RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SCN7AQ01118 1682 aa17.39■□□□□ 0.38
GPNMB-203ENST00000409458 CAMTA2O94983 1202 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 GPTP24298 496 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 FOXO4P98177 505 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 BMP2KLQ5H9B9 411 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 FAM196AQ6ZSG2 479 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 SALL3Q9BXA9 1300 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 NLRP10Q86W26 655 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 RHPN1Q8TCX5 695 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 C4BP0C0L5 1744 aa17.39■□□□□ 0.37
GPNMB-203ENST00000409458 EP400Q96L91 3159 aa17.38■□□□□ 0.37
GPNMB-203ENST00000409458 UBN2Q6ZU65 1347 aa17.38■□□□□ 0.37
GPNMB-203ENST00000409458 GSPT1P15170 499 aaKnown RBP17.38■□□□□ 0.37
GPNMB-203ENST00000409458 RFX5P48382 616 aaPredicted RBP17.38■□□□□ 0.37
GPNMB-203ENST00000409458 HSP90AB4PQ58FF6 505 aa17.38■□□□□ 0.37
GPNMB-203ENST00000409458 FBXO41Q8TF61 875 aa17.38■□□□□ 0.37
GPNMB-203ENST00000409458 KIF1BPQ96EK5 621 aa17.38■□□□□ 0.37
GPNMB-203ENST00000409458 IL1RAPL2Q9NP60 686 aa17.38■□□□□ 0.37
GPNMB-203ENST00000409458 TUBGCP6Q96RT7 1819 aa17.37■□□□□ 0.37
GPNMB-203ENST00000409458 PCCAP05165 728 aaPredicted RBP17.37■□□□□ 0.37
GPNMB-203ENST00000409458 OS9Q13438 667 aaPredicted RBP17.37■□□□□ 0.37
GPNMB-203ENST00000409458 TTC22Q5TAA0 569 aa17.37■□□□□ 0.37
GPNMB-203ENST00000409458 KLHDC4Q8TBB5 520 aa17.37■□□□□ 0.37
GPNMB-203ENST00000409458 LMBR1LQ6UX01 489 aa17.36■□□□□ 0.37
GPNMB-203ENST00000409458 ZNF34Q8IZ26 560 aa17.36■□□□□ 0.37
GPNMB-203ENST00000409458 ZBTB38Q8NAP3 1195 aaPredicted RBP17.36■□□□□ 0.37
GPNMB-203ENST00000409458 FAM89AQ96GI7 184 aa17.36■□□□□ 0.37
GPNMB-203ENST00000409458 RC3H1Q5TC82 1133 aaKnown RBP17.36■□□□□ 0.37
GPNMB-203ENST00000409458 TRIM37O94972 964 aa17.35■□□□□ 0.37
GPNMB-203ENST00000409458 SEC24BO95487 1268 aa17.35■□□□□ 0.37
GPNMB-203ENST00000409458 PDE1AP54750 535 aa17.35■□□□□ 0.37
GPNMB-203ENST00000409458 SIL1Q9H173 461 aa17.35■□□□□ 0.37
GPNMB-203ENST00000409458 RGS17Q9UGC6 210 aaPredicted RBP17.35■□□□□ 0.37
GPNMB-203ENST00000409458 CDHR2Q9BYE9 1310 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 MYH3P11055 1940 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 C4AP0C0L4 1744 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 MX1P20591 662 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 RXRBP28702 533 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 PTPN12Q05209 780 aaKnown RBP17.34■□□□□ 0.37
GPNMB-203ENST00000409458 TSHZ3Q63HK5 1081 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 SMIM5Q71RC9 77 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 ERC1Q8IUD2 1116 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 PLA2G12BQ9BX93 195 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 OSBPL3Q9H4L5 887 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 COPRSQ9NQ92 184 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 CHMP3Q9Y3E7 222 aa17.34■□□□□ 0.37
GPNMB-203ENST00000409458 SASH1O94885 1247 aa17.33■□□□□ 0.37
GPNMB-203ENST00000409458 G3BP1Q13283 466 aaKnown RBP eCLIP17.33■□□□□ 0.37
GPNMB-203ENST00000409458 NUTM1Q86Y26 1132 aa17.33■□□□□ 0.37
GPNMB-203ENST00000409458 SYNE4Q8N205 404 aa17.33■□□□□ 0.37
GPNMB-203ENST00000409458 GNPATO15228 680 aa17.32■□□□□ 0.36
GPNMB-203ENST00000409458 RPS6KA4O75676 772 aa17.32■□□□□ 0.36
GPNMB-203ENST00000409458 LRRC4BQ9NT99 713 aa17.32■□□□□ 0.36
GPNMB-203ENST00000409458 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.32■□□□□ 0.36
GPNMB-203ENST00000409458 LAMB2P55268 1798 aa17.32■□□□□ 0.36
GPNMB-203ENST00000409458 AMIGO3Q86WK7 504 aa17.32■□□□□ 0.36
GPNMB-203ENST00000409458 STAP2Q9UGK3 403 aa17.32■□□□□ 0.36
GPNMB-203ENST00000409458 TRMT112Q9UI30 125 aaKnown RBP17.32■□□□□ 0.36
GPNMB-203ENST00000409458 DDX60Q8IY21 1712 aaKnown RBP17.31■□□□□ 0.36
GPNMB-203ENST00000409458 SUSD4Q5VX71 490 aa17.31■□□□□ 0.36
GPNMB-203ENST00000409458 ZNF652Q9Y2D9 606 aa17.3■□□□□ 0.36
GPNMB-203ENST00000409458 AOX1Q06278 1338 aa17.3■□□□□ 0.36
GPNMB-203ENST00000409458 UBR3Q6ZT12 1888 aa17.3■□□□□ 0.36
GPNMB-203ENST00000409458 IRS4O14654 1257 aaPredicted RBP17.29■□□□□ 0.36
GPNMB-203ENST00000409458 PARP10Q53GL7 1025 aa17.29■□□□□ 0.36
GPNMB-203ENST00000409458 POTEAQ6S8J7 498 aa17.29■□□□□ 0.36
GPNMB-203ENST00000409458 CLASRPQ8N2M8 674 aaKnown RBP17.29■□□□□ 0.36
GPNMB-203ENST00000409458 NIP7Q9Y221 180 aaKnown RBP eCLIP17.29■□□□□ 0.36
GPNMB-203ENST00000409458 RTCBQ9Y3I0 505 aaKnown RBP17.29■□□□□ 0.36
GPNMB-203ENST00000409458 COL24A1Q17RW2 1714 aa17.29■□□□□ 0.36
GPNMB-203ENST00000409458 TNS1Q9HBL0 1735 aaKnown RBP17.29■□□□□ 0.36
GPNMB-203ENST00000409458 CSF1RP07333 972 aa17.29■□□□□ 0.36
GPNMB-203ENST00000409458 SDSP20132 328 aa17.29■□□□□ 0.36
GPNMB-203ENST00000409458 CLEC4GQ6UXB4 293 aa17.29■□□□□ 0.36
GPNMB-203ENST00000409458 CCDC85AQ96PX6 553 aaPredicted RBP17.29■□□□□ 0.36
GPNMB-203ENST00000409458 USP42Q9H9J4 1324 aaKnown RBP17.29■□□□□ 0.36
GPNMB-203ENST00000409458 FAM177BA6PVY3 158 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 NTSR2O95665 410 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 CTSWP56202 376 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 SLC27A3Q5K4L6 730 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 USPL1Q5W0Q7 1092 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 TBC1D9Q6ZT07 1266 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 AACSQ86V21 672 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 AK7Q96M32 723 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 UTP14AQ9BVJ6 771 aaKnown RBP17.28■□□□□ 0.36
GPNMB-203ENST00000409458 BCL2L12Q9HB09 334 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 SRP68Q9UHB9 627 aaKnown RBP17.28■□□□□ 0.36
GPNMB-203ENST00000409458 NARFQ9UHQ1 456 aa17.28■□□□□ 0.36
GPNMB-203ENST00000409458 SH3TC1Q8TE82 1336 aa17.27■□□□□ 0.36
GPNMB-203ENST00000409458 RGL2O15211 777 aa17.27■□□□□ 0.36
GPNMB-203ENST00000409458 CDC45O75419 566 aa17.27■□□□□ 0.36
GPNMB-203ENST00000409458 PI4K2BQ8TCG2 481 aa17.27■□□□□ 0.36
GPNMB-203ENST00000409458 ZNF594Q96JF6 807 aaPredicted RBP17.27■□□□□ 0.36
GPNMB-203ENST00000409458 PDE8AO60658 829 aa17.26■□□□□ 0.35
GPNMB-203ENST00000409458 ATG9AQ7Z3C6 839 aa17.26■□□□□ 0.35
GPNMB-203ENST00000409458 TTLL11Q8NHH1 800 aa17.26■□□□□ 0.35
GPNMB-203ENST00000409458 ARHGEF1Q92888 912 aaKnown RBP17.26■□□□□ 0.35
GPNMB-203ENST00000409458 EAF2Q96CJ1 260 aaPredicted RBP17.26■□□□□ 0.35
GPNMB-203ENST00000409458 CASZ1Q86V15 1759 aa17.26■□□□□ 0.35
GPNMB-203ENST00000409458 LRP5O75197 1615 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms