RNA–Protein interactions for RNA: ENST00000397760.8

PDLIM2-204, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-204ENST00000397760 PDZRN3Q9UPQ7 1066 aa24■■□□□ 1.43
PDLIM2-204ENST00000397760 HMGB2P26583 209 aaKnown RBP23.99■■□□□ 1.43
PDLIM2-204ENST00000397760 NLRP10Q86W26 655 aa23.98■■□□□ 1.43
PDLIM2-204ENST00000397760 ZNF34Q8IZ26 560 aa23.98■■□□□ 1.43
PDLIM2-204ENST00000397760 BICC1Q9H694 974 aaKnown RBP23.98■■□□□ 1.43
PDLIM2-204ENST00000397760 C4BP0C0L5 1744 aa23.98■■□□□ 1.43
PDLIM2-204ENST00000397760 SRGAP3O43295 1099 aa23.97■■□□□ 1.43
PDLIM2-204ENST00000397760 MTX1Q13505 466 aa23.97■■□□□ 1.43
PDLIM2-204ENST00000397760 AMIGO3Q86WK7 504 aa23.97■■□□□ 1.43
PDLIM2-204ENST00000397760 SSH3Q8TE77 659 aa23.97■■□□□ 1.43
PDLIM2-204ENST00000397760 ZNF652Q9Y2D9 606 aa23.97■■□□□ 1.43
PDLIM2-204ENST00000397760 TAF1LQ8IZX4 1826 aa23.97■■□□□ 1.43
PDLIM2-204ENST00000397760 AFDNP55196 1824 aaKnown RBP23.96■■□□□ 1.43
PDLIM2-204ENST00000397760 POLA2Q14181 598 aa23.96■■□□□ 1.43
PDLIM2-204ENST00000397760 ARHGEF1Q92888 912 aaKnown RBP23.96■■□□□ 1.43
PDLIM2-204ENST00000397760 CLEC4GQ6UXB4 293 aa23.96■■□□□ 1.43
PDLIM2-204ENST00000397760 NARFQ9UHQ1 456 aa23.96■■□□□ 1.43
PDLIM2-204ENST00000397760 PHF14O94880 888 aa23.95■■□□□ 1.42
PDLIM2-204ENST00000397760 PCCAP05165 728 aaPredicted RBP23.95■■□□□ 1.42
PDLIM2-204ENST00000397760 NUCB1Q02818 461 aa23.95■■□□□ 1.42
PDLIM2-204ENST00000397760 EPHA10Q5JZY3 1008 aa23.95■■□□□ 1.42
PDLIM2-204ENST00000397760 TRAPPC3LQ5T215 181 aa23.95■■□□□ 1.42
PDLIM2-204ENST00000397760 ZBTB38Q8NAP3 1195 aaPredicted RBP23.95■■□□□ 1.42
PDLIM2-204ENST00000397760 BCL11AQ9H165 835 aa23.95■■□□□ 1.42
PDLIM2-204ENST00000397760 UBN2Q6ZU65 1347 aa23.95■■□□□ 1.42
PDLIM2-204ENST00000397760 ZPR1O75312 459 aa23.94■■□□□ 1.42
PDLIM2-204ENST00000397760 ANKRD45Q5TZF3 282 aa23.94■■□□□ 1.42
PDLIM2-204ENST00000397760 RGL2O15211 777 aa23.94■■□□□ 1.42
PDLIM2-204ENST00000397760 FAM89AQ96GI7 184 aa23.94■■□□□ 1.42
PDLIM2-204ENST00000397760 RGS3P49796 1198 aa23.93■■□□□ 1.42
PDLIM2-204ENST00000397760 USPL1Q5W0Q7 1092 aa23.93■■□□□ 1.42
PDLIM2-204ENST00000397760 SRP68Q9UHB9 627 aaKnown RBP23.93■■□□□ 1.42
PDLIM2-204ENST00000397760 NIP7Q9Y221 180 aaKnown RBP eCLIP23.93■■□□□ 1.42
PDLIM2-204ENST00000397760 ADRA2BP18089 450 aa23.92■■□□□ 1.42
PDLIM2-204ENST00000397760 RFC4P35249 363 aa23.92■■□□□ 1.42
PDLIM2-204ENST00000397760 PARP10Q53GL7 1025 aa23.92■■□□□ 1.42
PDLIM2-204ENST00000397760 TRMT112Q9UI30 125 aaKnown RBP23.92■■□□□ 1.42
PDLIM2-204ENST00000397760 NUP98P52948 1817 aa23.92■■□□□ 1.42
PDLIM2-204ENST00000397760 RABL6Q3YEC7 729 aaPredicted RBP23.91■■□□□ 1.42
PDLIM2-204ENST00000397760 CHD1LQ86WJ1 897 aa23.91■■□□□ 1.42
PDLIM2-204ENST00000397760 BCL2L12Q9HB09 334 aa23.91■■□□□ 1.42
PDLIM2-204ENST00000397760 EXOC6BQ9Y2D4 811 aa23.91■■□□□ 1.42
PDLIM2-204ENST00000397760 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.91■■□□□ 1.42
PDLIM2-204ENST00000397760 FOXO4P98177 505 aa23.91■■□□□ 1.42
PDLIM2-204ENST00000397760 DAXXQ9UER7 740 aaPredicted RBP23.91■■□□□ 1.42
PDLIM2-204ENST00000397760 SUSD4Q5VX71 490 aa23.9■■□□□ 1.42
PDLIM2-204ENST00000397760 LNPKQ9C0E8 428 aa23.9■■□□□ 1.42
PDLIM2-204ENST00000397760 TNS1Q9HBL0 1735 aaKnown RBP23.9■■□□□ 1.42
PDLIM2-204ENST00000397760 APBB1O00213 710 aa23.89■■□□□ 1.42
PDLIM2-204ENST00000397760 SURF6O75683 361 aaKnown RBP23.89■■□□□ 1.42
PDLIM2-204ENST00000397760 SSFA2P28290 1259 aa23.89■■□□□ 1.42
PDLIM2-204ENST00000397760 LMBR1LQ6UX01 489 aa23.89■■□□□ 1.41
PDLIM2-204ENST00000397760 SYNE4Q8N205 404 aa23.89■■□□□ 1.41
PDLIM2-204ENST00000397760 UTP14AQ9BVJ6 771 aaKnown RBP23.89■■□□□ 1.41
PDLIM2-204ENST00000397760 CDHR2Q9BYE9 1310 aa23.89■■□□□ 1.41
PDLIM2-204ENST00000397760 USP42Q9H9J4 1324 aaKnown RBP23.89■■□□□ 1.41
PDLIM2-204ENST00000397760 ANKRD36CQ5JPF3 1778 aa23.88■■□□□ 1.41
PDLIM2-204ENST00000397760 FAM177BA6PVY3 158 aa23.88■■□□□ 1.41
PDLIM2-204ENST00000397760 EN1Q05925 392 aaPredicted RBP23.87■■□□□ 1.41
PDLIM2-204ENST00000397760 SF3B2Q13435 895 aaKnown RBP23.87■■□□□ 1.41
PDLIM2-204ENST00000397760 TBC1D9BQ66K14 1250 aa23.87■■□□□ 1.41
PDLIM2-204ENST00000397760 BCORQ6W2J9 1755 aa23.87■■□□□ 1.41
PDLIM2-204ENST00000397760 PLA2G12BQ9BX93 195 aa23.87■■□□□ 1.41
PDLIM2-204ENST00000397760 BICDL1Q6ZP65 573 aa23.87■■□□□ 1.41
PDLIM2-204ENST00000397760 AKT1S1Q96B36 256 aa23.87■■□□□ 1.41
PDLIM2-204ENST00000397760 CAMKK2Q96RR4 588 aa23.87■■□□□ 1.41
PDLIM2-204ENST00000397760 IRS4O14654 1257 aaPredicted RBP23.86■■□□□ 1.41
PDLIM2-204ENST00000397760 EZH2Q15910 746 aaKnown RBP23.86■■□□□ 1.41
PDLIM2-204ENST00000397760 ZNF827Q17R98 1081 aa23.86■■□□□ 1.41
PDLIM2-204ENST00000397760 TFCP2L1Q9NZI6 479 aa23.86■■□□□ 1.41
PDLIM2-204ENST00000397760 SH3TC1Q8TE82 1336 aa23.85■■□□□ 1.41
PDLIM2-204ENST00000397760 PA2G4Q9UQ80 394 aaKnown RBP23.85■■□□□ 1.41
PDLIM2-204ENST00000397760 CHMP3Q9Y3E7 222 aa23.85■■□□□ 1.41
PDLIM2-204ENST00000397760 SMARCA5O60264 1052 aaPredicted RBP23.84■■□□□ 1.41
PDLIM2-204ENST00000397760 RAB11FIP3O75154 756 aa23.84■■□□□ 1.41
PDLIM2-204ENST00000397760 HSP90AB4PQ58FF6 505 aa23.84■■□□□ 1.41
PDLIM2-204ENST00000397760 SCN7AQ01118 1682 aa23.84■■□□□ 1.41
PDLIM2-204ENST00000397760 NTSR2O95665 410 aa23.84■■□□□ 1.41
PDLIM2-204ENST00000397760 SETDB2Q96T68 719 aa23.84■■□□□ 1.41
PDLIM2-204ENST00000397760 LRRCC1Q9C099 1032 aa23.84■■□□□ 1.41
PDLIM2-204ENST00000397760 BAG6P46379 1132 aa23.83■■□□□ 1.41
PDLIM2-204ENST00000397760 RFX5P48382 616 aaPredicted RBP23.83■■□□□ 1.41
PDLIM2-204ENST00000397760 PDE8AO60658 829 aa23.82■■□□□ 1.4
PDLIM2-204ENST00000397760 UBR3Q6ZT12 1888 aa23.82■■□□□ 1.4
PDLIM2-204ENST00000397760 RGPD3A6NKT7 1758 aaPredicted RBP23.82■■□□□ 1.4
PDLIM2-204ENST00000397760 RGPD4Q7Z3J3 1758 aa23.82■■□□□ 1.4
PDLIM2-204ENST00000397760 CSF1RP07333 972 aa23.82■■□□□ 1.4
PDLIM2-204ENST00000397760 OS9Q13438 667 aaPredicted RBP23.82■■□□□ 1.4
PDLIM2-204ENST00000397760 KLHDC4Q8TBB5 520 aa23.82■■□□□ 1.4
PDLIM2-204ENST00000397760 COPRSQ9NQ92 184 aa23.81■■□□□ 1.4
PDLIM2-204ENST00000397760 PTPN12Q05209 780 aaKnown RBP23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 G3BP1Q13283 466 aaKnown RBP eCLIP23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 NUTM1Q86Y26 1132 aa23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 GYS1P13807 737 aa23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 HCLS1P14317 486 aaPredicted RBP23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 CTSWP56202 376 aa23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 C16orf71Q8IYS4 520 aaPredicted RBP23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 RHPN1Q8TCX5 695 aa23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 KIF1BPQ96EK5 621 aa23.8■■□□□ 1.4
PDLIM2-204ENST00000397760 SIL1Q9H173 461 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms