RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 H0YIN7 160 aa12.43□□□□□ -0.42
COL6A3-205ENST00000392004 SNAP23O00161 211 aa12.43□□□□□ -0.42
COL6A3-205ENST00000392004 ARHGEF1Q92888 912 aaKnown RBP12.43□□□□□ -0.42
COL6A3-205ENST00000392004 TCIRG1Q13488 830 aa12.43□□□□□ -0.42
COL6A3-205ENST00000392004 UBR1Q8IWV7 1749 aa12.43□□□□□ -0.42
COL6A3-205ENST00000392004 GNL2Q13823 731 aaKnown RBP12.42□□□□□ -0.42
COL6A3-205ENST00000392004 GCKRQ14397 625 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 SETBP1Q9Y6X0 1596 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 SERPINB2P05120 415 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 DZIP1Q86YF9 867 aaKnown RBP12.42□□□□□ -0.42
COL6A3-205ENST00000392004 AMOTL1Q8IY63 956 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 CNTROBQ8N137 903 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 NYXQ9GZU5 481 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 IQGAP1P46940 1657 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 IKQ13123 557 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-205ENST00000392004 TTLL12Q14166 644 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-205ENST00000392004 ARHGAP27Q6ZUM4 889 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 HSCBQ8IWL3 235 aa12.42□□□□□ -0.42
COL6A3-205ENST00000392004 PNMA6EA0A0J9YXQ4 647 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 MINDY4BA8MYZ0 360 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 ATP2B3Q16720 1220 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 VPS53Q5VIR6 699 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 OVOS2A0A0J9YW53 1432 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 OVOS2Q6IE36 1432 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 ITPK1Q13572 414 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 SEC31BQ9NQW1 1179 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 UFL1O94874 794 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 SLC5A1P13866 664 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 GCC1Q96CN9 775 aa12.41□□□□□ -0.42
COL6A3-205ENST00000392004 TFCP2Q12800 502 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 RUFY2Q8WXA3 655 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 PIBF1Q8WXW3 757 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 GOLGA6L3A6NEY3 463 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 LRRFIP1Q32MZ4 808 aaKnown RBP12.4□□□□□ -0.42
COL6A3-205ENST00000392004 C2CD5Q86YS7 1000 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 RHPN1Q8TCX5 695 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 GPR101Q96P66 508 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-205ENST00000392004 NEURL1BA8MQ27 555 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 TRDNQ13061 729 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 NFXL1Q6ZNB6 911 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 NLGN1Q8N2Q7 840 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 JDP2Q8WYK2 163 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 DLC1Q96QB1 1528 aa12.4□□□□□ -0.42
COL6A3-205ENST00000392004 ALDH1L1O75891 902 aa12.4□□□□□ -0.43
COL6A3-205ENST00000392004 MX1P20591 662 aa12.4□□□□□ -0.43
COL6A3-205ENST00000392004 HMGB2P26583 209 aaKnown RBP12.4□□□□□ -0.43
COL6A3-205ENST00000392004 ERFEQ4G0M1 354 aa12.4□□□□□ -0.43
COL6A3-205ENST00000392004 PPLO60437 1756 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 HEG1Q9ULI3 1381 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 NBPF26B4DH59 902 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 PPFIA3O75145 1194 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 DOK7Q18PE1 504 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 NBPF10Q6P3W6 841 aaKnown RBP12.39□□□□□ -0.43
COL6A3-205ENST00000392004 NBPF15Q8N660 670 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 CDK12Q9NYV4 1490 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-205ENST00000392004 ZKSCAN1P17029 563 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-205ENST00000392004 CCDC191Q8NCU4 936 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 USP44Q9H0E7 712 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 AKAP2Q9Y2D5 859 aa12.39□□□□□ -0.43
COL6A3-205ENST00000392004 IL6STP40189 918 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-205ENST00000392004 TDO2P48775 406 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 LARGE2Q8N3Y3 721 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 OTUD7AQ8TE49 926 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-205ENST00000392004 RALYLQ86SE5 291 aaKnown RBP12.38□□□□□ -0.43
COL6A3-205ENST00000392004 GREM2Q9H772 168 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 MAP3K15Q6ZN16 1313 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 NEURL4Q96JN8 1562 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 PRKG1Q13976 671 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 GIGYF2Q6Y7W6 1299 aaKnown RBP12.38□□□□□ -0.43
COL6A3-205ENST00000392004 AIDAQ96BJ3 306 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 ZNF408Q9H9D4 720 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 VEZTQ9HBM0 779 aa12.38□□□□□ -0.43
COL6A3-205ENST00000392004 CYP19A1P11511 503 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-205ENST00000392004 PARP10Q53GL7 1025 aa12.37□□□□□ -0.43
COL6A3-205ENST00000392004 SUSD4Q5VX71 490 aa12.37□□□□□ -0.43
COL6A3-205ENST00000392004 LINC00116Q8NCU8 138 aa12.37□□□□□ -0.43
COL6A3-205ENST00000392004 LARP6Q9BRS8 491 aaKnown RBP12.37□□□□□ -0.43
COL6A3-205ENST00000392004 PUS3Q9BZE2 481 aaKnown RBP12.37□□□□□ -0.43
COL6A3-205ENST00000392004 TBC1D9BQ66K14 1250 aa12.37□□□□□ -0.43
COL6A3-205ENST00000392004 DPP8Q6V1X1 898 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-205ENST00000392004 MIGA1Q8NAN2 632 aa12.37□□□□□ -0.43
COL6A3-205ENST00000392004 HAND2P61296 217 aa12.37□□□□□ -0.43
COL6A3-205ENST00000392004 RPS8P62241 208 aaKnown RBP12.37□□□□□ -0.43
COL6A3-205ENST00000392004 PICALMQ13492 652 aa12.37□□□□□ -0.43
COL6A3-205ENST00000392004 FNBP4Q8N3X1 1017 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-205ENST00000392004 DCCP43146 1447 aa12.37□□□□□ -0.43
COL6A3-205ENST00000392004 PDE8AO60658 829 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 CHRNA5P30532 468 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 USP5P45974 858 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 CEP85Q6P2H3 762 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 ADAMTSL3P82987 1691 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 GZF1Q9H116 711 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-205ENST00000392004 IQSEC2Q5JU85 1478 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 MPHOSPH10O00566 681 aaKnown RBP12.36□□□□□ -0.43
COL6A3-205ENST00000392004 RPS6KA4O75676 772 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 LRRC24Q50LG9 513 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 INTS3Q68E01 1043 aaKnown RBP12.36□□□□□ -0.43
COL6A3-205ENST00000392004 TBC1D9Q6ZT07 1266 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 BARGINQ6ZT62 677 aa12.36□□□□□ -0.43
COL6A3-205ENST00000392004 ARHGAP45Q92619 1136 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms