RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 VTI1AQ96AJ9 217 aa8.51□□□□□ -1.05
SYNE2-205ENST00000394768 HMG20BQ9P0W2 317 aa8.51□□□□□ -1.05
SYNE2-205ENST00000394768 CRNKL1Q9BZJ0 848 aaKnown RBP8.51□□□□□ -1.05
SYNE2-205ENST00000394768 EXOC1Q9NV70 894 aa8.51□□□□□ -1.05
SYNE2-205ENST00000394768 CCDC183Q5T5S1 534 aa8.51□□□□□ -1.05
SYNE2-205ENST00000394768 CNNM3Q8NE01 707 aa8.51□□□□□ -1.05
SYNE2-205ENST00000394768 PPP1R9BQ96SB3 815 aa8.51□□□□□ -1.05
SYNE2-205ENST00000394768 SH3BP5O60239 455 aa8.51□□□□□ -1.05
SYNE2-205ENST00000394768 CHD1LQ86WJ1 897 aa8.51□□□□□ -1.05
SYNE2-205ENST00000394768 ERCC6LQ2NKX8 1250 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 TCERG1LQ5VWI1 586 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 PUF60Q9UHX1 559 aaKnown RBP8.5□□□□□ -1.05
SYNE2-205ENST00000394768 PLCG2P16885 1265 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 AFAP1L2Q8N4X5 818 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 FBF1Q8TES7 1133 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 RANBP6O60518 1105 aaKnown RBP8.5□□□□□ -1.05
SYNE2-205ENST00000394768 UBA7P41226 1012 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 PSMD1Q99460 953 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 CGNQ9P2M7 1197 aaKnown RBP8.5□□□□□ -1.05
SYNE2-205ENST00000394768 FAM184BQ9ULE4 1060 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 TUBB4AP04350 444 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 CKAP2LQ8IYA6 745 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 HOOK2Q96ED9 719 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 CAMSAP2Q08AD1 1489 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 TMCO5BA8MYB1 307 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 PHACTR2O75167 634 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 CTR9Q6PD62 1173 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 CNNM2Q9H8M5 875 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 TSHZ2Q9NRE2 1034 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 BCCIPQ9P287 314 aaKnown RBP eCLIP8.5□□□□□ -1.05
SYNE2-205ENST00000394768 RBM25P49756 843 aaKnown RBP8.5□□□□□ -1.05
SYNE2-205ENST00000394768 DYNC1I1O14576 645 aa8.5□□□□□ -1.05
SYNE2-205ENST00000394768 C6orf50Q9HD87 102 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 SH2D4AQ9H788 454 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 RBM26Q5T8P6 1007 aaKnown RBP8.49□□□□□ -1.05
SYNE2-205ENST00000394768 STX1AQ16623 288 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 CALCOCO1Q9P1Z2 691 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 TTC21BQ7Z4L5 1316 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 LMOD1P29536 600 aaPredicted RBP8.49□□□□□ -1.05
SYNE2-205ENST00000394768 NAP1L3Q99457 506 aaPredicted RBP8.49□□□□□ -1.05
SYNE2-205ENST00000394768 KRT23Q9C075 422 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 POLD1P28340 1107 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 HSPA4P34932 840 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 SPAG1Q07617 926 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 BEGAINQ9BUH8 593 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 TBC1D31Q96DN5 1066 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 DDX19AQ9NUU7 478 aaKnown RBP8.49□□□□□ -1.05
SYNE2-205ENST00000394768 STK24Q9Y6E0 443 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 MFSD6Q6ZSS7 791 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 CERS3Q8IU89 383 aa8.49□□□□□ -1.05
SYNE2-205ENST00000394768 SMARCC1Q92922 1105 aaPredicted RBP8.48□□□□□ -1.05
SYNE2-205ENST00000394768 LRRC9Q6ZRR7 1453 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 RFC4P35249 363 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 RAB3IPQ96QF0 476 aaPredicted RBP8.48□□□□□ -1.05
SYNE2-205ENST00000394768 ERBINQ96RT1 1412 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 PTPRCP08575 1304 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 HSF2BPO75031 334 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 GOLGA1Q92805 767 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 MX1P20591 662 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 ALDH1L2Q3SY69 923 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 CCDC152Q4G0S7 254 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 NAP1L4Q99733 375 aaKnown RBP8.48□□□□□ -1.05
SYNE2-205ENST00000394768 CSRNP2Q9H175 543 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 TRMT112Q9UI30 125 aaKnown RBP8.48□□□□□ -1.05
SYNE2-205ENST00000394768 PSMC4P43686 418 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 WDR70Q9NW82 654 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 IFT140Q96RY7 1462 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 GOLGA8BA8MQT2 603 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 C6orf229H3BNL8 230 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 UQCRFS1P1P0C7P4 283 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 TNNI2P48788 182 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 PRPF4BQ13523 1007 aaKnown RBP8.48□□□□□ -1.05
SYNE2-205ENST00000394768 SRGAP1Q7Z6B7 1085 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 NYXQ9GZU5 481 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 KLHL10Q6JEL2 608 aa8.48□□□□□ -1.05
SYNE2-205ENST00000394768 SPDYE3A6NKU9 549 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 IFIT3O14879 490 aaKnown RBP8.47□□□□□ -1.05
SYNE2-205ENST00000394768 LPXNO60711 386 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 PPFIBP2Q8ND30 876 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 EXOC5O00471 708 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 MXRA7P84157 204 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 BIRC2Q13490 618 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 CUL7Q14999 1698 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 ZNF804AQ7Z570 1209 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 NGLY1Q96IV0 654 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 ZSCAN16Q9H4T2 348 aaPredicted RBP8.47□□□□□ -1.05
SYNE2-205ENST00000394768 UQCRHLA0A096LP55 91 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 TSPY2A6NKD2 308 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 CALM1P0DP23 149 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 CALM2P0DP24 149 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 CALM3P0DP25 149 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 TPD52P55327 224 aaPredicted RBP8.47□□□□□ -1.05
SYNE2-205ENST00000394768 EXOSC9Q06265 439 aaKnown RBP8.47□□□□□ -1.05
SYNE2-205ENST00000394768 CFAP58Q5T655 872 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 CYLC1P35663 651 aaPredicted RBP8.47□□□□□ -1.05
SYNE2-205ENST00000394768 EVI5LQ96CN4 794 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 NSD2O96028 1365 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 ZFYP08048 801 aaPredicted RBP8.47□□□□□ -1.05
SYNE2-205ENST00000394768 ATP5DP30049 168 aa8.47□□□□□ -1.05
SYNE2-205ENST00000394768 CCDC61Q9Y6R9 512 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms