RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 GOLGA6L7A0A1B0GV03 622 aa8.59□□□□□ -1.03
SCN9A-202ENST00000409435 TPM1P09493 284 aa8.59□□□□□ -1.03
SCN9A-202ENST00000409435 XAGE3Q8WTP9 111 aa8.59□□□□□ -1.03
SCN9A-202ENST00000409435 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.59□□□□□ -1.03
SCN9A-202ENST00000409435 IREB2P48200 963 aaKnown RBP8.59□□□□□ -1.03
SCN9A-202ENST00000409435 MTFR1LQ9H019 292 aa8.59□□□□□ -1.03
SCN9A-202ENST00000409435 SPOUT1Q5T280 376 aaKnown RBP8.59□□□□□ -1.03
SCN9A-202ENST00000409435 WDR17Q8IZU2 1322 aa8.59□□□□□ -1.04
SCN9A-202ENST00000409435 RNMTO43148 476 aaKnown RBP8.58□□□□□ -1.04
SCN9A-202ENST00000409435 UQCRFS1P1P0C7P4 283 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 CIAPIN1Q6FI81 312 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 MNS1Q8NEH6 495 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 PPEF1O14829 653 aaPredicted RBP8.58□□□□□ -1.04
SCN9A-202ENST00000409435 TTF1Q15361 905 aaPredicted RBP8.58□□□□□ -1.04
SCN9A-202ENST00000409435 COPS6Q7L5N1 327 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 GOLGA6L19H0YKK7 550 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 CCER2I3L3R5 266 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 EXOSC9Q06265 439 aaKnown RBP8.58□□□□□ -1.04
SCN9A-202ENST00000409435 SH3TC1Q8TE82 1336 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 CCDC85CA6NKD9 419 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 LDHBP07195 334 aaKnown RBP8.58□□□□□ -1.04
SCN9A-202ENST00000409435 GRIPAP1Q4V328 841 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 LBHD1Q9BQE6 289 aaPredicted RBP8.58□□□□□ -1.04
SCN9A-202ENST00000409435 KIAA0754O94854 1291 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 UBE3BQ7Z3V4 1068 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 HACL1Q9UJ83 578 aa8.58□□□□□ -1.04
SCN9A-202ENST00000409435 KDM4AO75164 1064 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 MKRN3Q13064 507 aaKnown RBP8.57□□□□□ -1.04
SCN9A-202ENST00000409435 POLR3AO14802 1390 aaPredicted RBP8.57□□□□□ -1.04
SCN9A-202ENST00000409435 ANKRD36BQ8N2N9 1353 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 OSBPP22059 807 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 PIP4K2AP48426 406 aaPredicted RBP8.57□□□□□ -1.04
SCN9A-202ENST00000409435 PDE4BQ07343 736 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 DNAJC10Q8IXB1 793 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 CTNNA3Q9UI47 895 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 ERVK-7P63135 1459 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 FAM161AQ3B820 660 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 CLASP1Q7Z460 1538 aa8.57□□□□□ -1.04
SCN9A-202ENST00000409435 NCBP1Q09161 790 aaKnown RBP8.56□□□□□ -1.04
SCN9A-202ENST00000409435 TMC4Q7Z404 712 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 OVOS2A0A0G2JMS6 1433 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 OVOS2A0A0J9YW53 1432 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 OVOS2Q6IE36 1432 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 ZBTB24O43167 697 aaPredicted RBP8.56□□□□□ -1.04
SCN9A-202ENST00000409435 NAPBQ9H115 298 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 PZPP20742 1482 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 PDIA4P13667 645 aaKnown RBP8.56□□□□□ -1.04
SCN9A-202ENST00000409435 NPR1P16066 1061 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 SSR1P43307 286 aaKnown RBP8.56□□□□□ -1.04
SCN9A-202ENST00000409435 CCDC174Q6PII3 467 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 HOMER1Q86YM7 354 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 HOMEZQ8IX15 550 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 ARAP3Q8WWN8 1544 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 PTPRTO14522 1441 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 C21orf2O43822 256 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 CCNA1P78396 465 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 TRIM22Q8IYM9 498 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 DDX11Q96FC9 970 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 MASTLQ96GX5 879 aa8.56□□□□□ -1.04
SCN9A-202ENST00000409435 HMGN5P82970 282 aaKnown RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 NBPF11Q86T75 865 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 THUMPD2Q9BTF0 503 aaKnown RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 TANGO6Q9C0B7 1094 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 RANBP6O60518 1105 aaKnown RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 LRRCC1Q9C099 1032 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 IFT57Q9NWB7 429 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 IQSEC3Q9UPP2 1182 aaPredicted RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 KIF7Q2M1P5 1343 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 COL17A1Q9UMD9 1497 aaPredicted RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 ST18O60284 1047 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 CRKLP46109 303 aaKnown RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 SLC15A2Q16348 729 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 DDX49Q9Y6V7 483 aaKnown RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 MAPK8IP2Q13387 824 aaPredicted RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 EIF4A2Q14240 407 aaKnown RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 MAP3K19Q56UN5 1328 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 IPO7O95373 1038 aaKnown RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 PSMA5P28066 241 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 UBXN2AP68543 259 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 TAF12Q16514 161 aa8.55□□□□□ -1.04
SCN9A-202ENST00000409435 NAA16Q6N069 864 aaPredicted RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 PNMA8AQ86V59 439 aaPredicted RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 TNPO1Q92973 898 aaKnown RBP8.55□□□□□ -1.04
SCN9A-202ENST00000409435 BECN2A8MW95 431 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 ATP2B4P23634 1241 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 ODF2Q5BJF6 829 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 ZBTB33Q86T24 672 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 CKAP2LQ8IYA6 745 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 SLC52A2Q9HAB3 445 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 ARHGEF10LQ9HCE6 1279 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 ABCC11Q96J66 1382 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 IQCA1Q86XH1 822 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 EYA1Q99502 592 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 PAGR1Q9BTK6 254 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 ZEB2O60315 1214 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 NOP2P46087 812 aaKnown RBP8.54□□□□□ -1.04
SCN9A-202ENST00000409435 TSR2Q969E8 191 aaKnown RBP8.54□□□□□ -1.04
SCN9A-202ENST00000409435 SBNO1A3KN83 1393 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 HCLS1P14317 486 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms