RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 FMR1Q06787 632 aaKnown RBP eCLIP12.81□□□□□ -0.36
RFFL-203ENST00000413582 HLFQ16534 295 aa12.81□□□□□ -0.36
RFFL-203ENST00000413582 CAPNS2Q96L46 248 aa12.81□□□□□ -0.36
RFFL-203ENST00000413582 KDM3BQ7LBC6 1761 aa12.8□□□□□ -0.36
RFFL-203ENST00000413582 LMOD1P29536 600 aaPredicted RBP12.8□□□□□ -0.36
RFFL-203ENST00000413582 EIF6P56537 245 aaKnown RBP12.8□□□□□ -0.36
RFFL-203ENST00000413582 MCM10Q7L590 875 aa12.8□□□□□ -0.36
RFFL-203ENST00000413582 SLC51AQ86UW1 340 aa12.8□□□□□ -0.36
RFFL-203ENST00000413582 GJA3Q9Y6H8 435 aa12.8□□□□□ -0.36
RFFL-203ENST00000413582 EPS15P42566 896 aa12.79□□□□□ -0.36
RFFL-203ENST00000413582 ECE1P42892 770 aa12.79□□□□□ -0.36
RFFL-203ENST00000413582 CC2D2BQ6DHV5 1058 aa12.79□□□□□ -0.36
RFFL-203ENST00000413582 CYP4F22Q6NT55 531 aa12.79□□□□□ -0.36
RFFL-203ENST00000413582 PAXIP1Q6ZW49 1069 aaPredicted RBP12.79□□□□□ -0.36
RFFL-203ENST00000413582 PDE4DIPQ5VU43 2346 aa12.79□□□□□ -0.36
RFFL-203ENST00000413582 IBTKQ9P2D0 1353 aaPredicted RBP12.79□□□□□ -0.36
RFFL-203ENST00000413582 TRAF5O00463 557 aa12.78□□□□□ -0.36
RFFL-203ENST00000413582 GTF2E1P29083 439 aaPredicted RBP12.78□□□□□ -0.36
RFFL-203ENST00000413582 CST9Q5W186 159 aa12.78□□□□□ -0.36
RFFL-203ENST00000413582 NUTM1Q86Y26 1132 aa12.78□□□□□ -0.36
RFFL-203ENST00000413582 GPR101Q96P66 508 aaPredicted RBP12.78□□□□□ -0.36
RFFL-203ENST00000413582 CASP8AP2Q9UKL3 1982 aa12.78□□□□□ -0.36
RFFL-203ENST00000413582 CCDC85CA6NKD9 419 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 HOXA10P31260 410 aaPredicted RBP12.77□□□□□ -0.37
RFFL-203ENST00000413582 RGS19P49795 217 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 GRM1Q13255 1194 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 CNGB1Q14028 1251 aaPredicted RBP12.77□□□□□ -0.37
RFFL-203ENST00000413582 DCTN1Q14203 1278 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 USP50Q70EL3 339 aaPredicted RBP12.77□□□□□ -0.37
RFFL-203ENST00000413582 LARGE2Q8N3Y3 721 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 RTF1Q92541 710 aaKnown RBP12.77□□□□□ -0.37
RFFL-203ENST00000413582 BEGAINQ9BUH8 593 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 NYXQ9GZU5 481 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 TLL2Q9Y6L7 1015 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 UBN2Q6ZU65 1347 aa12.77□□□□□ -0.37
RFFL-203ENST00000413582 DLG5Q8TDM6 1919 aa12.76□□□□□ -0.37
RFFL-203ENST00000413582 MLLT1Q03111 559 aaPredicted RBP12.76□□□□□ -0.37
RFFL-203ENST00000413582 RPGRQ92834 1020 aaKnown RBP12.76□□□□□ -0.37
RFFL-203ENST00000413582 TSKSQ9UJT2 592 aa12.76□□□□□ -0.37
RFFL-203ENST00000413582 MAP3K15Q6ZN16 1313 aa12.76□□□□□ -0.37
RFFL-203ENST00000413582 ERVV-1B6SEH8 477 aa12.75□□□□□ -0.37
RFFL-203ENST00000413582 PPEF1O14829 653 aaPredicted RBP12.75□□□□□ -0.37
RFFL-203ENST00000413582 AOC2O75106 756 aa12.75□□□□□ -0.37
RFFL-203ENST00000413582 GRIPAP1Q4V328 841 aa12.75□□□□□ -0.37
RFFL-203ENST00000413582 NIM1KQ8IY84 436 aa12.75□□□□□ -0.37
RFFL-203ENST00000413582 CFAP53Q96M91 514 aa12.75□□□□□ -0.37
RFFL-203ENST00000413582 HTATSF1O43719 755 aaKnown RBP12.74□□□□□ -0.37
RFFL-203ENST00000413582 MAP2K2P36507 400 aa12.74□□□□□ -0.37
RFFL-203ENST00000413582 TTLL7Q6ZT98 887 aa12.74□□□□□ -0.37
RFFL-203ENST00000413582 C3orf67Q6ZVT6 689 aa12.74□□□□□ -0.37
RFFL-203ENST00000413582 SAPCD2Q86UD0 394 aa12.74□□□□□ -0.37
RFFL-203ENST00000413582 CRAMP1Q96RY5 1269 aa12.74□□□□□ -0.37
RFFL-203ENST00000413582 GPRC5DQ9NZD1 345 aa12.74□□□□□ -0.37
RFFL-203ENST00000413582 LAMB2P55268 1798 aa12.74□□□□□ -0.37
RFFL-203ENST00000413582 ZBTB22O15209 634 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 PPIP5K2O43314 1243 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 NTSR2O95665 410 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 U2AF1L5P0DN76 240 aaPredicted RBP12.73□□□□□ -0.37
RFFL-203ENST00000413582 GPTP24298 496 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 U2AF1Q01081 240 aaKnown RBP eCLIP12.73□□□□□ -0.37
RFFL-203ENST00000413582 TAF7Q15545 349 aaPredicted RBP12.73□□□□□ -0.37
RFFL-203ENST00000413582 AOC3Q16853 763 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 SUSD4Q5VX71 490 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 NGEFQ8N5V2 710 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 ADARB2Q9NS39 739 aaKnown RBP12.73□□□□□ -0.37
RFFL-203ENST00000413582 MIS18AQ9NYP9 233 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 NUDCQ9Y266 331 aa12.73□□□□□ -0.37
RFFL-203ENST00000413582 TCERG1O14776 1098 aaKnown RBP12.72□□□□□ -0.37
RFFL-203ENST00000413582 CA12O43570 354 aa12.72□□□□□ -0.37
RFFL-203ENST00000413582 CELF2O95319 508 aaKnown RBP12.72□□□□□ -0.37
RFFL-203ENST00000413582 KIF6Q6ZMV9 814 aa12.72□□□□□ -0.37
RFFL-203ENST00000413582 RBM17Q96I25 401 aaKnown RBP12.72□□□□□ -0.37
RFFL-203ENST00000413582 HHIPL1Q96JK4 782 aa12.72□□□□□ -0.37
RFFL-203ENST00000413582 MCOLN1Q9GZU1 580 aa12.72□□□□□ -0.37
RFFL-203ENST00000413582 ZBTB3Q9H5J0 574 aa12.72□□□□□ -0.37
RFFL-203ENST00000413582 TNRC18O15417 2968 aaPredicted RBP12.71□□□□□ -0.37
RFFL-203ENST00000413582 BRPF1P55201 1214 aaPredicted RBP12.71□□□□□ -0.37
RFFL-203ENST00000413582 ZNF34Q8IZ26 560 aa12.71□□□□□ -0.37
RFFL-203ENST00000413582 GLIS2Q9BZE0 524 aaPredicted RBP12.71□□□□□ -0.37
RFFL-203ENST00000413582 ANKRD36CQ5JPF3 1778 aa12.71□□□□□ -0.38
RFFL-203ENST00000413582 CDHR2Q9BYE9 1310 aa12.7□□□□□ -0.38
RFFL-203ENST00000413582 DUOX1Q9NRD9 1551 aa12.7□□□□□ -0.38
RFFL-203ENST00000413582 GMPSP49915 693 aaPredicted RBP12.7□□□□□ -0.38
RFFL-203ENST00000413582 CXCL9Q07325 125 aa12.7□□□□□ -0.38
RFFL-203ENST00000413582 VPS33BQ9H267 617 aa12.7□□□□□ -0.38
RFFL-203ENST00000413582 PGAP2Q9UHJ9 254 aa12.7□□□□□ -0.38
RFFL-203ENST00000413582 ZNRF3Q9ULT6 936 aa12.7□□□□□ -0.38
RFFL-203ENST00000413582 RRP7AQ9Y3A4 280 aaKnown RBP12.7□□□□□ -0.38
RFFL-203ENST00000413582 ATP6V0A2Q9Y487 856 aa12.7□□□□□ -0.38
RFFL-203ENST00000413582 ABCC4O15439 1325 aa12.69□□□□□ -0.38
RFFL-203ENST00000413582 LRRC37AA6NMS7 1700 aa12.69□□□□□ -0.38
RFFL-203ENST00000413582 MYL6BP14649 208 aa12.69□□□□□ -0.38
RFFL-203ENST00000413582 PPP2R1AP30153 589 aa12.69□□□□□ -0.38
RFFL-203ENST00000413582 EIF4A1P60842 406 aaKnown RBP12.69□□□□□ -0.38
RFFL-203ENST00000413582 GIGYF2Q6Y7W6 1299 aaKnown RBP12.69□□□□□ -0.38
RFFL-203ENST00000413582 PNISRQ8TF01 805 aaKnown RBP12.69□□□□□ -0.38
RFFL-203ENST00000413582 RTFDC1Q9BY42 306 aaPredicted RBP12.69□□□□□ -0.38
RFFL-203ENST00000413582 HIRAP54198 1017 aaPredicted RBP12.68□□□□□ -0.38
RFFL-203ENST00000413582 PARP10Q53GL7 1025 aa12.68□□□□□ -0.38
RFFL-203ENST00000413582 CIAPIN1Q6FI81 312 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms