RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 PDRG1Q9NUG6 133 aa23.45■■□□□ 1.34
SHROOM1-202ENST00000378676 SMC3Q9UQE7 1217 aa23.45■■□□□ 1.34
SHROOM1-202ENST00000378676 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.45■■□□□ 1.34
SHROOM1-202ENST00000378676 NEURL1BA8MQ27 555 aa23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 XAGE3Q8WTP9 111 aa23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 RAPGEF4Q8WZA2 1011 aa23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 ZSWIM6Q9HCJ5 1215 aa23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 NLRP2Q9NX02 1062 aa23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 RBM8AQ9Y5S9 174 aaKnown RBP23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 PHKG2P15735 406 aa23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 COL9A3Q14050 684 aaPredicted RBP23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 VPS53Q5VIR6 699 aa23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 TSPY26PQ9H489 355 aa23.44■■□□□ 1.34
SHROOM1-202ENST00000378676 PKD1L3Q7Z443 1732 aa23.43■■□□□ 1.34
SHROOM1-202ENST00000378676 NFATC2IPQ8NCF5 419 aa23.43■■□□□ 1.34
SHROOM1-202ENST00000378676 SYAP1Q96A49 352 aaPredicted RBP23.43■■□□□ 1.34
SHROOM1-202ENST00000378676 PKNOX2Q96KN3 472 aa23.43■■□□□ 1.34
SHROOM1-202ENST00000378676 F13A1P00488 732 aa23.43■■□□□ 1.34
SHROOM1-202ENST00000378676 LARP1Q6PKG0 1096 aaKnown RBP23.43■■□□□ 1.34
SHROOM1-202ENST00000378676 MYD88Q99836 296 aa23.43■■□□□ 1.34
SHROOM1-202ENST00000378676 TM6SF1Q9BZW5 370 aa23.43■■□□□ 1.34
SHROOM1-202ENST00000378676 GLI3P10071 1580 aa23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 A0A0D9SFI3 127 aa23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 DDX17Q92841 729 aaKnown RBP23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 BOLA2Q9H3K6 86 aa23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 MSNP26038 577 aaKnown RBP23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 PIP4K2AP48426 406 aaPredicted RBP23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 GCKRQ14397 625 aa23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 HS1BP3Q53T59 392 aa23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 CREB3L3Q68CJ9 461 aa23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 COPS6Q7L5N1 327 aa23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 ZNF496Q96IT1 587 aaPredicted RBP23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 CYP46A1Q9Y6A2 500 aa23.42■■□□□ 1.34
SHROOM1-202ENST00000378676 LAMB4A4D0S4 1761 aa23.41■■□□□ 1.34
SHROOM1-202ENST00000378676 GJB2P29033 226 aa23.41■■□□□ 1.34
SHROOM1-202ENST00000378676 STRCP1A6NGW2 1772 aa23.41■■□□□ 1.34
SHROOM1-202ENST00000378676 TATP17735 454 aaPredicted RBP23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 LRP10Q7Z4F1 713 aa23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 JARID2Q92833 1246 aaPredicted RBP23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 MAP4K1Q92918 833 aa23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 METTL22Q9BUU2 404 aaPredicted RBP23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 ABCC6O95255 1503 aa23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 MED23Q9ULK4 1368 aa23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 NEXNQ0ZGT2 675 aa23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 TPRNQ4KMQ1 711 aa23.4■■□□□ 1.34
SHROOM1-202ENST00000378676 ME3Q16798 604 aa23.39■■□□□ 1.33
SHROOM1-202ENST00000378676 FSD1Q9BTV5 496 aa23.39■■□□□ 1.33
SHROOM1-202ENST00000378676 C19orf44Q9H6X5 657 aa23.39■■□□□ 1.33
SHROOM1-202ENST00000378676 SNRKQ9NRH2 765 aa23.39■■□□□ 1.33
SHROOM1-202ENST00000378676 NOL7Q9UMY1 257 aaKnown RBP23.39■■□□□ 1.33
SHROOM1-202ENST00000378676 SLC27A2O14975 620 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 MTMR6Q9Y217 621 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 USP16Q9Y5T5 823 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 STRCQ7RTU9 1775 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 HIP1O00291 1037 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 FIBPO43427 364 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 KCNJ4P48050 445 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 NECAB1Q8N987 351 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 TAF6LQ9Y6J9 622 aa23.38■■□□□ 1.33
SHROOM1-202ENST00000378676 ZKSCAN1P17029 563 aaPredicted RBP23.37■■□□□ 1.33
SHROOM1-202ENST00000378676 ZSCAN31Q96LW9 406 aaPredicted RBP23.37■■□□□ 1.33
SHROOM1-202ENST00000378676 SH2B1Q9NRF2 756 aaPredicted RBP23.37■■□□□ 1.33
SHROOM1-202ENST00000378676 EDC3Q96F86 508 aaKnown RBP23.37■■□□□ 1.33
SHROOM1-202ENST00000378676 TPCN1Q9ULQ1 816 aa23.37■■□□□ 1.33
SHROOM1-202ENST00000378676 PHF14O94880 888 aa23.36■■□□□ 1.33
SHROOM1-202ENST00000378676 ZNF589Q86UQ0 364 aaPredicted RBP23.36■■□□□ 1.33
SHROOM1-202ENST00000378676 CABLES1Q8TDN4 633 aa23.36■■□□□ 1.33
SHROOM1-202ENST00000378676 JCADQ9P266 1359 aa23.36■■□□□ 1.33
SHROOM1-202ENST00000378676 RFX5P48382 616 aaPredicted RBP23.35■■□□□ 1.33
SHROOM1-202ENST00000378676 CCDC183Q5T5S1 534 aa23.35■■□□□ 1.33
SHROOM1-202ENST00000378676 IFNL2Q8IZJ0 200 aa23.35■■□□□ 1.33
SHROOM1-202ENST00000378676 CYP27B1O15528 508 aa23.35■■□□□ 1.33
SHROOM1-202ENST00000378676 UBE2HP62256 183 aa23.35■■□□□ 1.33
SHROOM1-202ENST00000378676 TCEANC2Q96MN5 208 aa23.35■■□□□ 1.33
SHROOM1-202ENST00000378676 TMEM94Q12767 1356 aa23.35■■□□□ 1.33
SHROOM1-202ENST00000378676 PARP4Q9UKK3 1724 aaKnown RBP23.34■■□□□ 1.33
SHROOM1-202ENST00000378676 DNM1Q05193 864 aaKnown RBP23.34■■□□□ 1.33
SHROOM1-202ENST00000378676 ANKRD13DQ6ZTN6 518 aa23.34■■□□□ 1.33
SHROOM1-202ENST00000378676 CHRNA2Q15822 529 aa23.34■■□□□ 1.33
SHROOM1-202ENST00000378676 OFD1O75665 1012 aa23.33■■□□□ 1.33
SHROOM1-202ENST00000378676 CSB-PGBD3P0DP91 1061 aa23.33■■□□□ 1.33
SHROOM1-202ENST00000378676 COPRSQ9NQ92 184 aa23.33■■□□□ 1.33
SHROOM1-202ENST00000378676 DBNLQ9UJU6 430 aaKnown RBP23.33■■□□□ 1.33
SHROOM1-202ENST00000378676 ZKSCAN5Q9Y2L8 839 aa23.33■■□□□ 1.33
SHROOM1-202ENST00000378676 COL15A1P39059 1388 aa23.33■■□□□ 1.32
SHROOM1-202ENST00000378676 VPS37CA5D8V6 355 aaPredicted RBP23.33■■□□□ 1.32
SHROOM1-202ENST00000378676 RRP9O43818 475 aaKnown RBP23.33■■□□□ 1.32
SHROOM1-202ENST00000378676 SNRPA1P09661 255 aaKnown RBP23.33■■□□□ 1.32
SHROOM1-202ENST00000378676 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.33■■□□□ 1.32
SHROOM1-202ENST00000378676 PTPN12Q05209 780 aaKnown RBP23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 UBE3BQ7Z3V4 1068 aa23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 TTC5Q8N0Z6 440 aa23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 ATP6V1DQ9Y5K8 247 aa23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 NUP188Q5SRE5 1749 aa23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 LAMA4Q16363 1823 aa23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 TJP1Q07157 1748 aa23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 TFCP2Q12800 502 aa23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 NDUFB9Q9Y6M9 179 aa23.32■■□□□ 1.32
SHROOM1-202ENST00000378676 ZNF500O60304 480 aaPredicted RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms