RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 MTX1Q13505 466 aa17.05■□□□□ 0.32
VAPB-202ENST00000395802 TFCP2L1Q9NZI6 479 aa17.05■□□□□ 0.32
VAPB-202ENST00000395802 NUP98P52948 1817 aa17.04■□□□□ 0.32
VAPB-202ENST00000395802 CAMKK2Q96RR4 588 aa17.04■□□□□ 0.32
VAPB-202ENST00000395802 ZBTB47Q9UFB7 747 aaPredicted RBP17.04■□□□□ 0.32
VAPB-202ENST00000395802 NIP7Q9Y221 180 aaKnown RBP eCLIP17.04■□□□□ 0.32
VAPB-202ENST00000395802 PHF14O94880 888 aa17.03■□□□□ 0.32
VAPB-202ENST00000395802 GPTP24298 496 aa17.03■□□□□ 0.32
VAPB-202ENST00000395802 USPL1Q5W0Q7 1092 aa17.03■□□□□ 0.32
VAPB-202ENST00000395802 TRMT112Q9UI30 125 aaKnown RBP17.03■□□□□ 0.32
VAPB-202ENST00000395802 ANKRD36CQ5JPF3 1778 aa17.03■□□□□ 0.32
VAPB-202ENST00000395802 CDHR2Q9BYE9 1310 aa17.03■□□□□ 0.32
VAPB-202ENST00000395802 USP42Q9H9J4 1324 aaKnown RBP17.03■□□□□ 0.32
VAPB-202ENST00000395802 SRGAP3O43295 1099 aa17.03■□□□□ 0.32
VAPB-202ENST00000395802 SIRT2Q8IXJ6 389 aa17.03■□□□□ 0.32
VAPB-202ENST00000395802 SMC5Q8IY18 1101 aa17.03■□□□□ 0.32
VAPB-202ENST00000395802 UTP14AQ9BVJ6 771 aaKnown RBP17.03■□□□□ 0.32
VAPB-202ENST00000395802 BCORQ6W2J9 1755 aa17.02■□□□□ 0.32
VAPB-202ENST00000395802 EN1Q05925 392 aaPredicted RBP17.02■□□□□ 0.31
VAPB-202ENST00000395802 SSH3Q8TE77 659 aa17.02■□□□□ 0.31
VAPB-202ENST00000395802 AKT1S1Q96B36 256 aa17.02■□□□□ 0.31
VAPB-202ENST00000395802 SUCLG2Q96I99 432 aa17.02■□□□□ 0.31
VAPB-202ENST00000395802 SETDB2Q96T68 719 aa17.02■□□□□ 0.31
VAPB-202ENST00000395802 NYXQ9GZU5 481 aa17.02■□□□□ 0.31
VAPB-202ENST00000395802 DCTPP1Q9H773 170 aa17.02■□□□□ 0.31
VAPB-202ENST00000395802 CASP7P55210 303 aa17.01■□□□□ 0.31
VAPB-202ENST00000395802 HSP90AB4PQ58FF6 505 aa17.01■□□□□ 0.31
VAPB-202ENST00000395802 BICC1Q9H694 974 aaKnown RBP17.01■□□□□ 0.31
VAPB-202ENST00000395802 SH3TC1Q8TE82 1336 aa17.01■□□□□ 0.31
VAPB-202ENST00000395802 SCN7AQ01118 1682 aa17.01■□□□□ 0.31
VAPB-202ENST00000395802 EZH2Q15910 746 aaKnown RBP17■□□□□ 0.31
VAPB-202ENST00000395802 PLA2G12BQ9BX93 195 aa17■□□□□ 0.31
VAPB-202ENST00000395802 UBR3Q6ZT12 1888 aa17■□□□□ 0.31
VAPB-202ENST00000395802 RABL6Q3YEC7 729 aaPredicted RBP17■□□□□ 0.31
VAPB-202ENST00000395802 STK32BQ9NY57 414 aa17■□□□□ 0.31
VAPB-202ENST00000395802 UBN2Q6ZU65 1347 aa16.99■□□□□ 0.31
VAPB-202ENST00000395802 POLA2Q14181 598 aa16.99■□□□□ 0.31
VAPB-202ENST00000395802 FAM89AQ96GI7 184 aa16.99■□□□□ 0.31
VAPB-202ENST00000395802 PNMA6EA0A0J9YXQ4 647 aa16.98■□□□□ 0.31
VAPB-202ENST00000395802 KAZALD1Q96I82 304 aa16.98■□□□□ 0.31
VAPB-202ENST00000395802 TSHZ2Q9NRE2 1034 aa16.98■□□□□ 0.31
VAPB-202ENST00000395802 IRS4O14654 1257 aaPredicted RBP16.98■□□□□ 0.31
VAPB-202ENST00000395802 RAB11FIP3O75154 756 aa16.98■□□□□ 0.31
VAPB-202ENST00000395802 GTF2E1P29083 439 aaPredicted RBP16.98■□□□□ 0.31
VAPB-202ENST00000395802 SUSD4Q5VX71 490 aa16.98■□□□□ 0.31
VAPB-202ENST00000395802 TPTE2Q6XPS3 522 aa16.98■□□□□ 0.31
VAPB-202ENST00000395802 SRP68Q9UHB9 627 aaKnown RBP16.98■□□□□ 0.31
VAPB-202ENST00000395802 PDE8AO60658 829 aa16.97■□□□□ 0.31
VAPB-202ENST00000395802 RTL5Q5HYW3 569 aaPredicted RBP16.97■□□□□ 0.31
VAPB-202ENST00000395802 BCL2L12Q9HB09 334 aa16.97■□□□□ 0.31
VAPB-202ENST00000395802 SLC15A2Q16348 729 aa16.96■□□□□ 0.31
VAPB-202ENST00000395802 ZNF827Q17R98 1081 aa16.96■□□□□ 0.31
VAPB-202ENST00000395802 TBC1D9BQ66K14 1250 aa16.96■□□□□ 0.31
VAPB-202ENST00000395802 AMIGO3Q86WK7 504 aa16.96■□□□□ 0.31
VAPB-202ENST00000395802 ERC1Q8IUD2 1116 aa16.96■□□□□ 0.31
VAPB-202ENST00000395802 NLGN1Q8N2Q7 840 aa16.96■□□□□ 0.31
VAPB-202ENST00000395802 CARMIL3Q8ND23 1372 aa16.96■□□□□ 0.31
VAPB-202ENST00000395802 C4AP0C0L4 1744 aa16.96■□□□□ 0.31
VAPB-202ENST00000395802 SURF6O75683 361 aaKnown RBP16.96■□□□□ 0.3
VAPB-202ENST00000395802 NUCB1Q02818 461 aa16.96■□□□□ 0.3
VAPB-202ENST00000395802 ANKRD45Q5TZF3 282 aa16.96■□□□□ 0.3
VAPB-202ENST00000395802 LMBR1LQ6UX01 489 aa16.96■□□□□ 0.3
VAPB-202ENST00000395802 NBPF5PQ86XG9 351 aaPredicted RBP16.96■□□□□ 0.3
VAPB-202ENST00000395802 JARID2Q92833 1246 aaPredicted RBP16.96■□□□□ 0.3
VAPB-202ENST00000395802 CHMP3Q9Y3E7 222 aa16.96■□□□□ 0.3
VAPB-202ENST00000395802 NPHP1O15259 732 aa16.95■□□□□ 0.3
VAPB-202ENST00000395802 MSH5O43196 834 aa16.95■□□□□ 0.3
VAPB-202ENST00000395802 NTSR2O95665 410 aa16.95■□□□□ 0.3
VAPB-202ENST00000395802 GYS1P13807 737 aa16.95■□□□□ 0.3
VAPB-202ENST00000395802 FOXO4P98177 505 aa16.95■□□□□ 0.3
VAPB-202ENST00000395802 CCDC57Q2TAC2 916 aa16.95■□□□□ 0.3
VAPB-202ENST00000395802 BICDL1Q6ZP65 573 aa16.95■□□□□ 0.3
VAPB-202ENST00000395802 CHD1LQ86WJ1 897 aa16.95■□□□□ 0.3
VAPB-202ENST00000395802 NOP58Q9Y2X3 529 aaKnown RBP16.95■□□□□ 0.3
VAPB-202ENST00000395802 DEFB132Q7Z7B7 95 aa16.94■□□□□ 0.3
VAPB-202ENST00000395802 PDZRN3Q9UPQ7 1066 aa16.94■□□□□ 0.3
VAPB-202ENST00000395802 CSF1RP07333 972 aa16.93■□□□□ 0.3
VAPB-202ENST00000395802 G3BP1Q13283 466 aaKnown RBP eCLIP16.93■□□□□ 0.38e-6■■□□□ 11.5
VAPB-202ENST00000395802 OS9Q13438 667 aaPredicted RBP16.93■□□□□ 0.3
VAPB-202ENST00000395802 EPHA10Q5JZY3 1008 aa16.93■□□□□ 0.3
VAPB-202ENST00000395802 SMIM5Q71RC9 77 aa16.93■□□□□ 0.3
VAPB-202ENST00000395802 LRRCC1Q9C099 1032 aa16.93■□□□□ 0.3
VAPB-202ENST00000395802 COPRSQ9NQ92 184 aa16.93■□□□□ 0.3
VAPB-202ENST00000395802 FAM177BA6PVY3 158 aa16.93■□□□□ 0.3
VAPB-202ENST00000395802 CTSWP56202 376 aa16.93■□□□□ 0.3
VAPB-202ENST00000395802 IFIT5Q13325 482 aaKnown RBP16.93■□□□□ 0.3
VAPB-202ENST00000395802 COL23A1Q86Y22 540 aaPredicted RBP16.93■□□□□ 0.3
VAPB-202ENST00000395802 FBXO3Q9UK99 471 aa16.93■□□□□ 0.3
VAPB-202ENST00000395802 CCDC152Q4G0S7 254 aa16.92■□□□□ 0.3
VAPB-202ENST00000395802 SLC10A5Q5PT55 438 aa16.92■□□□□ 0.3
VAPB-202ENST00000395802 SKAP1Q86WV1 359 aa16.92■□□□□ 0.3
VAPB-202ENST00000395802 KIF1BPQ96EK5 621 aa16.92■□□□□ 0.3
VAPB-202ENST00000395802 EXOC6BQ9Y2D4 811 aa16.92■□□□□ 0.3
VAPB-202ENST00000395802 PNPLA7Q6ZV29 1317 aa16.91■□□□□ 0.3
VAPB-202ENST00000395802 NFIXQ14938 502 aa16.91■□□□□ 0.3
VAPB-202ENST00000395802 TAF7LQ5H9L4 462 aa16.91■□□□□ 0.3
VAPB-202ENST00000395802 CNBD1Q8NA66 436 aa16.91■□□□□ 0.3
VAPB-202ENST00000395802 TTLL11Q8NHH1 800 aa16.91■□□□□ 0.3
VAPB-202ENST00000395802 ANKRD18BA2A2Z9 1011 aa16.9■□□□□ 0.3
VAPB-202ENST00000395802 TM4SF1P30408 202 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms