RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 NPM2Q86SE8 214 aaKnown RBP7.47□□□□□ -1.21
HMGB3-202ENST00000419110 ACSBG1Q96GR2 724 aa7.47□□□□□ -1.21
HMGB3-202ENST00000419110 C1orf115Q9H7X2 142 aa7.47□□□□□ -1.21
HMGB3-202ENST00000419110 PHAXQ9H814 394 aaKnown RBP7.47□□□□□ -1.21
HMGB3-202ENST00000419110 ATG3Q9NT62 314 aa7.47□□□□□ -1.21
HMGB3-202ENST00000419110 ASAP1Q9ULH1 1129 aa7.47□□□□□ -1.21
HMGB3-202ENST00000419110 HDAC5Q9UQL6 1122 aa7.47□□□□□ -1.21
HMGB3-202ENST00000419110 MAP3K2Q9Y2U5 619 aa7.47□□□□□ -1.21
HMGB3-202ENST00000419110 LRP5O75197 1615 aa7.46□□□□□ -1.21
HMGB3-202ENST00000419110 PI4KAP2A4QPH2 592 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 GNAI2P04899 355 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 KSR2Q6VAB6 950 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 RIC3Q7Z5B4 369 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 DNAJC10Q8IXB1 793 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 SEPT12Q8IYM1 358 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 PI4KAP1Q8N8J0 262 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 FBXO41Q8TF61 875 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 XAGE3Q8WTP9 111 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 MEIS3Q99687 375 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 ARAP2Q8WZ64 1704 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 COL15A1P39059 1388 aa7.46□□□□□ -1.22
HMGB3-202ENST00000419110 SNPHO15079 494 aa7.45□□□□□ -1.22
HMGB3-202ENST00000419110 RBM6P78332 1123 aaKnown RBP7.45□□□□□ -1.22
HMGB3-202ENST00000419110 AIMP1Q12904 312 aaKnown RBP7.45□□□□□ -1.22
HMGB3-202ENST00000419110 C3orf67Q6ZVT6 689 aa7.45□□□□□ -1.22
HMGB3-202ENST00000419110 LINS1Q8NG48 757 aa7.45□□□□□ -1.22
HMGB3-202ENST00000419110 ZNF330Q9Y3S2 320 aaPredicted RBP7.45□□□□□ -1.22
HMGB3-202ENST00000419110 PCDHB15Q9Y5E8 787 aa7.45□□□□□ -1.22
HMGB3-202ENST00000419110 MYH13Q9UKX3 1938 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 LOC102724428A0A0B4J2F2 783 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 ZBTB7BO15156 539 aaPredicted RBP7.44□□□□□ -1.22
HMGB3-202ENST00000419110 SIK1P57059 783 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 PDIA6Q15084 440 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 CEP85Q6P2H3 762 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 ILDR1Q86SU0 546 aaPredicted RBP7.44□□□□□ -1.22
HMGB3-202ENST00000419110 ANKRD44Q8N8A2 993 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 PLBD2Q8NHP8 589 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 GCC1Q96CN9 775 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 QTRT2Q9H974 415 aaKnown RBP7.44□□□□□ -1.22
HMGB3-202ENST00000419110 CCDC87Q9NVE4 849 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 C9orf78Q9NZ63 289 aaPredicted RBP7.44□□□□□ -1.22
HMGB3-202ENST00000419110 USP16Q9Y5T5 823 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 CNTNAP4Q9C0A0 1308 aa7.44□□□□□ -1.22
HMGB3-202ENST00000419110 MYH7P12883 1935 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 NBPF26B4DH59 902 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 GRM8O00222 908 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 ATP6V1AP38606 617 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 PIP4K2AP48426 406 aaPredicted RBP7.43□□□□□ -1.22
HMGB3-202ENST00000419110 HSP90AB3PQ58FF7 597 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 BEND3Q5T5X7 828 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 NBPF14Q5TI25 921 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 NBPF10Q6P3W6 841 aaKnown RBP7.43□□□□□ -1.22
HMGB3-202ENST00000419110 ANKRD13DQ6ZTN6 518 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 COPS6Q7L5N1 327 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 KRT27Q7Z3Y8 459 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 LRP10Q7Z4F1 713 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 RPAP2Q8IXW5 612 aaPredicted RBP7.43□□□□□ -1.22
HMGB3-202ENST00000419110 SMC5Q8IY18 1101 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 NBPF15Q8N660 670 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 MYD88Q99836 296 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 METTL22Q9BUU2 404 aaPredicted RBP7.43□□□□□ -1.22
HMGB3-202ENST00000419110 ZBTB1Q9Y2K1 713 aa7.43□□□□□ -1.22
HMGB3-202ENST00000419110 LRRFIP2Q9Y608 721 aaKnown RBP7.43□□□□□ -1.22
HMGB3-202ENST00000419110 NEURL1BA8MQ27 555 aa7.42□□□□□ -1.22
HMGB3-202ENST00000419110 ONECUT3O60422 494 aaPredicted RBP7.42□□□□□ -1.22
HMGB3-202ENST00000419110 A1BGP04217 495 aa7.42□□□□□ -1.22
HMGB3-202ENST00000419110 CYP19A1P11511 503 aaPredicted RBP7.42□□□□□ -1.22
HMGB3-202ENST00000419110 IL6STP40189 918 aaPredicted RBP7.42□□□□□ -1.22
HMGB3-202ENST00000419110 RGS3P49796 1198 aa7.42□□□□□ -1.22
HMGB3-202ENST00000419110 FAM196AQ6ZSG2 479 aa7.42□□□□□ -1.22
HMGB3-202ENST00000419110 CDAN1Q8IWY9 1227 aa7.42□□□□□ -1.22
HMGB3-202ENST00000419110 ZBTB3Q9H5J0 574 aa7.42□□□□□ -1.22
HMGB3-202ENST00000419110 MAP3K15Q6ZN16 1313 aa7.42□□□□□ -1.22
HMGB3-202ENST00000419110 KCNQ2O43526 872 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 IGHDP01880 384 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 HMGB2P26583 209 aaKnown RBP7.41□□□□□ -1.22
HMGB3-202ENST00000419110 CRKLP46109 303 aaKnown RBP7.41□□□□□ -1.22
HMGB3-202ENST00000419110 CWF19L2Q2TBE0 894 aaKnown RBP7.41□□□□□ -1.22
HMGB3-202ENST00000419110 DPY19L2Q6NUT2 758 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 TTLL7Q6ZT98 887 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 SLC4A9Q96Q91 983 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 TMEM121BQ9BXQ6 578 aaPredicted RBP7.41□□□□□ -1.22
HMGB3-202ENST00000419110 CWC25Q9NXE8 425 aaPredicted RBP7.41□□□□□ -1.22
HMGB3-202ENST00000419110 CCNL1Q9UK58 526 aaPredicted RBP7.41□□□□□ -1.22
HMGB3-202ENST00000419110 PDZRN3Q9UPQ7 1066 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 ZNF652Q9Y2D9 606 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 UTYO14607 1347 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 TNRC6CQ9HCJ0 1690 aaKnown RBP7.41□□□□□ -1.22
HMGB3-202ENST00000419110 CACNA1SQ13698 1873 aa7.41□□□□□ -1.22
HMGB3-202ENST00000419110 A0A087WZG4 1122 aa7.4□□□□□ -1.22
HMGB3-202ENST00000419110 IGKV5-2P06315 115 aa7.4□□□□□ -1.22
HMGB3-202ENST00000419110 ITPK1Q13572 414 aa7.4□□□□□ -1.22
HMGB3-202ENST00000419110 GCKRQ14397 625 aa7.4□□□□□ -1.22
HMGB3-202ENST00000419110 DZIP3Q86Y13 1208 aaKnown RBP7.4□□□□□ -1.22
HMGB3-202ENST00000419110 ARXQ96QS3 562 aa7.4□□□□□ -1.22
HMGB3-202ENST00000419110 BCL11BQ9C0K0 894 aaPredicted RBP7.4□□□□□ -1.22
HMGB3-202ENST00000419110 USP44Q9H0E7 712 aa7.4□□□□□ -1.22
HMGB3-202ENST00000419110 G3V3G9 751 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 SRGAP3O43295 1099 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 RXRBP28702 533 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms