 ERC1Q8IUD2 1116 aa17.69■□□□□ 0.42
SHMT1P1-201ENST00000419974 SRP68Q9UHB9 627 aaKnown RBP17.69■□□□□ 0.42
SHMT1P1-201ENST00000419974 CARMIL3Q8ND23 1372 aa17.69■□□□□ 0.42
SHMT1P1-201ENST00000419974 LMBR1LQ6UX01 489 aa17.68■□□□□ 0.42
SHMT1P1-201ENST00000419974 TPTE2Q6XPS3 522 aa17.68■□□□□ 0.42
SHMT1P1-201ENST00000419974 NLGN1Q8N2Q7 840 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms