RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 NBPF4Q96M43 638 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 PHF8Q9UPP1 1060 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 MAP3K2Q9Y2U5 619 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 RFX7Q2KHR2 1363 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 RNMTO43148 476 aaKnown RBP11.89□□□□□ -0.51
COL17A1-203ENST00000393211 GIGYF1O75420 1035 aaPredicted RBP11.89□□□□□ -0.51
COL17A1-203ENST00000393211 CAVIN2O95810 425 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 G3BP1Q13283 466 aaKnown RBP eCLIP11.89□□□□□ -0.51
COL17A1-203ENST00000393211 MAP3K11Q16584 847 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 ZNF530Q6P9A1 599 aaPredicted RBP11.89□□□□□ -0.51
COL17A1-203ENST00000393211 GIMAP6Q6P9H5 292 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 AACSQ86V21 672 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 KIAA1524Q8TCG1 905 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 DDX19AQ9NUU7 478 aaKnown RBP11.89□□□□□ -0.51
COL17A1-203ENST00000393211 ADAMTS7Q9UKP4 1686 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 SIPA1L3O60292 1781 aaPredicted RBP11.88□□□□□ -0.51
COL17A1-203ENST00000393211 CAMTA1Q9Y6Y1 1673 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 VPS37CA5D8V6 355 aaPredicted RBP11.88□□□□□ -0.51
COL17A1-203ENST00000393211 GRM8O00222 908 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 SLC27A2O14975 620 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 KCNJ4P48050 445 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 ST3GAL1Q11201 340 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 KRT32Q14532 448 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 NUTM2GQ5VZR2 741 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 BLOC1S2Q6QNY1 142 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 RBM43Q6ZSC3 357 aaKnown RBP11.88□□□□□ -0.51
COL17A1-203ENST00000393211 TICAM2Q86XR7 235 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 SMAP1Q8IYB5 467 aaPredicted RBP11.88□□□□□ -0.51
COL17A1-203ENST00000393211 USHBP1Q8N6Y0 703 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 PKNOX2Q96KN3 472 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 CCDC94Q9BW85 323 aaPredicted RBP11.88□□□□□ -0.51
COL17A1-203ENST00000393211 NUP62CLQ9H1M0 184 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 TPCN1Q9ULQ1 816 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 NPHP3Q7Z494 1330 aa11.88□□□□□ -0.51
COL17A1-203ENST00000393211 MED23Q9ULK4 1368 aa11.87□□□□□ -0.51
COL17A1-203ENST00000393211 CPA1P15085 419 aa11.87□□□□□ -0.51
COL17A1-203ENST00000393211 KCNA6P17658 529 aa11.87□□□□□ -0.51
COL17A1-203ENST00000393211 RPS6KB1P23443 525 aa11.87□□□□□ -0.51
COL17A1-203ENST00000393211 CHAF1AQ13111 956 aaPredicted RBP11.87□□□□□ -0.51
COL17A1-203ENST00000393211 NMIQ13287 307 aaPredicted RBP11.87□□□□□ -0.51
COL17A1-203ENST00000393211 C1orf141Q5JVX7 400 aa11.87□□□□□ -0.51
COL17A1-203ENST00000393211 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.87□□□□□ -0.51
COL17A1-203ENST00000393211 TTC12Q9H892 705 aaPredicted RBP11.87□□□□□ -0.51
COL17A1-203ENST00000393211 KIF3AQ9Y496 699 aa11.87□□□□□ -0.51
COL17A1-203ENST00000393211 KCNQ3O43525 872 aa11.86□□□□□ -0.51
COL17A1-203ENST00000393211 USPL1Q5W0Q7 1092 aa11.86□□□□□ -0.51
COL17A1-203ENST00000393211 TTC6Q86TZ1 520 aa11.86□□□□□ -0.51
COL17A1-203ENST00000393211 DDX21Q9NR30 783 aaKnown RBP eCLIP11.86□□□□□ -0.51
COL17A1-203ENST00000393211 NPHP4O75161 1426 aaPredicted RBP11.86□□□□□ -0.51
COL17A1-203ENST00000393211 SASH1O94885 1247 aa11.86□□□□□ -0.51
COL17A1-203ENST00000393211 ZNF830Q96NB3 372 aaPredicted RBP11.86□□□□□ -0.51
COL17A1-203ENST00000393211 LARP6Q9BRS8 491 aaKnown RBP11.86□□□□□ -0.51
COL17A1-203ENST00000393211 SLIT3O75094 1523 aa11.85□□□□□ -0.51
COL17A1-203ENST00000393211 FER1L4A9Z1Z3 1794 aa11.85□□□□□ -0.51
COL17A1-203ENST00000393211 COL15A1P39059 1388 aa11.85□□□□□ -0.51
COL17A1-203ENST00000393211 GOLGA6L4A6NEF3 574 aa11.85□□□□□ -0.51
COL17A1-203ENST00000393211 TYRO3Q06418 890 aa11.85□□□□□ -0.51
COL17A1-203ENST00000393211 LARP1Q6PKG0 1096 aaKnown RBP11.85□□□□□ -0.51
COL17A1-203ENST00000393211 EAF2Q96CJ1 260 aaPredicted RBP11.85□□□□□ -0.51
COL17A1-203ENST00000393211 CLSTN2Q9H4D0 955 aa11.85□□□□□ -0.51
COL17A1-203ENST00000393211 MRVI1Q9Y6F6 885 aa11.85□□□□□ -0.51
COL17A1-203ENST00000393211 RGPD2P0DJD1 1756 aa11.85□□□□□ -0.51
COL17A1-203ENST00000393211 CEBPAP49715 358 aaPredicted RBP11.84□□□□□ -0.51
COL17A1-203ENST00000393211 NECAB1Q8N987 351 aa11.84□□□□□ -0.51
COL17A1-203ENST00000393211 SUCLG2Q96I99 432 aa11.84□□□□□ -0.51
COL17A1-203ENST00000393211 SPATA32Q96LK8 384 aa11.84□□□□□ -0.51
COL17A1-203ENST00000393211 FAM227BQ96M60 508 aa11.84□□□□□ -0.51
COL17A1-203ENST00000393211 FSD1Q9BTV5 496 aa11.84□□□□□ -0.51
COL17A1-203ENST00000393211 TNMDQ9H2S6 317 aa11.84□□□□□ -0.51
COL17A1-203ENST00000393211 ZSCAN16Q9H4T2 348 aaPredicted RBP11.84□□□□□ -0.51
COL17A1-203ENST00000393211 PA2G4Q9UQ80 394 aaKnown RBP11.84□□□□□ -0.51
COL17A1-203ENST00000393211 AP5Z1O43299 807 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 ANXA1P04083 346 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 ATP5JP18859 108 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 CDC25BP30305 580 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 TOB2Q14106 344 aaPredicted RBP11.83□□□□□ -0.52
COL17A1-203ENST00000393211 SYCP1Q15431 976 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 MPRIPQ6WCQ1 1025 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 CDC37L1Q7L3B6 337 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 C14orf37Q86TY3 774 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 PIAS4Q8N2W9 510 aaPredicted RBP11.83□□□□□ -0.52
COL17A1-203ENST00000393211 TDRD7Q8NHU6 1098 aaKnown RBP11.83□□□□□ -0.52
COL17A1-203ENST00000393211 LEO1Q8WVC0 666 aaPredicted RBP11.83□□□□□ -0.52
COL17A1-203ENST00000393211 CHMP4CQ96CF2 233 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 KAZALD1Q96I82 304 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 KCNF1Q9H3M0 494 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 BICC1Q9H694 974 aaKnown RBP11.83□□□□□ -0.52
COL17A1-203ENST00000393211 PLEKHG2Q9H7P9 1386 aa11.83□□□□□ -0.52
COL17A1-203ENST00000393211 A0A0D9SFI3 127 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 NEXNQ0ZGT2 675 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 CWF19L2Q2TBE0 894 aaKnown RBP11.82□□□□□ -0.52
COL17A1-203ENST00000393211 ATL3Q6DD88 541 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 LLPHQ9BRT6 129 aaKnown RBP11.82□□□□□ -0.52
COL17A1-203ENST00000393211 COPRSQ9NQ92 184 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 CFAP45Q9UL16 551 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 U3KPZ7 1027 aaPredicted RBP11.82□□□□□ -0.52
COL17A1-203ENST00000393211 CTAGE5O15320 804 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 CTIFO43310 598 aaKnown RBP11.82□□□□□ -0.52
COL17A1-203ENST00000393211 TAF5LO75529 589 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 LIG1P18858 919 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms