RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 PCDHB15Q9Y5E8 787 aa17.9■□□□□ 0.46
SF3B1-204ENST00000414963 NUP98P52948 1817 aa17.89■□□□□ 0.45
SF3B1-204ENST00000414963 PCCAP05165 728 aaPredicted RBP17.89■□□□□ 0.45
SF3B1-204ENST00000414963 GYS1P13807 737 aa17.89■□□□□ 0.45
SF3B1-204ENST00000414963 GPTP24298 496 aa17.89■□□□□ 0.45
SF3B1-204ENST00000414963 ZBTB38Q8NAP3 1195 aaPredicted RBP17.89■□□□□ 0.45
SF3B1-204ENST00000414963 UBN2Q6ZU65 1347 aa17.89■□□□□ 0.45
SF3B1-204ENST00000414963 PNPLA7Q6ZV29 1317 aa17.89■□□□□ 0.45
SF3B1-204ENST00000414963 ILDR2Q71H61 639 aa17.88■□□□□ 0.45
SF3B1-204ENST00000414963 RPAP2Q8IXW5 612 aaPredicted RBP17.88■□□□□ 0.45
SF3B1-204ENST00000414963 NIP7Q9Y221 180 aaKnown RBP eCLIP17.88■□□□□ 0.45
SF3B1-204ENST00000414963 C4AP0C0L4 1744 aa17.88■□□□□ 0.45
SF3B1-204ENST00000414963 ANKRD36CQ5JPF3 1778 aa17.87■□□□□ 0.45
SF3B1-204ENST00000414963 TBC1D9BQ66K14 1250 aa17.87■□□□□ 0.45
SF3B1-204ENST00000414963 HDAC1Q13547 482 aaPredicted RBP17.86■□□□□ 0.45
SF3B1-204ENST00000414963 SUSD4Q5VX71 490 aa17.86■□□□□ 0.45
SF3B1-204ENST00000414963 UBE3BQ7Z3V4 1068 aa17.86■□□□□ 0.45
SF3B1-204ENST00000414963 PPP1R42Q7Z4L9 355 aa17.86■□□□□ 0.45
SF3B1-204ENST00000414963 ANKRD44Q8N8A2 993 aa17.86■□□□□ 0.45
SF3B1-204ENST00000414963 KAZALD1Q96I82 304 aa17.86■□□□□ 0.45
SF3B1-204ENST00000414963 SETDB2Q96T68 719 aa17.86■□□□□ 0.45
SF3B1-204ENST00000414963 UTP14AQ9BVJ6 771 aaKnown RBP17.86■□□□□ 0.45
SF3B1-204ENST00000414963 C1orf115Q9H7X2 142 aa17.86■□□□□ 0.45
SF3B1-204ENST00000414963 LRRFIP2Q9Y608 721 aaKnown RBP17.86■□□□□ 0.45
SF3B1-204ENST00000414963 CDHR2Q9BYE9 1310 aa17.86■□□□□ 0.45
SF3B1-204ENST00000414963 TM4SF1P30408 202 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 MTX1Q13505 466 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 QSER1Q2KHR3 1735 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 CEP85Q6P2H3 762 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 SIRT2Q8IXJ6 389 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 NLGN1Q8N2Q7 840 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 SUCLG2Q96I99 432 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 CCDC136Q96JN2 1154 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 PLA2G12BQ9BX93 195 aa17.85■□□□□ 0.45
SF3B1-204ENST00000414963 TRMT112Q9UI30 125 aaKnown RBP17.85■□□□□ 0.45
SF3B1-204ENST00000414963 NTSR2O95665 410 aa17.84■□□□□ 0.45
SF3B1-204ENST00000414963 ATP8B2P98198 1209 aa17.84■□□□□ 0.45
SF3B1-204ENST00000414963 NFIXQ14938 502 aa17.84■□□□□ 0.45
SF3B1-204ENST00000414963 AFDNP55196 1824 aaKnown RBP17.84■□□□□ 0.45
SF3B1-204ENST00000414963 TUBGCP6Q96RT7 1819 aa17.84■□□□□ 0.45
SF3B1-204ENST00000414963 RABL6Q3YEC7 729 aaPredicted RBP17.83■□□□□ 0.44
SF3B1-204ENST00000414963 FAM89AQ96GI7 184 aa17.83■□□□□ 0.44
SF3B1-204ENST00000414963 NYXQ9GZU5 481 aa17.83■□□□□ 0.44
SF3B1-204ENST00000414963 RWDD1Q9H446 243 aaPredicted RBP17.83■□□□□ 0.44
SF3B1-204ENST00000414963 SH3TC1Q8TE82 1336 aa17.82■□□□□ 0.44
SF3B1-204ENST00000414963 HSP90B1P14625 803 aaKnown RBP17.82■□□□□ 0.44
SF3B1-204ENST00000414963 FOXO4P98177 505 aa17.82■□□□□ 0.44
SF3B1-204ENST00000414963 SLC10A5Q5PT55 438 aa17.82■□□□□ 0.44
SF3B1-204ENST00000414963 JARID2Q92833 1246 aaPredicted RBP17.82■□□□□ 0.44
SF3B1-204ENST00000414963 CARMIL3Q8ND23 1372 aa17.81■□□□□ 0.44
SF3B1-204ENST00000414963 MSH5O43196 834 aa17.81■□□□□ 0.44
SF3B1-204ENST00000414963 IGHDP01880 384 aa17.81■□□□□ 0.44
SF3B1-204ENST00000414963 EPHA10Q5JZY3 1008 aa17.81■□□□□ 0.44
SF3B1-204ENST00000414963 B4GALNT3Q6L9W6 998 aa17.81■□□□□ 0.44
SF3B1-204ENST00000414963 TPTE2Q6XPS3 522 aa17.81■□□□□ 0.44
SF3B1-204ENST00000414963 BICDL1Q6ZP65 573 aa17.81■□□□□ 0.44
SF3B1-204ENST00000414963 SLC16A10Q8TF71 515 aa17.81■□□□□ 0.44
SF3B1-204ENST00000414963 BICC1Q9H694 974 aaKnown RBP17.81■□□□□ 0.44
SF3B1-204ENST00000414963 KDM2BQ8NHM5 1336 aa17.8■□□□□ 0.44
SF3B1-204ENST00000414963 IRS4O14654 1257 aaPredicted RBP17.8■□□□□ 0.44
SF3B1-204ENST00000414963 HMMRO75330 724 aa17.8■□□□□ 0.44
SF3B1-204ENST00000414963 POLA2Q14181 598 aa17.8■□□□□ 0.44
SF3B1-204ENST00000414963 SYNE4Q8N205 404 aa17.8■□□□□ 0.44
SF3B1-204ENST00000414963 SSH3Q8TE77 659 aa17.8■□□□□ 0.44
SF3B1-204ENST00000414963 COL24A1Q17RW2 1714 aa17.8■□□□□ 0.44
SF3B1-204ENST00000414963 PDE8AO60658 829 aa17.79■□□□□ 0.44
SF3B1-204ENST00000414963 CSF1RP07333 972 aa17.79■□□□□ 0.44
SF3B1-204ENST00000414963 RTL5Q5HYW3 569 aaPredicted RBP17.79■□□□□ 0.44
SF3B1-204ENST00000414963 NBPF5PQ86XG9 351 aaPredicted RBP17.79■□□□□ 0.44
SF3B1-204ENST00000414963 PNMA6EA0A0J9YXQ4 647 aa17.78■□□□□ 0.44
SF3B1-204ENST00000414963 CENPQQ7L2Z9 268 aaPredicted RBP17.78■□□□□ 0.44
SF3B1-204ENST00000414963 POLRMTO00411 1230 aaKnown RBP17.77■□□□□ 0.44
SF3B1-204ENST00000414963 SERPINB2P05120 415 aa17.77■□□□□ 0.44
SF3B1-204ENST00000414963 DDR1Q08345 913 aa17.77■□□□□ 0.44
SF3B1-204ENST00000414963 ERFEQ4G0M1 354 aa17.77■□□□□ 0.44
SF3B1-204ENST00000414963 LMBR1LQ6UX01 489 aa17.77■□□□□ 0.44
SF3B1-204ENST00000414963 DCTPP1Q9H773 170 aa17.77■□□□□ 0.44
SF3B1-204ENST00000414963 FAM177BA6PVY3 158 aa17.76■□□□□ 0.43
SF3B1-204ENST00000414963 SRGAP3O43295 1099 aa17.76■□□□□ 0.43
SF3B1-204ENST00000414963 NUTM1Q86Y26 1132 aa17.76■□□□□ 0.43
SF3B1-204ENST00000414963 SMC5Q8IY18 1101 aa17.76■□□□□ 0.43
SF3B1-204ENST00000414963 TTLL11Q8NHH1 800 aa17.76■□□□□ 0.43
SF3B1-204ENST00000414963 RIC1Q4ADV7 1423 aa17.75■□□□□ 0.43
SF3B1-204ENST00000414963 HCLS1P14317 486 aaPredicted RBP17.75■□□□□ 0.43
SF3B1-204ENST00000414963 GTF2E1P29083 439 aaPredicted RBP17.75■□□□□ 0.43
SF3B1-204ENST00000414963 CTSWP56202 376 aa17.75■□□□□ 0.43
SF3B1-204ENST00000414963 GCC1Q96CN9 775 aa17.75■□□□□ 0.43
SF3B1-204ENST00000414963 NOP58Q9Y2X3 529 aaKnown RBP17.75■□□□□ 0.43
SF3B1-204ENST00000414963 MMP10P09238 476 aa17.74■□□□□ 0.43
SF3B1-204ENST00000414963 RFX5P48382 616 aaPredicted RBP17.74■□□□□ 0.43
SF3B1-204ENST00000414963 SF3B3Q15393 1217 aaKnown RBP17.74■□□□□ 0.43
SF3B1-204ENST00000414963 PRR5LQ6MZQ0 368 aa17.74■□□□□ 0.43
SF3B1-204ENST00000414963 CNBD1Q8NA66 436 aa17.74■□□□□ 0.43
SF3B1-204ENST00000414963 PDGFDQ9GZP0 370 aaPredicted RBP17.74■□□□□ 0.43
SF3B1-204ENST00000414963 RTL9Q8NET4 1388 aa17.74■□□□□ 0.43
SF3B1-204ENST00000414963 COPRSQ9NQ92 184 aa17.73■□□□□ 0.43
SF3B1-204ENST00000414963 PARP3Q9Y6F1 533 aa17.73■□□□□ 0.43
SF3B1-204ENST00000414963 ABCC12Q96J65 1359 aa17.73■□□□□ 0.43
SF3B1-204ENST00000414963 ST5P78524 1137 aa17.71■□□□□ 0.43
SF3B1-204ENST00000414963 PTPN12Q05209 780 aaKnown RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms