RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 JDP2Q8WYK2 163 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 KIF5BP33176 963 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 GJA3Q9Y6H8 435 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 MAP3K11Q16584 847 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 NFATC2IPQ8NCF5 419 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 ARHGAP29Q52LW3 1261 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 ISM2Q6H9L7 571 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 MPHOSPH6Q99547 160 aaKnown RBP13.15□□□□□ -0.3
TTC28-201ENST00000397906 C14orf93Q9H972 538 aaKnown RBP13.15□□□□□ -0.3
TTC28-201ENST00000397906 BTG4Q9NY30 223 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 GNPATO15228 680 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 METAP2P50579 478 aaKnown RBP eCLIP13.15□□□□□ -0.3
TTC28-201ENST00000397906 TDRD12Q587J7 1177 aaKnown RBP13.15□□□□□ -0.3
TTC28-201ENST00000397906 FERMT2Q96AC1 680 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 UHRF1BP1LA0JNW5 1464 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 SPA17Q15506 151 aa13.15□□□□□ -0.3
TTC28-201ENST00000397906 IDEP14735 1019 aa13.15□□□□□ -0.31
TTC28-201ENST00000397906 CCDC191Q8NCU4 936 aa13.15□□□□□ -0.31
TTC28-201ENST00000397906 SLC4A4Q9Y6R1 1079 aa13.15□□□□□ -0.31
TTC28-201ENST00000397906 ABCC11Q96J66 1382 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 IL2RBP14784 551 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 RIMS2Q9UQ26 1411 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 UTP14AQ9BVJ6 771 aaKnown RBP13.14□□□□□ -0.31
TTC28-201ENST00000397906 NSFL1CQ9UNZ2 370 aaKnown RBP13.14□□□□□ -0.31
TTC28-201ENST00000397906 CCDC12Q8WUD4 166 aaPredicted RBP13.14□□□□□ -0.31
TTC28-201ENST00000397906 CALML4Q96GE6 196 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 ZRANB1Q9UGI0 708 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 CNNM3Q8NE01 707 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 PLCD4Q9BRC7 762 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 HEATR3Q7Z4Q2 680 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 ZNF408Q9H9D4 720 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 CCDC178Q5BJE1 867 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 CPLX3Q8WVH0 158 aa13.14□□□□□ -0.31
TTC28-201ENST00000397906 BACH2Q9BYV9 841 aa13.13□□□□□ -0.31
TTC28-201ENST00000397906 NUP88Q99567 741 aaPredicted RBP13.13□□□□□ -0.31
TTC28-201ENST00000397906 PHAXQ9H814 394 aaKnown RBP13.13□□□□□ -0.31
TTC28-201ENST00000397906 ECHDC1Q9NTX5 307 aa13.13□□□□□ -0.31
TTC28-201ENST00000397906 RAPGEF6Q8TEU7 1601 aa13.13□□□□□ -0.31
TTC28-201ENST00000397906 NF2P35240 595 aa13.13□□□□□ -0.31
TTC28-201ENST00000397906 RBM10P98175 930 aaKnown RBP13.13□□□□□ -0.31
TTC28-201ENST00000397906 BIN1O00499 593 aa13.13□□□□□ -0.31
TTC28-201ENST00000397906 IFIT1BQ5T764 474 aaKnown RBP13.13□□□□□ -0.31
TTC28-201ENST00000397906 GOPCQ9HD26 462 aa13.13□□□□□ -0.31
TTC28-201ENST00000397906 IARSP41252 1262 aaKnown RBP13.12□□□□□ -0.31
TTC28-201ENST00000397906 BIN2Q9UBW5 565 aaPredicted RBP13.12□□□□□ -0.31
TTC28-201ENST00000397906 SYCP2Q9BX26 1530 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 HELBQ8NG08 1087 aaPredicted RBP13.12□□□□□ -0.31
TTC28-201ENST00000397906 USP16Q9Y5T5 823 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 CETN2P41208 172 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 TCP11L1Q9NUJ3 509 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 CCDC112Q8NEF3 446 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 CCDC113Q9H0I3 377 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 GJB2P29033 226 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 LMOD1P29536 600 aaPredicted RBP13.12□□□□□ -0.31
TTC28-201ENST00000397906 NCOA7Q8NI08 942 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 IQCEQ6IPM2 695 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 NYXQ9GZU5 481 aa13.12□□□□□ -0.31
TTC28-201ENST00000397906 CTNNA2P26232 953 aa13.11□□□□□ -0.31
TTC28-201ENST00000397906 SMARCC1Q92922 1105 aaPredicted RBP13.11□□□□□ -0.31
TTC28-201ENST00000397906 MAP3K9P80192 1104 aa13.11□□□□□ -0.31
TTC28-201ENST00000397906 MIGA1Q8NAN2 632 aa13.11□□□□□ -0.31
TTC28-201ENST00000397906 LRRC2Q9BYS8 371 aa13.11□□□□□ -0.31
TTC28-201ENST00000397906 VPS36Q86VN1 386 aa13.11□□□□□ -0.31
TTC28-201ENST00000397906 ZC3H12CQ9C0D7 883 aaKnown RBP13.11□□□□□ -0.31
TTC28-201ENST00000397906 NAA16Q6N069 864 aaPredicted RBP13.1□□□□□ -0.31
TTC28-201ENST00000397906 ZNF354CQ86Y25 554 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 COMMD10Q9Y6G5 202 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 UQCRFS1P1P0C7P4 283 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 CCDC40Q4G0X9 1142 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 LEKR1Q6ZMV7 388 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 ZGPATQ8N5A5 531 aaKnown RBP13.1□□□□□ -0.31
TTC28-201ENST00000397906 SP4Q02446 784 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 ATP2B3Q16720 1220 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 TPTE2Q6XPS3 522 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 CALM1P0DP23 149 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 CALM2P0DP24 149 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 CALM3P0DP25 149 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 LMBR1LQ6UX01 489 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 ZBTB21Q9ULJ3 1066 aa13.1□□□□□ -0.31
TTC28-201ENST00000397906 WTAPQ15007 396 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 EZRP15311 586 aaKnown RBP13.09□□□□□ -0.31
TTC28-201ENST00000397906 ANKRD36BQ8N2N9 1353 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 CCDC148Q8NFR7 591 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 CCDC102AQ96A19 550 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 NEK1Q96PY6 1258 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 GRPEL1Q9HAV7 217 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 TFIP11Q9UBB9 837 aaKnown RBP13.09□□□□□ -0.31
TTC28-201ENST00000397906 TTC21AQ8NDW8 1320 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 PRC1O43663 620 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 ITSN2Q9NZM3 1697 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 DPH6Q7L8W6 267 aa13.09□□□□□ -0.31
TTC28-201ENST00000397906 SH2B1Q9NRF2 756 aaPredicted RBP13.09□□□□□ -0.31
TTC28-201ENST00000397906 NSD2O96028 1365 aa13.08□□□□□ -0.31
TTC28-201ENST00000397906 LIMCH1Q9UPQ0 1083 aa13.08□□□□□ -0.31
TTC28-201ENST00000397906 ERLIN1O75477 346 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 AKAP4Q5JQC9 854 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 GDPD2Q9HCC8 539 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 MTIF2P46199 727 aaKnown RBP13.08□□□□□ -0.32
TTC28-201ENST00000397906 HMGN5P82970 282 aaKnown RBP13.08□□□□□ -0.32
TTC28-201ENST00000397906 MEIS3Q99687 375 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms