RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 NIM1KQ8IY84 436 aa12.78□□□□□ -0.36
NEDD9-203ENST00000397378 SNED1Q8TER0 1413 aa12.78□□□□□ -0.36
NEDD9-203ENST00000397378 A1BGP04217 495 aa12.77□□□□□ -0.37
NEDD9-203ENST00000397378 EIF4G2P78344 907 aaKnown RBP eCLIP12.77□□□□□ -0.37
NEDD9-203ENST00000397378 TPTE2Q6XPS3 522 aa12.77□□□□□ -0.37
NEDD9-203ENST00000397378 CDC37L1Q7L3B6 337 aa12.77□□□□□ -0.37
NEDD9-203ENST00000397378 TEX13AQ9BXU3 409 aaPredicted RBP12.77□□□□□ -0.37
NEDD9-203ENST00000397378 HDAC9Q9UKV0 1011 aa12.77□□□□□ -0.37
NEDD9-203ENST00000397378 KNSTRNQ9Y448 316 aa12.77□□□□□ -0.37
NEDD9-203ENST00000397378 HEG1Q9ULI3 1381 aa12.77□□□□□ -0.37
NEDD9-203ENST00000397378 FAM155AB1AL88 458 aaPredicted RBP12.76□□□□□ -0.37
NEDD9-203ENST00000397378 DLL1O00548 723 aa12.76□□□□□ -0.37
NEDD9-203ENST00000397378 PKN2Q16513 984 aaKnown RBP12.76□□□□□ -0.37
NEDD9-203ENST00000397378 MTHFSDQ2M296 383 aaKnown RBP12.76□□□□□ -0.37
NEDD9-203ENST00000397378 CC2D2BQ6DHV5 1058 aa12.76□□□□□ -0.37
NEDD9-203ENST00000397378 ZNF496Q96IT1 587 aaPredicted RBP12.76□□□□□ -0.37
NEDD9-203ENST00000397378 ZNF652Q9Y2D9 606 aa12.76□□□□□ -0.37
NEDD9-203ENST00000397378 CLSPNQ9HAW4 1339 aa12.76□□□□□ -0.37
NEDD9-203ENST00000397378 HMOX1P09601 288 aa12.75□□□□□ -0.37
NEDD9-203ENST00000397378 HSPA5P11021 654 aaKnown RBP12.75□□□□□ -0.37
NEDD9-203ENST00000397378 GTF2E1P29083 439 aaPredicted RBP12.75□□□□□ -0.37
NEDD9-203ENST00000397378 GMPSP49915 693 aaPredicted RBP12.75□□□□□ -0.37
NEDD9-203ENST00000397378 ZNF157P51786 506 aaPredicted RBP12.75□□□□□ -0.37
NEDD9-203ENST00000397378 CCDC102AQ96A19 550 aa12.75□□□□□ -0.37
NEDD9-203ENST00000397378 PGAP2Q9UHJ9 254 aa12.75□□□□□ -0.37
NEDD9-203ENST00000397378 NPC1L1Q9UHC9 1359 aa12.74□□□□□ -0.37
NEDD9-203ENST00000397378 PPIP5K2O43314 1243 aa12.74□□□□□ -0.37
NEDD9-203ENST00000397378 AMER1Q5JTC6 1135 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-203ENST00000397378 USP48Q86UV5 1035 aa12.74□□□□□ -0.37
NEDD9-203ENST00000397378 ZC3H15Q8WU90 426 aaKnown RBP12.74□□□□□ -0.37
NEDD9-203ENST00000397378 NIP7Q9Y221 180 aaKnown RBP eCLIP12.74□□□□□ -0.37
NEDD9-203ENST00000397378 PIP4K2AP48426 406 aaPredicted RBP12.73□□□□□ -0.37
NEDD9-203ENST00000397378 AOC3Q16853 763 aa12.73□□□□□ -0.37
NEDD9-203ENST00000397378 ZNF790Q6PG37 636 aa12.73□□□□□ -0.37
NEDD9-203ENST00000397378 CLEC4GQ6UXB4 293 aa12.73□□□□□ -0.37
NEDD9-203ENST00000397378 DLK2Q6UY11 383 aa12.73□□□□□ -0.37
NEDD9-203ENST00000397378 C2orf69Q8N8R5 385 aa12.73□□□□□ -0.37
NEDD9-203ENST00000397378 BCL2L13Q9BXK5 485 aa12.73□□□□□ -0.37
NEDD9-203ENST00000397378 GBA2Q9HCG7 927 aaPredicted RBP12.73□□□□□ -0.37
NEDD9-203ENST00000397378 TCERG1O14776 1098 aaKnown RBP12.72□□□□□ -0.37
NEDD9-203ENST00000397378 HIRAP54198 1017 aaPredicted RBP12.72□□□□□ -0.37
NEDD9-203ENST00000397378 CXCL9Q07325 125 aa12.72□□□□□ -0.37
NEDD9-203ENST00000397378 GRIPAP1Q4V328 841 aa12.72□□□□□ -0.37
NEDD9-203ENST00000397378 TRPM4Q8TD43 1214 aa12.72□□□□□ -0.37
NEDD9-203ENST00000397378 RPGRQ92834 1020 aaKnown RBP12.72□□□□□ -0.37
NEDD9-203ENST00000397378 CSRNP1Q96S65 589 aa12.72□□□□□ -0.37
NEDD9-203ENST00000397378 MKI67P46013 3256 aaKnown RBP12.72□□□□□ -0.37
NEDD9-203ENST00000397378 DIAPH1O60610 1272 aaKnown RBP12.71□□□□□ -0.37
NEDD9-203ENST00000397378 TEFQ10587 303 aa12.71□□□□□ -0.37
NEDD9-203ENST00000397378 TRIM26Q12899 539 aaPredicted RBP12.71□□□□□ -0.37
NEDD9-203ENST00000397378 FMNL2Q96PY5 1086 aa12.71□□□□□ -0.37
NEDD9-203ENST00000397378 CDHR2Q9BYE9 1310 aa12.7□□□□□ -0.38
NEDD9-203ENST00000397378 PPEF1O14829 653 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-203ENST00000397378 SLC10A3P09131 477 aa12.7□□□□□ -0.38
NEDD9-203ENST00000397378 SLC51AQ86UW1 340 aa12.7□□□□□ -0.38
NEDD9-203ENST00000397378 IL17REQ8NFR9 667 aa12.7□□□□□ -0.38
NEDD9-203ENST00000397378 ZNF296Q8WUU4 475 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-203ENST00000397378 ZNRF3Q9ULT6 936 aa12.7□□□□□ -0.38
NEDD9-203ENST00000397378 GNAT3A8MTJ3 354 aa12.69□□□□□ -0.38
NEDD9-203ENST00000397378 CRY2Q49AN0 593 aa12.69□□□□□ -0.38
NEDD9-203ENST00000397378 FBXO46Q6PJ61 603 aaPredicted RBP12.69□□□□□ -0.38
NEDD9-203ENST00000397378 KRT26Q7Z3Y9 468 aa12.69□□□□□ -0.38
NEDD9-203ENST00000397378 GAS2L2Q8NHY3 880 aa12.69□□□□□ -0.38
NEDD9-203ENST00000397378 TMX4Q9H1E5 349 aaPredicted RBP12.69□□□□□ -0.38
NEDD9-203ENST00000397378 CEMIPQ8WUJ3 1361 aa12.69□□□□□ -0.38
NEDD9-203ENST00000397378 ABCC12Q96J65 1359 aa12.69□□□□□ -0.38
NEDD9-203ENST00000397378 COL3A1P02461 1466 aaPredicted RBP12.68□□□□□ -0.38
NEDD9-203ENST00000397378 SHTN1A0MZ66 631 aa12.68□□□□□ -0.38
NEDD9-203ENST00000397378 H7C1D1 291 aa12.68□□□□□ -0.38
NEDD9-203ENST00000397378 RAD17O75943 681 aa12.68□□□□□ -0.38
NEDD9-203ENST00000397378 NUTM1Q86Y26 1132 aa12.68□□□□□ -0.38
NEDD9-203ENST00000397378 REM2Q8IYK8 340 aaPredicted RBP12.68□□□□□ -0.38
NEDD9-203ENST00000397378 SLC17A8Q8NDX2 589 aa12.68□□□□□ -0.38
NEDD9-203ENST00000397378 CNOT7Q9UIV1 285 aaKnown RBP12.68□□□□□ -0.38
NEDD9-203ENST00000397378 ADM5C9JUS6 153 aa12.67□□□□□ -0.38
NEDD9-203ENST00000397378 TBC1D8O95759 1140 aa12.67□□□□□ -0.38
NEDD9-203ENST00000397378 TNIP1Q15025 636 aa12.67□□□□□ -0.38
NEDD9-203ENST00000397378 MICALL2Q8IY33 904 aa12.67□□□□□ -0.38
NEDD9-203ENST00000397378 COLQQ9Y215 455 aaPredicted RBP12.67□□□□□ -0.38
NEDD9-203ENST00000397378 POTEFA5A3E0 1075 aa12.66□□□□□ -0.38
NEDD9-203ENST00000397378 RGL2O15211 777 aa12.66□□□□□ -0.38
NEDD9-203ENST00000397378 DCPSQ96C86 337 aaKnown RBP12.66□□□□□ -0.38
NEDD9-203ENST00000397378 RBM17Q96I25 401 aaKnown RBP12.66□□□□□ -0.38
NEDD9-203ENST00000397378 NYXQ9GZU5 481 aa12.66□□□□□ -0.38
NEDD9-203ENST00000397378 VPS33BQ9H267 617 aa12.66□□□□□ -0.38
NEDD9-203ENST00000397378 USP16Q9Y5T5 823 aa12.66□□□□□ -0.38
NEDD9-203ENST00000397378 POLR2AP24928 1970 aaKnown RBP12.66□□□□□ -0.38
NEDD9-203ENST00000397378 RIC1Q4ADV7 1423 aa12.65□□□□□ -0.38
NEDD9-203ENST00000397378 PER1O15534 1290 aaPredicted RBP12.65□□□□□ -0.38
NEDD9-203ENST00000397378 SAMD7Q7Z3H4 446 aa12.65□□□□□ -0.38
NEDD9-203ENST00000397378 RASAL3Q86YV0 1011 aa12.65□□□□□ -0.38
NEDD9-203ENST00000397378 SUPT20HQ8NEM7 779 aa12.65□□□□□ -0.38
NEDD9-203ENST00000397378 KIF7Q2M1P5 1343 aa12.64□□□□□ -0.39
NEDD9-203ENST00000397378 PAPPA2Q9BXP8 1791 aa12.64□□□□□ -0.39
NEDD9-203ENST00000397378 BTBD11A6QL63 1104 aa12.64□□□□□ -0.39
NEDD9-203ENST00000397378 HOXA10P31260 410 aaPredicted RBP12.64□□□□□ -0.39
NEDD9-203ENST00000397378 HLFQ16534 295 aa12.64□□□□□ -0.39
NEDD9-203ENST00000397378 TBC1D10BQ4KMP7 808 aaPredicted RBP12.64□□□□□ -0.39
NEDD9-203ENST00000397378 CRAMP1Q96RY5 1269 aa12.64□□□□□ -0.39
NEDD9-203ENST00000397378 NUP98P52948 1817 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms