RNA–Protein interactions for RNA: ENST00000401921.5

HDAC9-201, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best) BASIC

Gene HDAC9, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-201ENST00000401921 USP16Q9Y5T5 823 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 TTC41PQ6P2S7 1318 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 RGPD8O14715 1765 aaPredicted RBP9.18□□□□□ -0.94
HDAC9-201ENST00000401921 NRKQ7Z2Y5 1582 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 ZSCAN22P10073 491 aaPredicted RBP9.18□□□□□ -0.94
HDAC9-201ENST00000401921 CSPP1Q1MSJ5 1256 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 ZNF496Q96IT1 587 aaPredicted RBP9.18□□□□□ -0.94
HDAC9-201ENST00000401921 AOX1Q06278 1338 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 H3BQV1 296 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 HIP1O00291 1037 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 PPFIA3O75145 1194 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 CUL4AQ13619 759 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 IFFO2Q5TF58 517 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 IFNL2Q8IZJ0 200 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 FAM184AQ8NB25 1140 aa9.18□□□□□ -0.94
HDAC9-201ENST00000401921 LSG1Q9H089 658 aaKnown RBP9.18□□□□□ -0.94
HDAC9-201ENST00000401921 TLR7Q9NYK1 1049 aaKnown RBP9.18□□□□□ -0.94
HDAC9-201ENST00000401921 SALL3Q9BXA9 1300 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 CEBPZQ03701 1054 aaKnown RBP9.17□□□□□ -0.94
HDAC9-201ENST00000401921 DNM1Q05193 864 aaKnown RBP9.17□□□□□ -0.94
HDAC9-201ENST00000401921 TOM1L2Q6ZVM7 507 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 RUFY3Q7L099 469 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 STRN4Q9NRL3 753 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 ANKARQ7Z5J8 1434 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 KIAA2012Q0VF49 1180 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 FAM173BQ6P4H8 233 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 CLEC17AQ6ZS10 378 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 DDX11Q96FC9 970 aa9.17□□□□□ -0.94
HDAC9-201ENST00000401921 TFIP11Q9UBB9 837 aaKnown RBP9.17□□□□□ -0.94
HDAC9-201ENST00000401921 CREB3L3Q68CJ9 461 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 DDX46Q7L014 1031 aaKnown RBP9.16□□□□□ -0.94
HDAC9-201ENST00000401921 DRC7Q8IY82 874 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 ZSCAN31Q96LW9 406 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-201ENST00000401921 USP25Q9UHP3 1055 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 ZHX1Q9UKY1 873 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-201ENST00000401921 ADCY9O60503 1353 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 LARGE1O95461 756 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 SNRPA1P09661 255 aaKnown RBP9.16□□□□□ -0.94
HDAC9-201ENST00000401921 HCLS1P14317 486 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-201ENST00000401921 EVA1CP58658 441 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 CAMK4Q16566 473 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 GIMAP6Q6P9H5 292 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 LRRC2Q9BYS8 371 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 ZBTB3Q9H5J0 574 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 CCDC171Q6TFL3 1326 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 SASH1O94885 1247 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 F13A1P00488 732 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 MAPK8IP2Q13387 824 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-201ENST00000401921 BICD2Q8TD16 824 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 FMNL2Q96PY5 1086 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 C19orf44Q9H6X5 657 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 PRDM11Q9NQV5 511 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 CCDC39Q9UFE4 941 aa9.16□□□□□ -0.94
HDAC9-201ENST00000401921 TFCP2Q12800 502 aa9.15□□□□□ -0.94
HDAC9-201ENST00000401921 LMBR1LQ6UX01 489 aa9.15□□□□□ -0.94
HDAC9-201ENST00000401921 SLC52A2Q9HAB3 445 aa9.15□□□□□ -0.94
HDAC9-201ENST00000401921 GCKRQ14397 625 aa9.15□□□□□ -0.94
HDAC9-201ENST00000401921 CCDC129Q6ZRS4 1044 aa9.15□□□□□ -0.94
HDAC9-201ENST00000401921 ZNF830Q96NB3 372 aaPredicted RBP9.15□□□□□ -0.94
HDAC9-201ENST00000401921 SH2B1Q9NRF2 756 aaPredicted RBP9.15□□□□□ -0.94
HDAC9-201ENST00000401921 A0A0D9SFI3 127 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 NEURL1BA8MQ27 555 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.14□□□□□ -0.95
HDAC9-201ENST00000401921 CEMIPQ8WUJ3 1361 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 KRT85P78386 507 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 ME3Q16798 604 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 CCDC183Q5T5S1 534 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 SPC24Q8NBT2 197 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 PPP1R9BQ96SB3 815 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 GOLIM4O00461 696 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 IGKV5-2P06315 115 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 UBE2HP62256 183 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 FKBP4Q02790 459 aaKnown RBP eCLIP9.14□□□□□ -0.95
HDAC9-201ENST00000401921 WASHC4Q2M389 1173 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 EPHA10Q5JZY3 1008 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 VPS53Q5VIR6 699 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 PAXIP1Q6ZW49 1069 aaPredicted RBP9.14□□□□□ -0.95
HDAC9-201ENST00000401921 DBNDD2Q9BQY9 259 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 FAM13BQ9NYF5 915 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 NPHP3Q7Z494 1330 aa9.14□□□□□ -0.95
HDAC9-201ENST00000401921 SLC27A2O14975 620 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 PDCP20941 246 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 ERBB3P21860 1342 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 METTL22Q9BUU2 404 aaPredicted RBP9.13□□□□□ -0.95
HDAC9-201ENST00000401921 PHKG2P15735 406 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 TIMM10P62072 90 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 ANKRD1Q15327 319 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 CKAP2LQ8IYA6 745 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 FBXW7Q969H0 707 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 SYTL4Q96C24 671 aaPredicted RBP9.13□□□□□ -0.95
HDAC9-201ENST00000401921 SEC62Q99442 399 aaKnown RBP9.13□□□□□ -0.95
HDAC9-201ENST00000401921 SNRKQ9NRH2 765 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 SPATA32Q96LK8 384 aa9.13□□□□□ -0.95
HDAC9-201ENST00000401921 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.13□□□□□ -0.95
HDAC9-201ENST00000401921 KDM4AO75164 1064 aa9.12□□□□□ -0.95
HDAC9-201ENST00000401921 TPCN1Q9ULQ1 816 aa9.12□□□□□ -0.95
HDAC9-201ENST00000401921 A1BGP04217 495 aa9.12□□□□□ -0.95
HDAC9-201ENST00000401921 ZNF589Q86UQ0 364 aaPredicted RBP9.12□□□□□ -0.95
HDAC9-201ENST00000401921 NEK1Q96PY6 1258 aa9.12□□□□□ -0.95
HDAC9-201ENST00000401921 KIF13AQ9H1H9 1805 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms