RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 ANKRD13DQ6ZTN6 518 aa21.33■■□□□ 1.01
LINC00404-201ENST00000418660 C8orf58Q8NAV2 365 aa21.33■■□□□ 1.01
LINC00404-201ENST00000418660 TNRC6CQ9HCJ0 1690 aaKnown RBP21.33■■□□□ 1
LINC00404-201ENST00000418660 RNF123Q5XPI4 1314 aa21.32■■□□□ 1
LINC00404-201ENST00000418660 SLC10A5Q5PT55 438 aa21.32■■□□□ 1
LINC00404-201ENST00000418660 NLRP10Q86W26 655 aa21.32■■□□□ 1
LINC00404-201ENST00000418660 CHMP4AQ9BY43 222 aa21.32■■□□□ 1
LINC00404-201ENST00000418660 TAOK3Q9H2K8 898 aa21.32■■□□□ 1
LINC00404-201ENST00000418660 IL16Q14005 1332 aa21.31■■□□□ 1
LINC00404-201ENST00000418660 CACNA1SQ13698 1873 aa21.31■■□□□ 1
LINC00404-201ENST00000418660 FER1L6Q2WGJ9 1857 aa21.31■■□□□ 1
LINC00404-201ENST00000418660 HOXA10P31260 410 aaPredicted RBP21.31■■□□□ 1
LINC00404-201ENST00000418660 CCDC93Q567U6 631 aa21.31■■□□□ 1
LINC00404-201ENST00000418660 NMRK2Q9NPI5 230 aa21.31■■□□□ 1
LINC00404-201ENST00000418660 RPGRQ92834 1020 aaKnown RBP21.3■■□□□ 1
LINC00404-201ENST00000418660 ANKRD36CQ5JPF3 1778 aa21.3■■□□□ 1
LINC00404-201ENST00000418660 NLRP3Q96P20 1036 aa21.29■■□□□ 1
LINC00404-201ENST00000418660 CCDC30Q5VVM6 783 aa21.28■■□□□ 1
LINC00404-201ENST00000418660 RTKN2Q8IZC4 609 aa21.28■■□□□ 1
LINC00404-201ENST00000418660 TSR2Q969E8 191 aaKnown RBP21.28■■□□□ 1
LINC00404-201ENST00000418660 RBM17Q96I25 401 aaKnown RBP21.28■■□□□ 1
LINC00404-201ENST00000418660 CRAMP1Q96RY5 1269 aa21.28■■□□□ 1
LINC00404-201ENST00000418660 GLTPD2A6NH11 291 aa21.27■■□□□ 1
LINC00404-201ENST00000418660 C3orf67Q6ZVT6 689 aa21.27■■□□□ 1
LINC00404-201ENST00000418660 FAM9BQ8IZU0 186 aa21.27■■□□□ 1
LINC00404-201ENST00000418660 TSPYL6Q8N831 410 aa21.27■■□□□ 1
LINC00404-201ENST00000418660 ISCA1Q9BUE6 129 aa21.27■■□□□ 1
LINC00404-201ENST00000418660 PHAXQ9H814 394 aaKnown RBP21.27■■□□□ 1
LINC00404-201ENST00000418660 TRMT112Q9UI30 125 aaKnown RBP21.27■■□□□ 1
LINC00404-201ENST00000418660 TOMM70O94826 608 aa21.26■□□□□ 0.99
LINC00404-201ENST00000418660 FKBP4Q02790 459 aaKnown RBP eCLIP21.26■□□□□ 0.99
LINC00404-201ENST00000418660 OLFM4Q6UX06 510 aa21.26■□□□□ 0.99
LINC00404-201ENST00000418660 WDR63Q8IWG1 891 aa21.26■□□□□ 0.99
LINC00404-201ENST00000418660 CCDC88AQ3V6T2 1871 aa21.26■□□□□ 0.99
LINC00404-201ENST00000418660 SH3TC1Q8TE82 1336 aa21.26■□□□□ 0.99
LINC00404-201ENST00000418660 GOLGA2Q08379 1002 aa21.25■□□□□ 0.99
LINC00404-201ENST00000418660 CC2D2BQ6DHV5 1058 aa21.25■□□□□ 0.99
LINC00404-201ENST00000418660 RIC3Q7Z5B4 369 aa21.25■□□□□ 0.99
LINC00404-201ENST00000418660 TIAM2Q8IVF5 1701 aa21.25■□□□□ 0.99
LINC00404-201ENST00000418660 RRAGCQ9HB90 399 aa21.25■□□□□ 0.99
LINC00404-201ENST00000418660 SALL2Q9Y467 1007 aaPredicted RBP21.25■□□□□ 0.99
LINC00404-201ENST00000418660 ATP5J2-PTCD1G3V325 749 aa21.24■□□□□ 0.99
LINC00404-201ENST00000418660 TRIM28Q13263 835 aaKnown RBP21.24■□□□□ 0.99
LINC00404-201ENST00000418660 DPY19L2Q6NUT2 758 aa21.24■□□□□ 0.99
LINC00404-201ENST00000418660 SYNE4Q8N205 404 aa21.24■□□□□ 0.99
LINC00404-201ENST00000418660 HCLS1P14317 486 aaPredicted RBP21.23■□□□□ 0.99
LINC00404-201ENST00000418660 TWISTNBQ3B726 338 aaPredicted RBP21.23■□□□□ 0.99
LINC00404-201ENST00000418660 C16orf71Q8IYS4 520 aaPredicted RBP21.23■□□□□ 0.99
LINC00404-201ENST00000418660 DICER1Q9UPY3 1922 aaKnown RBP21.22■□□□□ 0.99
LINC00404-201ENST00000418660 GRIPAP1Q4V328 841 aa21.22■□□□□ 0.99
LINC00404-201ENST00000418660 SNED1Q8TER0 1413 aa21.21■□□□□ 0.99
LINC00404-201ENST00000418660 PPEF1O14829 653 aaPredicted RBP21.21■□□□□ 0.99
LINC00404-201ENST00000418660 DDX58O95786 925 aaKnown RBP21.21■□□□□ 0.99
LINC00404-201ENST00000418660 PSMD1Q99460 953 aa21.21■□□□□ 0.99
LINC00404-201ENST00000418660 STK31Q9BXU1 1019 aa21.21■□□□□ 0.99
LINC00404-201ENST00000418660 ZNF277Q9NRM2 450 aaPredicted RBP21.21■□□□□ 0.99
LINC00404-201ENST00000418660 VEGFAP15692 232 aaPredicted RBP21.2■□□□□ 0.98
LINC00404-201ENST00000418660 RBM46Q8TBY0 533 aaKnown RBP21.2■□□□□ 0.98
LINC00404-201ENST00000418660 ZNF428Q96B54 188 aa21.2■□□□□ 0.98
LINC00404-201ENST00000418660 FAM89AQ96GI7 184 aa21.2■□□□□ 0.98
LINC00404-201ENST00000418660 FANCIQ9NVI1 1328 aa21.2■□□□□ 0.98
LINC00404-201ENST00000418660 HSPA6P17066 643 aa21.19■□□□□ 0.98
LINC00404-201ENST00000418660 ABCC4O15439 1325 aa21.19■□□□□ 0.98
LINC00404-201ENST00000418660 TCERG1O14776 1098 aaKnown RBP21.18■□□□□ 0.98
LINC00404-201ENST00000418660 BBOX1O75936 387 aa21.18■□□□□ 0.98
LINC00404-201ENST00000418660 IARSP41252 1262 aaKnown RBP21.18■□□□□ 0.98
LINC00404-201ENST00000418660 DDX46Q7L014 1031 aaKnown RBP21.18■□□□□ 0.98
LINC00404-201ENST00000418660 MYD88Q99836 296 aa21.18■□□□□ 0.98
LINC00404-201ENST00000418660 METTL22Q9BUU2 404 aaPredicted RBP21.18■□□□□ 0.98
LINC00404-201ENST00000418660 TMX4Q9H1E5 349 aaPredicted RBP21.18■□□□□ 0.98
LINC00404-201ENST00000418660 ATP6V0A2Q9Y487 856 aa21.18■□□□□ 0.98
LINC00404-201ENST00000418660 CCDC191Q8NCU4 936 aa21.17■□□□□ 0.98
LINC00404-201ENST00000418660 LAMB2P55268 1798 aa21.17■□□□□ 0.98
LINC00404-201ENST00000418660 SF3B3Q15393 1217 aaKnown RBP21.16■□□□□ 0.98
LINC00404-201ENST00000418660 KSR2Q6VAB6 950 aa21.16■□□□□ 0.98
LINC00404-201ENST00000418660 ZBTB38Q8NAP3 1195 aaPredicted RBP21.16■□□□□ 0.98
LINC00404-201ENST00000418660 MAP3K2Q9Y2U5 619 aa21.16■□□□□ 0.98
LINC00404-201ENST00000418660 WDR90Q96KV7 1748 aa21.15■□□□□ 0.98
LINC00404-201ENST00000418660 POTECB2RU33 542 aa21.15■□□□□ 0.98
LINC00404-201ENST00000418660 IRS4O14654 1257 aaPredicted RBP21.15■□□□□ 0.98
LINC00404-201ENST00000418660 DDNO94850 711 aaPredicted RBP21.15■□□□□ 0.98
LINC00404-201ENST00000418660 SLC4A2P04920 1241 aa21.15■□□□□ 0.98
LINC00404-201ENST00000418660 EXOSC9Q06265 439 aaKnown RBP21.15■□□□□ 0.98
LINC00404-201ENST00000418660 FSTL1Q12841 308 aa21.15■□□□□ 0.98
LINC00404-201ENST00000418660 GRAPQ13588 217 aa21.15■□□□□ 0.98
LINC00404-201ENST00000418660 SP8Q8IXZ3 490 aa21.15■□□□□ 0.98
LINC00404-201ENST00000418660 GRAPLQ8TC17 118 aaPredicted RBP21.15■□□□□ 0.98
LINC00404-201ENST00000418660 SPINK5Q9NQ38 1064 aaPredicted RBP21.15■□□□□ 0.98
LINC00404-201ENST00000418660 PI4KAP2A4QPH2 592 aa21.14■□□□□ 0.97
LINC00404-201ENST00000418660 VAMP4O75379 141 aa21.14■□□□□ 0.97
LINC00404-201ENST00000418660 RTL5Q5HYW3 569 aaPredicted RBP21.14■□□□□ 0.97
LINC00404-201ENST00000418660 SLC51AQ86UW1 340 aa21.14■□□□□ 0.97
LINC00404-201ENST00000418660 PI4KAP1Q8N8J0 262 aa21.14■□□□□ 0.97
LINC00404-201ENST00000418660 MYH16Q9H6N6 1097 aa21.14■□□□□ 0.97
LINC00404-201ENST00000418660 CWC25Q9NXE8 425 aaPredicted RBP21.14■□□□□ 0.97
LINC00404-201ENST00000418660 DDX60Q8IY21 1712 aaKnown RBP21.14■□□□□ 0.97
LINC00404-201ENST00000418660 PCCAP05165 728 aaPredicted RBP21.13■□□□□ 0.97
LINC00404-201ENST00000418660 HSP90B1P14625 803 aaKnown RBP21.13■□□□□ 0.97
LINC00404-201ENST00000418660 G2E3Q7L622 706 aa21.13■□□□□ 0.97
LINC00404-201ENST00000418660 TMC4Q7Z404 712 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms