RNA–Protein interactions for RNA: ENST00000407019.6

NUP50-203, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 2,059 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-203ENST00000407019 NMIQ13287 307 aaPredicted RBP20.25■□□□□ 0.83
NUP50-203ENST00000407019 ANP32BQ92688 251 aaKnown RBP20.25■□□□□ 0.83
NUP50-203ENST00000407019 JAKMIP1Q96N16 626 aaKnown RBP20.25■□□□□ 0.83
NUP50-203ENST00000407019 COPRSQ9NQ92 184 aa20.25■□□□□ 0.83
NUP50-203ENST00000407019 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.25■□□□□ 0.83
NUP50-203ENST00000407019 NECTIN1Q15223 517 aa20.25■□□□□ 0.83
NUP50-203ENST00000407019 ARFGEF2Q9Y6D5 1785 aa20.25■□□□□ 0.83
NUP50-203ENST00000407019 VPS53Q5VIR6 699 aa20.24■□□□□ 0.83
NUP50-203ENST00000407019 FAM227BQ96M60 508 aa20.24■□□□□ 0.83
NUP50-203ENST00000407019 FSD1Q9BTV5 496 aa20.24■□□□□ 0.83
NUP50-203ENST00000407019 BOLA2Q9H3K6 86 aa20.24■□□□□ 0.83
NUP50-203ENST00000407019 ZSWIM6Q9HCJ5 1215 aa20.24■□□□□ 0.83
NUP50-203ENST00000407019 SNRKQ9NRH2 765 aa20.24■□□□□ 0.83
NUP50-203ENST00000407019 PDRG1Q9NUG6 133 aa20.24■□□□□ 0.83
NUP50-203ENST00000407019 TMEM63CQ9P1W3 806 aa20.24■□□□□ 0.83
NUP50-203ENST00000407019 AFDNP55196 1824 aaKnown RBP20.24■□□□□ 0.83
NUP50-203ENST00000407019 CPA1P15085 419 aa20.23■□□□□ 0.83
NUP50-203ENST00000407019 ZKSCAN1P17029 563 aaPredicted RBP20.23■□□□□ 0.83
NUP50-203ENST00000407019 NSFL1CQ9UNZ2 370 aaKnown RBP20.23■□□□□ 0.83
NUP50-203ENST00000407019 RBM8AQ9Y5S9 174 aaKnown RBP20.23■□□□□ 0.83
NUP50-203ENST00000407019 CYP46A1Q9Y6A2 500 aa20.23■□□□□ 0.83
NUP50-203ENST00000407019 RFX5P48382 616 aaPredicted RBP20.23■□□□□ 0.83
NUP50-203ENST00000407019 ADCK5Q3MIX3 580 aa20.23■□□□□ 0.83
NUP50-203ENST00000407019 RABL6Q3YEC7 729 aaPredicted RBP20.23■□□□□ 0.83
NUP50-203ENST00000407019 UBE3BQ7Z3V4 1068 aa20.23■□□□□ 0.83
NUP50-203ENST00000407019 PLBD2Q8NHP8 589 aa20.23■□□□□ 0.83
NUP50-203ENST00000407019 PPP1R9BQ96SB3 815 aa20.23■□□□□ 0.83
NUP50-203ENST00000407019 MAP4K1Q92918 833 aa20.22■□□□□ 0.83
NUP50-203ENST00000407019 LARP6Q9BRS8 491 aaKnown RBP20.22■□□□□ 0.83
NUP50-203ENST00000407019 ERBB4Q15303 1308 aa20.22■□□□□ 0.83
NUP50-203ENST00000407019 CLCN1P35523 988 aa20.22■□□□□ 0.83
NUP50-203ENST00000407019 KCNJ4P48050 445 aa20.22■□□□□ 0.83
NUP50-203ENST00000407019 PTPN12Q05209 780 aaKnown RBP20.22■□□□□ 0.83
NUP50-203ENST00000407019 CREB3L3Q68CJ9 461 aa20.22■□□□□ 0.83
NUP50-203ENST00000407019 JARID2Q92833 1246 aaPredicted RBP20.22■□□□□ 0.83
NUP50-203ENST00000407019 ZSCAN31Q96LW9 406 aaPredicted RBP20.22■□□□□ 0.83
NUP50-203ENST00000407019 SMC3Q9UQE7 1217 aa20.22■□□□□ 0.83
NUP50-203ENST00000407019 PCDH11XQ9BZA7 1347 aa20.22■□□□□ 0.83
NUP50-203ENST00000407019 PCDH11YQ9BZA8 1340 aa20.22■□□□□ 0.83
NUP50-203ENST00000407019 WDR17Q8IZU2 1322 aa20.21■□□□□ 0.83
NUP50-203ENST00000407019 A0A087WZG4 1122 aa20.21■□□□□ 0.83
NUP50-203ENST00000407019 ATP5J2-PTCD1G3V325 749 aa20.21■□□□□ 0.83
NUP50-203ENST00000407019 PTCD1O75127 700 aaKnown RBP20.21■□□□□ 0.83
NUP50-203ENST00000407019 PRIM1P49642 420 aaKnown RBP20.21■□□□□ 0.83
NUP50-203ENST00000407019 LRSAM1Q6UWE0 723 aa20.21■□□□□ 0.83
NUP50-203ENST00000407019 SH2B1Q9NRF2 756 aaPredicted RBP20.21■□□□□ 0.83
NUP50-203ENST00000407019 A0A0D9SFI3 127 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 TNNI3KQ59H18 835 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 BRINP3Q76B58 766 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 RBSNQ9H1K0 784 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 FPGT-TNNI3KV9GXZ4 949 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 MED23Q9ULK4 1368 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 ESPNB1AK53 854 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 LARGE1O95461 756 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 ZSCAN22P10073 491 aaPredicted RBP20.2■□□□□ 0.82
NUP50-203ENST00000407019 PRDM11Q9NQV5 511 aa20.2■□□□□ 0.82
NUP50-203ENST00000407019 CASP7P55210 303 aa20.19■□□□□ 0.82
NUP50-203ENST00000407019 ZCRB1Q8TBF4 217 aaKnown RBP20.19■□□□□ 0.82
NUP50-203ENST00000407019 SYCE3A1L190 88 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 SLC27A2O14975 620 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 STX6O43752 255 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 ATP5JP18859 108 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 TFCP2Q12800 502 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 FOXD4L6Q3SYB3 417 aaPredicted RBP20.18■□□□□ 0.82
NUP50-203ENST00000407019 FOXD4L3Q6VB84 417 aaPredicted RBP20.18■□□□□ 0.82
NUP50-203ENST00000407019 TOM1L2Q6ZVM7 507 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 SYAP1Q96A49 352 aaPredicted RBP20.18■□□□□ 0.82
NUP50-203ENST00000407019 DBNLQ9UJU6 430 aaKnown RBP20.18■□□□□ 0.82
NUP50-203ENST00000407019 SYT1P21579 422 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 PSMA5P28066 241 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 RNF20Q5VTR2 975 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 CCDC83Q8IWF9 413 aa20.18■□□□□ 0.82
NUP50-203ENST00000407019 HSPA2P54652 639 aa20.17■□□□□ 0.82
NUP50-203ENST00000407019 TMEM87AQ8NBN3 555 aa20.17■□□□□ 0.82
NUP50-203ENST00000407019 XIRP1Q702N8 1843 aaKnown RBP20.17■□□□□ 0.82
NUP50-203ENST00000407019 JCADQ9P266 1359 aa20.17■□□□□ 0.82
NUP50-203ENST00000407019 ERVV-2B6SEH9 535 aa20.17■□□□□ 0.82
NUP50-203ENST00000407019 USP48Q86UV5 1035 aa20.17■□□□□ 0.82
NUP50-203ENST00000407019 GDPD2Q9HCC8 539 aa20.17■□□□□ 0.82
NUP50-203ENST00000407019 NBPF26B4DH59 902 aa20.16■□□□□ 0.82
NUP50-203ENST00000407019 NBPF14Q5TI25 921 aa20.16■□□□□ 0.82
NUP50-203ENST00000407019 NBPF10Q6P3W6 841 aaKnown RBP20.16■□□□□ 0.82
NUP50-203ENST00000407019 NBPF15Q8N660 670 aa20.16■□□□□ 0.82
NUP50-203ENST00000407019 RFX7Q2KHR2 1363 aa20.16■□□□□ 0.82
NUP50-203ENST00000407019 COL5A2P05997 1499 aaPredicted RBP20.16■□□□□ 0.82
NUP50-203ENST00000407019 F13A1P00488 732 aa20.15■□□□□ 0.82
NUP50-203ENST00000407019 UBR2Q8IWV8 1755 aa20.15■□□□□ 0.82
NUP50-203ENST00000407019 GJB2P29033 226 aa20.15■□□□□ 0.82
NUP50-203ENST00000407019 DDX54Q8TDD1 881 aaKnown RBP20.15■□□□□ 0.82
NUP50-203ENST00000407019 ATP6V1DQ9Y5K8 247 aa20.15■□□□□ 0.82
NUP50-203ENST00000407019 KCPQ6ZWJ8 1503 aa20.14■□□□□ 0.82
NUP50-203ENST00000407019 H7C1W4 665 aa20.14■□□□□ 0.81
NUP50-203ENST00000407019 GADD45BO75293 160 aaPredicted RBP20.14■□□□□ 0.81
NUP50-203ENST00000407019 LMBR1LQ6UX01 489 aa20.14■□□□□ 0.81
NUP50-203ENST00000407019 ZNF589Q86UQ0 364 aaPredicted RBP20.14■□□□□ 0.81
NUP50-203ENST00000407019 EDC3Q96F86 508 aaKnown RBP20.14■□□□□ 0.81
NUP50-203ENST00000407019 HMG20BQ9P0W2 317 aa20.14■□□□□ 0.81
NUP50-203ENST00000407019 ME3Q16798 604 aa20.14■□□□□ 0.81
NUP50-203ENST00000407019 BLOC1S2Q6QNY1 142 aa20.14■□□□□ 0.81
NUP50-203ENST00000407019 CWC25Q9NXE8 425 aaPredicted RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms