RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 HDGFL1Q5TGJ6 251 aa6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 RASEFQ8IZ41 740 aa6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 FAM200AQ8TCP9 573 aa6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 SCAND2PQ9GZW5 306 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 DDX19AQ9NUU7 478 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 NPHP3Q7Z494 1330 aa6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 APBB1O00213 710 aa6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 SURF6O75683 361 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 USPL1Q5W0Q7 1092 aa6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 KIF3AQ9Y496 699 aa6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 NUP188Q5SRE5 1749 aa6.84□□□□□ -1.31
CCDC88A-203ENST00000412148 LTKP29376 864 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 KRT85P78386 507 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 CACNB1Q02641 598 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 ATL3Q6DD88 541 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 CLASRPQ8N2M8 674 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 RNF214Q8ND24 703 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 IP6K1Q92551 441 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 GTPBP4Q9BZE4 634 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 MIS18AQ9NYP9 233 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 SRGAP3O43295 1099 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 HCLS1P14317 486 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 GJB2P29033 226 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 ST3GAL1Q11201 340 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 SARM1Q6SZW1 724 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 TDRD7Q8NHU6 1098 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 CHAMP1Q96JM3 812 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 FEZ1Q99689 392 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 ESF1Q9H501 851 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 PDRG1Q9NUG6 133 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 FAM13BQ9NYF5 915 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 DBF4Q9UBU7 674 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 ALS2Q96Q42 1657 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 MYH7P12883 1935 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 ZKSCAN1P17029 563 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 DMTNQ08495 405 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 AKAP4Q5JQC9 854 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 RNF20Q5VTR2 975 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 TSHZ3Q63HK5 1081 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 ZNF710Q8N1W2 664 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 EID1Q9Y6B2 187 aa6.83□□□□□ -1.32
CCDC88A-203ENST00000412148 UBR2Q8IWV8 1755 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 GLI3P10071 1580 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 NEMFO60524 1076 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 CASTP20810 708 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 FAM193AP78312 1265 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 KRT32Q14532 448 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 MAP3K11Q16584 847 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 AMOTQ4VCS5 1084 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 PLA2G4DQ86XP0 818 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 KCNF1Q9H3M0 494 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 RGPD5Q99666 1765 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 CHAF1AQ13111 956 aaPredicted RBP6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 DHX8Q14562 1220 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 NUTM1Q86Y26 1132 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 PDCL2Q8N4E4 241 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 IL1RAPL2Q9NP60 686 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 AMOTL2Q9Y2J4 779 aa6.82□□□□□ -1.32
CCDC88A-203ENST00000412148 CTAGE5O15320 804 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 NBPF7P0C2Y1 421 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 ME3Q16798 604 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 CREB3L3Q68CJ9 461 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 KSR2Q6VAB6 950 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 FBXL16Q8N461 479 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 CHMP4CQ96CF2 233 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 LLPHQ9BRT6 129 aaKnown RBP6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 NUP62CLQ9H1M0 184 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 CLSTN2Q9H4D0 955 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 ZSCAN16Q9H4T2 348 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 PAXBP1Q9Y5B6 917 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 MRVI1Q9Y6F6 885 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 TJP1Q07157 1748 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 COL18A1P39060 1754 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 PAPPAQ13219 1627 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 COL22A1Q8NFW1 1626 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 KIF20AO95235 890 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 LARGE1O95461 756 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 RPS6KB1P23443 525 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 RBM10P98175 930 aaKnown RBP6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 DNM1Q05193 864 aaKnown RBP6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 TTC6Q86TZ1 520 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 KCNH5Q8NCM2 988 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 LINS1Q8NG48 757 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 JAKMIP1Q96N16 626 aaKnown RBP6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 PHAXQ9H814 394 aaKnown RBP6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 GDPD2Q9HCC8 539 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 ADAMTSL3P82987 1691 aa6.81□□□□□ -1.32
CCDC88A-203ENST00000412148 SMTNL1A8MU46 457 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 AP5Z1O43299 807 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 ZSCAN20P17040 1043 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 KCNJ6P48051 423 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 PTH1RQ03431 593 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 NKX1-1Q15270 411 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 SAMD1Q6SPF0 538 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 CWC27Q6UX04 472 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 NGDNQ8NEJ9 315 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 RBM8AQ9Y5S9 174 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 SLC27A2O14975 620 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 TUBB4AP04350 444 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 RBM6P78332 1123 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms