RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 EIF4A1P60842 406 aaKnown RBP4.01□□□□□ -1.77
VPS13C-203ENST00000395896 TRIM34Q9BYJ4 488 aa4.01□□□□□ -1.77
VPS13C-203ENST00000395896 CNNM2Q9H8M5 875 aa4.01□□□□□ -1.77
VPS13C-203ENST00000395896 LIMCH1Q9UPQ0 1083 aa4.01□□□□□ -1.77
VPS13C-203ENST00000395896 FMN2Q9NZ56 1722 aa4.01□□□□□ -1.77
VPS13C-203ENST00000395896 RGPD8O14715 1765 aaPredicted RBP4.01□□□□□ -1.77
VPS13C-203ENST00000395896 RGS12O14924 1447 aa4.01□□□□□ -1.77
VPS13C-203ENST00000395896 HSPA2P54652 639 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 MTX1Q13505 466 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 CCDC73Q6ZRK6 1079 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 CCDC47Q96A33 483 aaKnown RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 ZNF396Q96N95 335 aaPredicted RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 PYM1Q9BRP8 204 aaKnown RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 ZSCAN16Q9H4T2 348 aaPredicted RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 ZNF142P52746 1687 aaPredicted RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 PCP11498 1178 aaKnown RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 ABCC6O95255 1503 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 KINO60870 393 aaKnown RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 GPR108Q9NPR9 543 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 BECN2A8MW95 431 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 TXLNAP40222 546 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 DDX46Q7L014 1031 aaKnown RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 C1orf115Q9H7X2 142 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 TOMM22Q9NS69 142 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 RTCBQ9Y3I0 505 aaKnown RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 RGL2O15211 777 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 TRIM28Q13263 835 aaKnown RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 TTC39AQ5SRH9 613 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 FKBP4Q02790 459 aaKnown RBP eCLIP4□□□□□ -1.77
VPS13C-203ENST00000395896 XAGE3Q8WTP9 111 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 SETDB2Q96T68 719 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 SPINK5Q9NQ38 1064 aaPredicted RBP4□□□□□ -1.77
VPS13C-203ENST00000395896 LRP2BPQ9P2M1 347 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 ERVV-1B6SEH8 477 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 TBC1D9Q6ZT07 1266 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 USP44Q9H0E7 712 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 NAPBQ9H115 298 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 MIS18AQ9NYP9 233 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 F6X3S4 739 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 PLCG2P16885 1265 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 COPRSQ9NQ92 184 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 IL17REQ8NFR9 667 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 TM6SF1Q9BZW5 370 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 NFKBIBQ15653 356 aa4□□□□□ -1.77
VPS13C-203ENST00000395896 TPM1P09493 284 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 RFC4P35249 363 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 CHRNA2Q15822 529 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 USP19O94966 1318 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 SOS2Q07890 1332 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-203ENST00000395896 ZNF213O14771 459 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 DNTTIP2Q5QJE6 756 aaKnown RBP3.99□□□□□ -1.77
VPS13C-203ENST00000395896 TMC4Q7Z404 712 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 ANKRD2Q9GZV1 360 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 CRB1P82279 1406 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 BMP15O95972 392 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 GCKRQ14397 625 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 CWC27Q6UX04 472 aaKnown RBP3.99□□□□□ -1.77
VPS13C-203ENST00000395896 ZNF496Q96IT1 587 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-203ENST00000395896 ADAMTS2O95450 1211 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 PDE4BQ07343 736 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 ATP2B3Q16720 1220 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 UBAC1Q9BSL1 405 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 NRKQ7Z2Y5 1582 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 CEMIPQ8WUJ3 1361 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 NFXL1Q6ZNB6 911 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 USHBP1Q8N6Y0 703 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 IL1RAPL2Q9NP60 686 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 RLBP1P12271 317 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 IBTKQ9P2D0 1353 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-203ENST00000395896 MROH5Q6ZUA9 1318 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 SDSP20132 328 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 ATP6V1AP38606 617 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 BRINP3Q76B58 766 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 NALCNQ8IZF0 1738 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 CD163L1Q9NR16 1453 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 CTAGE5O15320 804 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 MCMDC2Q4G0Z9 681 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 PLEKHM2Q8IWE5 1019 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 MYD88Q99836 296 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 RAB34Q9BZG1 259 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 STAP2Q9UGK3 403 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 PIP4K2BP78356 416 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 GSTO1P78417 241 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 ABCC12Q96J65 1359 aa3.99□□□□□ -1.77
VPS13C-203ENST00000395896 FBLN1P23142 703 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 GIGYF2Q6Y7W6 1299 aaKnown RBP3.98□□□□□ -1.77
VPS13C-203ENST00000395896 TSPYL6Q8N831 410 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 CCDC12Q8WUD4 166 aaPredicted RBP3.98□□□□□ -1.77
VPS13C-203ENST00000395896 ADRA2BP18089 450 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 MCM5P33992 734 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 LARP1BQ659C4 914 aaKnown RBP3.98□□□□□ -1.77
VPS13C-203ENST00000395896 GTPBP4Q9BZE4 634 aaKnown RBP3.98□□□□□ -1.77
VPS13C-203ENST00000395896 CEP290O15078 2479 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 RP1L1Q8IWN7 2480 aaPredicted RBP3.98□□□□□ -1.77
VPS13C-203ENST00000395896 EYA2O00167 538 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 IGHDP01880 384 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 ST5P78524 1137 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 TSR1Q2NL82 804 aaKnown RBP3.98□□□□□ -1.77
VPS13C-203ENST00000395896 LMBR1LQ6UX01 489 aa3.98□□□□□ -1.77
VPS13C-203ENST00000395896 DZIP3Q86Y13 1208 aaKnown RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms