RNA–Protein interactions for RNA: ENST00000396547.5

TRIM39-203, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene TRIM39, Length 3,187 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-203ENST00000396547 RGS12O14924 1447 aa11.71□□□□□ -0.53
TRIM39-203ENST00000396547 KIF24Q5T7B8 1368 aa11.71□□□□□ -0.53
TRIM39-203ENST00000396547 ORAI2Q96SN7 254 aa11.71□□□□□ -0.53
TRIM39-203ENST00000396547 NUP62CLQ9H1M0 184 aa11.71□□□□□ -0.53
TRIM39-203ENST00000396547 PDRG1Q9NUG6 133 aa11.71□□□□□ -0.53
TRIM39-203ENST00000396547 SLIT2O94813 1529 aa11.71□□□□□ -0.54
TRIM39-203ENST00000396547 ERICH4A6NGS2 130 aa11.71□□□□□ -0.54
TRIM39-203ENST00000396547 MAP3K11Q16584 847 aa11.71□□□□□ -0.54
TRIM39-203ENST00000396547 TNMDQ9H2S6 317 aa11.71□□□□□ -0.54
TRIM39-203ENST00000396547 TRMT1Q9NXH9 659 aaKnown RBP11.71□□□□□ -0.54
TRIM39-203ENST00000396547 DACT1Q9NYF0 836 aa11.71□□□□□ -0.54
TRIM39-203ENST00000396547 COL18A1P39060 1754 aa11.71□□□□□ -0.54
TRIM39-203ENST00000396547 SRGAP3O43295 1099 aa11.7□□□□□ -0.54
TRIM39-203ENST00000396547 TYRO3Q06418 890 aa11.7□□□□□ -0.54
TRIM39-203ENST00000396547 NCBP1Q09161 790 aaKnown RBP11.7□□□□□ -0.54
TRIM39-203ENST00000396547 PPP1R42Q7Z4L9 355 aa11.7□□□□□ -0.54
TRIM39-203ENST00000396547 MTMR6Q9Y217 621 aa11.7□□□□□ -0.54
TRIM39-203ENST00000396547 CCDC112Q8NEF3 446 aa11.7□□□□□ -0.54
TRIM39-203ENST00000396547 LTV1Q96GA3 475 aaPredicted RBP11.7□□□□□ -0.54
TRIM39-203ENST00000396547 CCDC61Q9Y6R9 512 aa11.7□□□□□ -0.54
TRIM39-203ENST00000396547 USP6P35125 1406 aa11.7□□□□□ -0.54
TRIM39-203ENST00000396547 A0A087WWV3 80 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 KIF20AO95235 890 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 MTHFSDQ2M296 383 aaKnown RBP11.69□□□□□ -0.54
TRIM39-203ENST00000396547 TAF7LQ5H9L4 462 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 TTC6Q86TZ1 520 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 SYTL4Q96C24 671 aaPredicted RBP11.69□□□□□ -0.54
TRIM39-203ENST00000396547 USP31Q70CQ4 1352 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 PTH1RQ03431 593 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 BICD2Q8TD16 824 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 TRERF1Q96PN7 1200 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 VGLL3A8MV65 326 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 SGSM2O43147 1006 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 PPFIA3O75145 1194 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 ARID5BQ14865 1188 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 FAM200AQ8TCP9 573 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 FUCA2Q9BTY2 467 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 DNAJC25Q9H1X3 360 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 CBX8Q9HC52 389 aa11.69□□□□□ -0.54
TRIM39-203ENST00000396547 FILIP1Q7Z7B0 1213 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 CNTROBQ8N137 903 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 WNK3Q9BYP7 1800 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 ANXA1P04083 346 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 CDC37L1Q7L3B6 337 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 TMEM87AQ8NBN3 555 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 RHPN1Q8TCX5 695 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 PHAXQ9H814 394 aaKnown RBP11.68□□□□□ -0.54
TRIM39-203ENST00000396547 MRVI1Q9Y6F6 885 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 ATRNO75882 1429 aa11.68□□□□□ -0.54
TRIM39-203ENST00000396547 CPDO75976 1380 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 TPM3P06753 285 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 KRT85P78386 507 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 COL9A3Q14050 684 aaPredicted RBP11.67□□□□□ -0.54
TRIM39-203ENST00000396547 ME3Q16798 604 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 ANKRD7Q92527 254 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 DDX11Q96FC9 970 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 KIF20BQ96Q89 1820 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 SALL3Q9BXA9 1300 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 CLIP2Q9UDT6 1046 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 CYP46A1Q9Y6A2 500 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 RAD50Q92878 1312 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 TTC14Q96N46 770 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 LSG1Q9H089 658 aaKnown RBP11.67□□□□□ -0.54
TRIM39-203ENST00000396547 USP44Q9H0E7 712 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 TAOK2Q9UL54 1235 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 MAP2P11137 1827 aaKnown RBP11.67□□□□□ -0.54
TRIM39-203ENST00000396547 ESCO1Q5FWF5 840 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 SPATA32Q96LK8 384 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 HYPKQ9NX55 129 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 OGFRQ9NZT2 677 aa11.67□□□□□ -0.54
TRIM39-203ENST00000396547 ZNF165P49910 485 aa11.66□□□□□ -0.54
TRIM39-203ENST00000396547 CCDC30Q5VVM6 783 aa11.66□□□□□ -0.54
TRIM39-203ENST00000396547 ZSCAN25Q6NSZ9 544 aa11.66□□□□□ -0.54
TRIM39-203ENST00000396547 KRT28Q7Z3Y7 464 aa11.66□□□□□ -0.54
TRIM39-203ENST00000396547 FNBP4Q8N3X1 1017 aaPredicted RBP11.66□□□□□ -0.54
TRIM39-203ENST00000396547 CACTINQ8WUQ7 758 aaKnown RBP11.66□□□□□ -0.54
TRIM39-203ENST00000396547 NUTM2GQ5VZR2 741 aa11.66□□□□□ -0.54
TRIM39-203ENST00000396547 STAP2Q9UGK3 403 aa11.66□□□□□ -0.54
TRIM39-203ENST00000396547 FAM208AQ9UK61 1670 aaKnown RBP11.66□□□□□ -0.54
TRIM39-203ENST00000396547 NFAT5O94916 1531 aa11.65□□□□□ -0.54
TRIM39-203ENST00000396547 TTC21AQ8NDW8 1320 aa11.65□□□□□ -0.54
TRIM39-203ENST00000396547 RAB11FIP3O75154 756 aa11.65□□□□□ -0.54
TRIM39-203ENST00000396547 CCDC144BQ3MJ40 725 aa11.65□□□□□ -0.54
TRIM39-203ENST00000396547 CEP135Q66GS9 1140 aa11.65□□□□□ -0.54
TRIM39-203ENST00000396547 CCDC144CPQ8IYA2 1237 aa11.65□□□□□ -0.54
TRIM39-203ENST00000396547 ERCC4Q92889 916 aaPredicted RBP11.65□□□□□ -0.54
TRIM39-203ENST00000396547 RGS17Q9UGC6 210 aaPredicted RBP11.65□□□□□ -0.54
TRIM39-203ENST00000396547 SOS1Q07889 1333 aaPredicted RBP11.65□□□□□ -0.54
TRIM39-203ENST00000396547 THSD7AQ9UPZ6 1657 aa11.65□□□□□ -0.55
TRIM39-203ENST00000396547 USP27XA6NNY8 438 aa11.65□□□□□ -0.55
TRIM39-203ENST00000396547 GOLGA6L19H0YKK7 550 aa11.65□□□□□ -0.55
TRIM39-203ENST00000396547 NBPF7P0C2Y1 421 aaPredicted RBP11.65□□□□□ -0.55
TRIM39-203ENST00000396547 ZNF75DP51815 510 aa11.65□□□□□ -0.55
TRIM39-203ENST00000396547 PAXIP1Q6ZW49 1069 aaPredicted RBP11.65□□□□□ -0.55
TRIM39-203ENST00000396547 ST7Q9NRC1 585 aa11.65□□□□□ -0.55
TRIM39-203ENST00000396547 CTNNA3Q9UI47 895 aa11.65□□□□□ -0.55
TRIM39-203ENST00000396547 TPCN1Q9ULQ1 816 aa11.65□□□□□ -0.55
TRIM39-203ENST00000396547 SMTNL1A8MU46 457 aa11.64□□□□□ -0.55
TRIM39-203ENST00000396547 CTIFO43310 598 aaKnown RBP11.64□□□□□ -0.55
TRIM39-203ENST00000396547 NR1I2O75469 434 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms